Experiment set28IT024 for Pseudomonas putida KT2440

Compare to:

4-Guanidinobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4724 -6.0 -11.7 Carbamoyl-phosphate synthase small chain compare
PP_0293 -5.3 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0422 -5.1 -7.8 Indole-3-glycerol phosphate synthase compare
PP_4723 -5.0 -20.3 Carbamoyl-phosphate synthase large chain compare
PP_1985 -4.9 -7.1 3-isopropylmalate dehydratase large subunit compare
PP_4680 -4.8 -17.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -4.7 -14.3 Histidinol dehydrogenase compare
PP_1986 -4.7 -5.6 3-isopropylmalate dehydratase small subunit compare
PP_0289 -4.7 -10.4 Imidazoleglycerol-phosphate dehydratase compare
PP_1988 -4.5 -9.0 3-isopropylmalate dehydrogenase compare
PP_0082 -4.4 -5.2 tryptophan synthase alpha chain compare
PP_0184 -4.4 -7.9 Argininosuccinate lyase compare
PP_0290 -4.3 -9.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1088 -4.3 -13.9 Argininosuccinate synthase compare
PP_4679 -4.3 -8.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5185 -4.1 -9.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3511 -4.1 -10.3 Branched-chain-amino-acid aminotransferase compare
PP_4678 -4.0 -17.0 Ketol-acid reductoisomerase compare
PP_4909 -4.0 -10.9 phosphoserine phosphatase compare
PP_2370 -3.9 -3.8 conserved protein of unknown function compare
PP_0083 -3.8 -5.2 tryptophan synthase beta chain compare
PP_0967 -3.8 -10.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1995 -3.7 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1231 -3.7 -6.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0417 -3.6 -18.2 Anthranilate synthase component 1 compare
PP_4999 -3.6 -3.4 dihydroorotase-like protein compare
PP_4890 -3.5 -7.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_0965 -3.5 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2001 -3.5 -12.1 O-succinylhomoserine sulfhydrylase compare
PP_1079 -3.5 -6.3 Ornithine carbamoyltransferase compare
PP_5014 -3.4 -4.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0420 -3.4 -12.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5128 -3.3 -8.7 Dihydroxy-acid dehydratase compare
PP_0421 -3.3 -7.0 Anthranilate phosphoribosyltransferase compare
PP_5155 -3.3 -4.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5289 -3.3 -5.3 Acetylglutamate kinase compare
PP_0691 -3.1 -7.2 Glutamate 5-kinase compare
PP_5098 -3.0 -9.6 methionine biosynthesis protein MetW compare
PP_0292 -2.9 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1025 -2.7 -9.0 2-isopropylmalate synthase compare
PP_2328 -2.6 -7.2 Phosphoadenosine phosphosulfate reductase compare
PP_5015 -2.5 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5303 -2.4 -5.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5097 -2.4 -10.8 homoserine O-acetyltransferase compare
PP_0339 -2.4 -5.1 Pyruvate dehydrogenase E1 component compare
PP_2371 -2.4 -6.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1994 -2.3 -2.7 tRNA pseudouridine (38-40)synthase compare
PP_2327 -2.3 -10.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5095 -2.0 -2.3 pyrroline-5-carboxylate reductase compare
PP_3999 -2.0 -5.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4799 -1.9 -1.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0735 -1.9 -2.1 molybdopterin-synthase adenylyltransferase compare
PP_1999 -1.8 -2.6 membrane protein required for colicin V production compare
PP_1912 -1.8 -4.6 Phosphate acyltransferase compare
PP_1664 -1.7 -4.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_3098 -1.7 -1.8 conserved protein of unknown function compare
PP_1022 -1.7 -5.5 glucose 6-phosphate-1-dehydrogenase compare
PP_5075 -1.7 -11.0 glutamate synthase (NADPH) beta subunit compare
PP_0291 -1.7 -2.0 conserved protein of unknown function compare
PP_0787 -1.6 -5.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5076 -1.6 -12.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_5114 -1.6 -2.0 putative adenine methyltransferase compare
PP_0214 -1.6 -5.7 4-aminobutyrate aminotransferase compare
PP_4696 -1.6 -4.7 Nitrogen regulation protein NR(I) compare
PP_5017 -1.5 -1.6 Sec-independent protein translocase protein TatB compare
PP_1366 -1.5 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_1110 -1.5 -3.7 serine acetyltransferase compare
PP_1109 -1.5 -9.5 Transcriptional regulator, GntR family compare
PP_2000 -1.5 -1.4 amidophosphoribosyl transferase compare
PP_4981 -1.4 -1.8 polyisoprene-binding protein, acidic stress response factor compare
PP_4004 -1.4 -2.3 DNA translocase FtsK compare
PP_2402 -1.3 -1.9 putative Sensor histidine kinase compare
PP_4058 -1.3 -8.2 1,4-alpha-glucan branching enzyme compare
PP_5048 -1.3 -6.1 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0834 -1.3 -1.9 Sec translocation complex subunit YajC compare
PP_4943 -1.3 -2.3 putative Glycosyl transferase compare
PP_1589 -1.2 -6.5 uridylyltransferase compare
PP_4364 -1.2 -3.7 putative Anti-sigma F factor antagonist compare
PP_4523 -1.2 -6.0 putative Agmatinase compare
PP_1468 -1.2 -1.5 Tyrosine recombinase XerD compare
PP_4782 -1.1 -2.9 Phosphomethylpyrimidine kinase compare
PP_1111 -1.1 -4.6 putative Synthetase compare
PP_3434 -1.1 -2.5 conserved protein of unknown function compare
PP_4964 -1.1 -1.0 D-erythrose 4-phosphate dehydrogenase compare
PP_5313 -1.0 -2.0 DNA-binding protein HU-alpha compare
PP_2345 -1.0 -2.3 conserved exported protein of unknown function compare
PP_2388 -1.0 -3.3 Transporter, LysE family compare
PP_5104 -1.0 -5.3 thiazole synthase compare
PP_0153 -1.0 -2.1 hypothetical protein compare
PP_4910 -1.0 -1.3 conserved protein of unknown function compare
PP_0833 -1.0 -1.9 queuine tRNA-ribosyltransferase compare
PP_0957 -1.0 -2.0 D-arabinose 5-phosphate isomerase compare
PP_0065 -1.0 -2.4 NAD-binding component of TrK potassium transporter compare
PP_5039 -1.0 -2.3 conserved protein of unknown function compare
PP_4268 -1.0 -1.3 nucleoid-associated broad specificity regulator compare
PP_4997 -1.0 -1.7 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4528 -1.0 -1.8 conserved protein of unknown function compare
PP_2390 -1.0 -5.0 Transcriptional regulator, LysR family compare
PP_2044 -1.0 -1.5 conserved inner membrane protein of unknown function compare
PP_5350 -1.0 -3.7 Transcriptional regulator, RpiR family compare
PP_5000 -0.9 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_1426 -0.9 -7.4 L-aspartate oxidase compare
PP_5322 -0.9 -4.7 putative metal ion transporter compare
PP_4642 -0.9 -0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_0888 -0.9 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_3519 -0.9 -1.2 putative Lipoprotein compare
PP_1216 -0.9 -1.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4522 -0.9 -7.0 Transcriptional regulator, LysR family compare
PP_1683 -0.9 -2.4 Transcriptional regulator, MarR family compare
PP_2378 -0.9 -1.1 Fe/S biogenesis protein NfuA compare
PP_3484 -0.9 -4.4 Response regulator receiver protein compare
PP_1237 -0.9 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2168 -0.9 -4.5 Transaldolase compare
PP_0164 -0.9 -5.2 conserved protein of unknown function compare
PP_4126 -0.9 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_4829 -0.8 -2.1 putative precorrin-3B synthase compare
PP_0566 -0.8 -1.4 translation-related factor compare
PP_5047 -0.8 -3.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1122 -0.8 -2.4 OmpA family protein compare
PP_1293 -0.8 -1.3 molybdopterin synthase small subunit compare
PP_4524 -0.8 -6.3 putative Sodium-solute symporter compare
PP_4199 -0.8 -0.9 putative Lipoprotein compare
PP_4989 -0.8 -2.2 Protein PilJ compare
PP_3790 -0.8 -4.7 diaminopimelate epimerase compare
PP_1489 -0.8 -1.8 CheW domain protein compare
PP_2718 -0.8 -1.9 arsenic resistance transcriptional regulator compare
PP_4937 -0.8 -1.2 toluene tolerance protein compare
PP_1124 -0.8 -2.0 conserved membrane protein of unknown function compare
PP_1702 -0.8 -1.7 Recombination-associated protein RdgC compare
PP_1233 -0.7 -2.7 sulfurtransferase compare
PP_5055 -0.7 -2.5 Sulfurtransferase compare
PP_3649 -0.7 -0.5 Transcriptional regulator, GntR family compare
PP_4917 -0.7 -1.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2847 -0.7 -1.3 Urease accessory protein UreJ compare
PP_3318 -0.7 -1.1 conserved protein of unknown function compare
PP_2681 -0.7 -1.4 coenzyme PQQ synthesis protein D compare
PP_2845 -0.7 -3.8 urease subunit alpha compare
PP_3971 -0.7 -1.0 conserved protein of unknown function compare
PP_5227 -0.7 -3.7 diaminopimelate decarboxylase compare
PP_0512 -0.7 -1.9 hypothetical protein compare
PP_3481 -0.7 -1.8 conserved exported protein of unknown function compare
PP_0593 -0.7 -0.9 putative ribosome-binding factor compare
PP_3417 -0.7 -3.6 D-gluconate transporter compare
PP_5580 -0.7 -1.7 protein of unknown function compare
PP_1068 -0.6 -2.8 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_3204 -0.6 -1.4 conserved protein of unknown function compare
PP_0062 -0.6 -2.1 3-methyl-adenine DNA glycosylase I compare
PP_0002 -0.6 -3.8 probable chromosome partition protein compare
PP_2568 -0.6 -1.0 Ring-cleaving dioxygenase compare
PP_2929 -0.6 -4.5 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0127 -0.6 -2.9 Thiol:disulfide interchange protein compare
PP_1322 -0.6 -1.3 putative Lipoprotein compare
PP_1834 -0.6 -1.8 conserved protein of unknown function compare
PP_4874 -0.6 -0.5 50S ribosomal protein L9 compare
PP_2203 -0.6 -0.8 conserved protein of unknown function compare
PP_3409 -0.6 -1.3 putative Cobalamin biosynthesis protein cobE compare
PP_1731 -0.6 -2.1 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_0846 -0.6 -1.0 DnaK-like molecular chaperone specific for IscU compare
PP_2622 -0.6 -2.4 conserved protein of unknown function compare
PP_3241 -0.6 -1.2 conserved exported protein of unknown function compare
PP_3392 -0.6 -1.2 conserved protein of unknown function compare
PP_1188 -0.6 -3.5 C4-dicarboxylate transport protein compare
PP_4988 -0.6 -2.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1348 -0.6 -2.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2922 -0.6 -2.7 Urea amidolyase-related protein compare
PP_2499 -0.6 -1.1 conserved protein of unknown function compare
PP_4362 -0.6 -2.0 conserved protein of unknown function compare
PP_4847 -0.6 -1.6 chaperone modulatory of CbpA co-chaperone protein compare
PP_0809 -0.6 -3.9 disulfide bond formation protein B compare
PP_4828 -0.6 -0.8 Precorrin-8X methylmutase compare
PP_2547 -0.6 -2.5 Transcriptional regulator, LysR family compare
PP_t57 -0.6 -1.9 tRNA-Arg compare
PP_4383 -0.5 -2.3 Flagellar P-ring protein compare
PP_1217 -0.5 -1.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0306 -0.5 -1.8 conserved protein of unknown function compare
PP_0980 -0.5 -2.6 Probable cytosol aminopeptidase compare
PP_4952 -0.5 -1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3647 -0.5 -2.2 putative Oxidoreductase compare
PP_5422 -0.5 -2.0 hypothetical protein compare
PP_2844 -0.5 -2.5 Urease subunit beta compare
PP_0919 -0.5 -1.8 conserved protein of unknown function compare
PP_1673 -0.5 -2.2 cobyrinate a,c-diamide synthase compare
PP_2389 -0.5 -3.0 conserved protein of unknown function compare
PP_4803 -0.5 -3.4 D-alanyl-D-alanine carboxypeptidase compare
PP_5496 -0.5 -2.1 conserved exported protein of unknown function compare
PP_3829 -0.5 -1.7 Molybdenum transport system permease protein ModB compare
PP_1415 -0.5 -1.1 putative membrane associated enzyme subunit compare
PP_2307 -0.5 -1.2 conserved protein of unknown function compare
PP_3884 -0.5 -1.8 Phage holin, lambda family compare
PP_1215 -0.5 -0.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_2280 -0.5 -0.9 conserved protein of unknown function compare
PP_1239 -0.5 -2.0 Metallo-beta-lactamase family protein compare
PP_3765 -0.5 -1.6 H-NS family protein MvaT compare
PP_5621 -0.5 -0.9 protein of unknown function compare
PP_3590 -0.5 -3.0 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0274 -0.5 -0.7 putative transcriptional regulator containing HTH domain compare
PP_3603 -0.5 -2.6 Transcriptional regulator, GntR family compare
PP_3411 -0.5 -1.1 conserved protein of unknown function compare
PP_3384 -0.5 -1.9 gluconate 2-dehydrogenase gamma subunit compare
PP_2046 -0.5 -1.6 Transcriptional regulator, LysR family compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source 4-Guanidinobutyric acid in Pseudomonas putida KT2440

For nitrogen source 4-Guanidinobutyric acid across organisms