Experiment set28IT022 for Pseudomonas putida KT2440

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Cytosine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0290 -5.7 -9.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0292 -5.4 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5155 -4.9 -7.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1985 -4.9 -7.5 3-isopropylmalate dehydratase large subunit compare
PP_5048 -4.8 -7.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4909 -4.8 -11.1 phosphoserine phosphatase compare
PP_0967 -4.7 -14.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5075 -4.6 -15.7 glutamate synthase (NADPH) beta subunit compare
PP_0184 -4.5 -8.1 Argininosuccinate lyase compare
PP_5076 -4.5 -23.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_0082 -4.4 -6.1 tryptophan synthase alpha chain compare
PP_0083 -4.4 -5.2 tryptophan synthase beta chain compare
PP_0293 -4.2 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0966 -4.1 -12.8 Histidinol dehydrogenase compare
PP_1995 -4.1 -11.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0420 -4.1 -13.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4723 -4.0 -22.2 Carbamoyl-phosphate synthase large chain compare
PP_0417 -4.0 -19.4 Anthranilate synthase component 1 compare
PP_1088 -4.0 -13.6 Argininosuccinate synthase compare
PP_4679 -3.9 -9.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4724 -3.9 -12.7 Carbamoyl-phosphate synthase small chain compare
PP_0422 -3.8 -6.1 Indole-3-glycerol phosphate synthase compare
PP_4680 -3.8 -17.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -3.8 -8.4 Imidazoleglycerol-phosphate dehydratase compare
PP_4678 -3.7 -17.7 Ketol-acid reductoisomerase compare
PP_5185 -3.7 -9.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5047 -3.7 -7.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0421 -3.7 -7.8 Anthranilate phosphoribosyltransferase compare
PP_5095 -3.6 -2.5 pyrroline-5-carboxylate reductase compare
PP_1988 -3.6 -10.1 3-isopropylmalate dehydrogenase compare
PP_1079 -3.5 -8.4 Ornithine carbamoyltransferase compare
PP_1110 -3.5 -3.9 serine acetyltransferase compare
PP_0691 -3.5 -6.0 Glutamate 5-kinase compare
PP_0965 -3.5 -8.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1986 -3.4 -5.7 3-isopropylmalate dehydratase small subunit compare
PP_1589 -3.1 -11.6 uridylyltransferase compare
PP_5128 -3.1 -10.0 Dihydroxy-acid dehydratase compare
PP_3511 -3.0 -10.2 Branched-chain-amino-acid aminotransferase compare
PP_5289 -3.0 -4.7 Acetylglutamate kinase compare
PP_5098 -3.0 -8.4 methionine biosynthesis protein MetW compare
PP_4058 -2.9 -14.2 1,4-alpha-glucan branching enzyme compare
PP_4890 -2.9 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_2328 -2.9 -7.5 Phosphoadenosine phosphosulfate reductase compare
PP_2168 -2.8 -11.0 Transaldolase compare
PP_2001 -2.8 -11.5 O-succinylhomoserine sulfhydrylase compare
PP_5097 -2.7 -12.4 homoserine O-acetyltransferase compare
PP_1025 -2.6 -11.0 2-isopropylmalate synthase compare
PP_3484 -2.6 -8.0 Response regulator receiver protein compare
PP_5015 -2.5 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4364 -2.5 -5.3 putative Anti-sigma F factor antagonist compare
PP_2370 -2.5 -3.6 conserved protein of unknown function compare
PP_5014 -2.5 -5.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4696 -2.4 -6.8 Nitrogen regulation protein NR(I) compare
PP_1111 -2.3 -7.9 putative Synthetase compare
PP_0339 -2.3 -5.9 Pyruvate dehydrogenase E1 component compare
PP_1109 -2.3 -11.7 Transcriptional regulator, GntR family compare
PP_3999 -2.1 -5.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1994 -2.1 -2.8 tRNA pseudouridine (38-40)synthase compare
PP_4799 -2.1 -1.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1022 -2.0 -5.7 glucose 6-phosphate-1-dehydrogenase compare
PP_0291 -2.0 -2.3 conserved protein of unknown function compare
PP_2371 -2.0 -6.6 Sulphite reductase hemoprotein, beta subunit compare
PP_0164 -2.0 -9.7 conserved protein of unknown function compare
PP_5347 -1.9 -9.5 pyruvate carboxylase subunit A compare
PP_4943 -1.9 -3.0 putative Glycosyl transferase compare
PP_0846 -1.8 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_2302 -1.8 -4.1 DNA-binding, ATP-dependent protease compare
PP_0127 -1.7 -8.4 Thiol:disulfide interchange protein compare
PP_5303 -1.7 -5.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2414 -1.6 -2.2 conserved exported protein of unknown function compare
PP_5348 -1.6 -8.0 Transcriptional regulator, LysR family compare
PP_2000 -1.6 -1.5 amidophosphoribosyl transferase compare
PP_2327 -1.6 -8.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0001 -1.6 -1.8 probable chromosome-partitioning protein compare
PP_4004 -1.5 -2.6 DNA translocase FtsK compare
PP_4940 -1.5 -7.3 Putative glycosyltransferase compare
PP_3821 -1.5 -8.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2088 -1.4 -3.4 RNA polymerase sigma factor SigX compare
PP_3189 -1.4 -5.9 cytosine deaminase / isoguanine deaminase conserved
PP_1493 -1.4 -3.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5346 -1.3 -6.2 pyruvate carboxylase subunit B compare
PP_0914 -1.3 -6.7 GGDEF domain protein compare
PP_1912 -1.3 -5.6 Phosphate acyltransferase compare
PP_0787 -1.3 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4999 -1.3 -2.2 dihydroorotase-like protein compare
PP_1097 -1.2 -1.9 Methionine--tRNA ligase compare
PP_3637 -1.2 -1.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5230 -1.2 -3.0 Tyrosine recombinase XerC compare
PP_3187 -1.2 -6.3 Cytosine transporter conserved
PP_1231 -1.2 -4.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3790 -1.2 -6.3 diaminopimelate epimerase compare
PP_1362 -1.2 -3.5 pyruvate kinase II compare
PP_0362 -1.1 -7.7 Biotin synthase compare
PP_2388 -1.1 -4.5 Transporter, LysE family compare
PP_0801 -1.1 -1.3 conserved exported protein of unknown function compare
PP_2390 -1.1 -6.3 Transcriptional regulator, LysR family compare
PP_1664 -1.0 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_5227 -1.0 -5.5 diaminopimelate decarboxylase compare
PP_4561 -1.0 -1.2 stress response protein compare
PP_0905 -1.0 -2.2 conserved exported protein of unknown function compare
PP_2402 -1.0 -1.9 putative Sensor histidine kinase compare
PP_1237 -1.0 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3519 -0.9 -1.3 putative Lipoprotein compare
PP_4964 -0.9 -1.4 D-erythrose 4-phosphate dehydrogenase compare
PP_3824 -0.9 -2.0 conserved exported protein of unknown function compare
PP_4695 -0.9 -6.5 Sensory box histidine kinase compare
PP_4136 -0.9 -1.1 Transcriptional regulator, LuxR family compare
PP_0406 -0.9 -4.5 Nucleotidyltransferase family protein compare
PP_1802 -0.9 -7.4 glycosyl transferase compare
PP_4880 -0.9 -4.0 exoribonuclease R compare
PP_1534 -0.9 -4.0 conserved protein of unknown function compare
PP_1216 -0.9 -1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5232 -0.9 -2.1 conserved protein of unknown function compare
PP_4938 -0.9 -5.0 putative Glycosyl transferase compare
PP_0393 -0.9 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1805 -0.9 -7.6 Polysaccharide biosynthesis protein compare
PP_5322 -0.9 -5.1 putative metal ion transporter compare
PP_0401 -0.8 -1.1 Ribosomal RNA small subunit methyltransferase A compare
PP_0719 -0.8 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1776 -0.8 -7.2 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4789 -0.8 -4.1 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5198 -0.8 -2.6 conserved protein of unknown function compare
PP_0566 -0.8 -1.5 translation-related factor compare
PP_1217 -0.8 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1804 -0.8 -6.0 Glycosyl transferase WbpL compare
PP_1702 -0.8 -1.8 Recombination-associated protein RdgC compare
PP_1800 -0.8 -5.7 Oxidoreductase Rmd compare
PP_1679 -0.8 -2.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3505 -0.8 -2.1 conserved protein of unknown function compare
PP_4480 -0.8 -5.3 arginine N-succinyltransferase, subunit alpha compare
PP_4546 -0.8 -3.0 ATP-dependent helicase HrpA compare
PP_1801 -0.8 -5.7 Glycosyl transferase WbpY compare
PP_1780 -0.8 -6.8 putative mannosyltransferase compare
PP_1779 -0.7 -3.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0775 -0.7 -1.5 conserved protein of unknown function compare
PP_3376 -0.7 -3.4 putative phosphonate dehydrogenase compare
PP_1656 -0.7 -4.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_5350 -0.7 -2.4 Transcriptional regulator, RpiR family compare
PP_5546 -0.7 -2.0 conserved protein of unknown function compare
PP_2322 -0.7 -5.7 Major outer membrane lipoprotein compare
PP_0596 -0.7 -5.6 Omega-amino acid--pyruvate aminotransferase compare
PP_5253 -0.7 -1.8 Arylesterase compare
PP_3649 -0.7 -0.7 Transcriptional regulator, GntR family compare
PP_2899 -0.7 -1.9 conserved exported protein of unknown function compare
PP_0283 -0.7 -2.5 Arginine/ornithine transport ATP-binding protein AotP compare
PP_4984 -0.7 -4.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3417 -0.7 -2.4 D-gluconate transporter compare
PP_5644 -0.7 -1.2 conserved membrane protein of unknown function compare
PP_1799 -0.7 -5.3 GDP-mannose 4,6-dehydratase compare
PP_1233 -0.7 -3.0 sulfurtransferase compare
PP_2345 -0.7 -2.0 conserved exported protein of unknown function compare
PP_1778 -0.7 -3.6 Lipopolysaccharide ABC export system, permease protein compare
PP_5093 -0.7 -0.9 twitching motility protein compare
PP_4099 -0.7 -6.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5313 -0.7 -1.2 DNA-binding protein HU-alpha compare
PP_4037 -0.7 -4.6 NADP-dependent dihydropyrimidine dehydrogenase subunit compare
PP_2976 -0.7 -1.8 putative transposase compare
PP_1650 -0.7 -5.2 Sensor protein GacS compare
PP_5104 -0.7 -4.3 thiazole synthase compare
PP_1503 -0.7 -2.4 conserved protein of unknown function compare
PP_1528 -0.6 -2.2 conserved protein of unknown function compare
PP_3378 -0.6 -0.7 putative 2-ketogluconokinase compare
PP_5216 -0.6 -1.7 exopolyphosphatase compare
PP_3377 -0.6 -5.1 2-ketogluconate transporter, putative compare
PP_2307 -0.6 -1.4 conserved protein of unknown function compare
PP_2633 -0.6 -0.7 conserved protein of unknown function compare
PP_0319 -0.6 -1.5 conserved protein of unknown function compare
PP_4936 -0.6 -2.9 O-antigen polymerase compare
PP_5704 -0.6 -2.1 conserved protein of unknown function compare
PP_4660 -0.6 -2.0 Transcriptional regulator, LysR family compare
PP_4358 -0.6 -3.2 flagellar synthesis, switching and energizing component compare
PP_0833 -0.6 -1.3 queuine tRNA-ribosyltransferase compare
PP_0735 -0.6 -0.4 molybdopterin-synthase adenylyltransferase compare
PP_4722 -0.6 -2.2 Transcription elongation factor GreA compare
PP_2582 -0.6 -2.7 putative Heme oxygenase compare
PP_4268 -0.6 -1.1 nucleoid-associated broad specificity regulator compare
PP_3188 -0.6 -3.6 conserved protein of unknown function compare
PP_2756 -0.6 -1.2 conserved protein of unknown function compare
PP_0809 -0.6 -4.3 disulfide bond formation protein B compare
PP_1468 -0.5 -1.1 Tyrosine recombinase XerD compare
PP_0122 -0.5 -1.4 conserved exported protein of unknown function compare
PP_2433 -0.5 -1.2 conserved protein of unknown function compare
PP_4829 -0.5 -1.5 putative precorrin-3B synthase compare
PP_2074 -0.5 -2.5 Transcriptional regulator, LysR family compare
PP_3064 -0.5 -1.8 Phage tail protein compare
PP_1009 -0.5 -2.1 glyceraldehyde-3-phosphate dehydrogenase compare
PP_5028 -0.5 -1.7 proline iminopeptidase compare
PP_5035 -0.5 -3.2 Histidine utilization repressor compare
PP_1435 -0.5 -1.7 DNA repair protein RecO compare
PP_2737 -0.5 -1.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4693 -0.5 -1.4 RNA polymerase-binding transcription factor DksA compare
PP_1208 -0.5 -0.7 conserved protein of unknown function, SlyX family compare
PP_5051 -0.5 -1.5 conserved protein of unknown function compare
PP_2700 -0.5 -1.3 AhpC/TSA family protein compare
PP_5571 -0.5 -0.9 conserved protein of unknown function compare
PP_1489 -0.5 -2.1 CheW domain protein compare
PP_1224 -0.5 -3.4 periplasmic subunit of the TolQRA transport system compare
PP_5519 -0.5 -1.7 conserved protein of unknown function of phage origin compare
PP_1008 -0.5 -1.4 RNA polymerase subunit sigma-24 compare
PP_5628 -0.5 -1.1 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Cytosine in Pseudomonas putida KT2440

For nitrogen source Cytosine across organisms