Experiment set28IT021 for Pseudomonas putida KT2440

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Cytosine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0292 -5.3 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1985 -5.1 -7.7 3-isopropylmalate dehydratase large subunit compare
PP_0082 -5.0 -3.4 tryptophan synthase alpha chain compare
PP_5048 -4.7 -8.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1988 -4.6 -10.6 3-isopropylmalate dehydrogenase compare
PP_4890 -4.6 -8.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_4724 -4.5 -13.9 Carbamoyl-phosphate synthase small chain compare
PP_0422 -4.5 -8.6 Indole-3-glycerol phosphate synthase compare
PP_4680 -4.4 -16.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5075 -4.3 -14.7 glutamate synthase (NADPH) beta subunit compare
PP_5076 -4.3 -22.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_4678 -4.3 -17.4 Ketol-acid reductoisomerase compare
PP_5015 -4.3 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0083 -4.2 -5.0 tryptophan synthase beta chain compare
PP_0420 -4.2 -14.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0290 -4.2 -9.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1088 -4.1 -14.4 Argininosuccinate synthase compare
PP_4909 -4.1 -10.3 phosphoserine phosphatase compare
PP_4679 -4.1 -8.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -4.0 -12.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0293 -4.0 -3.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4723 -4.0 -21.1 Carbamoyl-phosphate synthase large chain compare
PP_5047 -3.9 -9.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0966 -3.9 -10.7 Histidinol dehydrogenase compare
PP_1986 -3.9 -5.0 3-isopropylmalate dehydratase small subunit compare
PP_0289 -3.8 -9.9 Imidazoleglycerol-phosphate dehydratase compare
PP_5014 -3.7 -3.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_0184 -3.7 -8.6 Argininosuccinate lyase compare
PP_5128 -3.6 -10.0 Dihydroxy-acid dehydratase compare
PP_0417 -3.6 -18.0 Anthranilate synthase component 1 compare
PP_1995 -3.5 -10.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5289 -3.4 -4.6 Acetylglutamate kinase compare
PP_0691 -3.3 -7.0 Glutamate 5-kinase compare
PP_1589 -3.3 -12.1 uridylyltransferase compare
PP_5185 -3.2 -8.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5155 -3.2 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0965 -3.2 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0421 -3.2 -7.3 Anthranilate phosphoribosyltransferase compare
PP_4058 -3.1 -14.2 1,4-alpha-glucan branching enzyme compare
PP_3511 -3.1 -9.7 Branched-chain-amino-acid aminotransferase compare
PP_4943 -2.9 -3.4 putative Glycosyl transferase compare
PP_2168 -2.8 -10.2 Transaldolase compare
PP_1079 -2.8 -8.4 Ornithine carbamoyltransferase compare
PP_5098 -2.7 -8.1 methionine biosynthesis protein MetW compare
PP_4696 -2.7 -6.7 Nitrogen regulation protein NR(I) compare
PP_5097 -2.6 -12.3 homoserine O-acetyltransferase compare
PP_0339 -2.6 -5.2 Pyruvate dehydrogenase E1 component compare
PP_4364 -2.6 -7.8 putative Anti-sigma F factor antagonist compare
PP_2001 -2.5 -10.5 O-succinylhomoserine sulfhydrylase compare
PP_1025 -2.4 -10.0 2-isopropylmalate synthase compare
PP_2371 -2.4 -6.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1994 -2.4 -2.7 tRNA pseudouridine (38-40)synthase compare
PP_2328 -2.3 -6.9 Phosphoadenosine phosphosulfate reductase compare
PP_3999 -2.3 -5.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1110 -2.2 -5.3 serine acetyltransferase compare
PP_0401 -2.2 -1.5 Ribosomal RNA small subunit methyltransferase A compare
PP_1022 -2.2 -6.4 glucose 6-phosphate-1-dehydrogenase compare
PP_3484 -2.1 -7.4 Response regulator receiver protein compare
PP_1109 -2.0 -11.4 Transcriptional regulator, GntR family compare
PP_4799 -2.0 -1.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0164 -2.0 -9.6 conserved protein of unknown function compare
PP_5114 -1.9 -2.4 putative adenine methyltransferase compare
PP_5347 -1.9 -8.8 pyruvate carboxylase subunit A compare
PP_2044 -1.9 -2.8 conserved inner membrane protein of unknown function compare
PP_5303 -1.8 -4.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1216 -1.8 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5346 -1.7 -8.4 pyruvate carboxylase subunit B compare
PP_0291 -1.7 -2.1 conserved protein of unknown function compare
PP_1111 -1.7 -4.2 putative Synthetase compare
PP_0319 -1.6 -2.9 conserved protein of unknown function compare
PP_2370 -1.6 -2.5 conserved protein of unknown function compare
PP_5348 -1.6 -6.3 Transcriptional regulator, LysR family compare
PP_4940 -1.5 -7.3 Putative glycosyltransferase compare
PP_1912 -1.5 -5.5 Phosphate acyltransferase compare
PP_1231 -1.5 -4.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4268 -1.4 -1.7 nucleoid-associated broad specificity regulator compare
PP_2327 -1.4 -5.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2388 -1.4 -3.2 Transporter, LysE family compare
PP_5453 -1.4 -2.2 conserved protein of unknown function compare
PP_3821 -1.4 -9.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2378 -1.3 -1.2 Fe/S biogenesis protein NfuA compare
PP_4199 -1.3 -1.3 putative Lipoprotein compare
PP_5095 -1.3 -1.4 pyrroline-5-carboxylate reductase compare
PP_1493 -1.3 -3.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0719 -1.3 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1344 -1.2 -1.7 conserved protein of unknown function compare
PP_0127 -1.2 -6.8 Thiol:disulfide interchange protein compare
PP_5322 -1.2 -6.0 putative metal ion transporter compare
PP_3187 -1.2 -6.9 Cytosine transporter conserved
PP_1322 -1.2 -2.2 putative Lipoprotein compare
PP_1215 -1.2 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_0630 -1.2 -1.4 DNA gyrase inhibitor YacG compare
PP_1664 -1.1 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_5313 -1.1 -1.9 DNA-binding protein HU-alpha compare
PP_0362 -1.1 -7.0 Biotin synthase compare
PP_2631 -1.1 -1.6 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2847 -1.1 -2.2 Urease accessory protein UreJ compare
PP_2414 -1.1 -0.9 conserved exported protein of unknown function compare
PP_3417 -1.0 -3.9 D-gluconate transporter compare
PP_4879 -1.0 -2.7 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_3189 -1.0 -5.2 cytosine deaminase / isoguanine deaminase conserved
PP_3318 -1.0 -2.2 conserved protein of unknown function compare
PP_0153 -1.0 -2.5 hypothetical protein compare
PP_4504 -1.0 -1.2 conserved exported protein of unknown function compare
PP_2390 -1.0 -4.8 Transcriptional regulator, LysR family compare
PP_2302 -1.0 -2.8 DNA-binding, ATP-dependent protease compare
PP_5350 -0.9 -4.0 Transcriptional regulator, RpiR family compare
PP_3376 -0.9 -4.3 putative phosphonate dehydrogenase compare
PP_2433 -0.9 -2.2 conserved protein of unknown function compare
PP_0787 -0.9 -3.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1233 -0.9 -2.8 sulfurtransferase compare
PP_1237 -0.9 -1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1468 -0.9 -1.3 Tyrosine recombinase XerD compare
PP_5055 -0.9 -3.3 Sulfurtransferase compare
PP_5486 -0.9 -1.7 conserved protein of unknown function compare
PP_0801 -0.9 -1.0 conserved exported protein of unknown function compare
PP_4695 -0.9 -6.0 Sensory box histidine kinase compare
PP_1999 -0.9 -1.1 membrane protein required for colicin V production compare
PP_5227 -0.9 -4.9 diaminopimelate decarboxylase compare
PP_2217 -0.8 -1.7 enoyl-CoA hydratase compare
PP_2322 -0.8 -5.7 Major outer membrane lipoprotein compare
PP_1217 -0.8 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0914 -0.8 -5.0 GGDEF domain protein compare
PP_3188 -0.8 -3.8 conserved protein of unknown function compare
PP_5546 -0.8 -2.0 conserved protein of unknown function compare
PP_1826 -0.8 -2.0 Hydrolase, isochorismatase family compare
PP_5253 -0.8 -2.4 Arylesterase compare
PP_4701 -0.8 -0.9 glucose-6-phosphate isomerase compare
PP_0364 -0.8 -4.1 pimeloyl-[acp] methyl ester esterase compare
PP_4005 -0.8 -2.8 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_4722 -0.8 -3.3 Transcription elongation factor GreA compare
PP_1734 -0.8 -0.5 Probable septum site-determining protein MinC compare
PP_3770 -0.7 -1.7 conserved protein of unknown function compare
PP_3790 -0.7 -5.0 diaminopimelate epimerase compare
PP_1293 -0.7 -0.7 molybdopterin synthase small subunit compare
PP_4910 -0.7 -1.1 conserved protein of unknown function compare
PP_2144 -0.7 -2.2 Transcriptional regulator, TetR family compare
PP_4531 -0.7 -3.0 conserved exported protein of unknown function compare
PP_0596 -0.7 -5.4 Omega-amino acid--pyruvate aminotransferase compare
PP_0840 -0.7 -2.5 serine acetyltransferase compare
PP_1656 -0.7 -4.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_2820 -0.7 -2.2 HTH-type transcriptional regulator nfxB compare
PP_1824 -0.7 -1.4 Smr domain protein compare
PP_5748 -0.7 -1.3 cytochrome c heme lyase subunit compare
PP_2793 -0.7 -1.4 Acyl-CoA dehydrogenase family protein compare
PP_2247 -0.7 -2.8 putative Endoribonuclease compare
PP_3903 -0.7 -1.7 conserved protein of unknown function compare
PP_4895 -0.7 -1.8 tRNA dimethylallyltransferase compare
PP_4273 -0.7 -1.4 Transcriptional regulator, MerR family compare
PP_4829 -0.7 -1.9 putative precorrin-3B synthase compare
PP_1055 -0.6 -1.6 Type II secretion pathway protein GspN compare
PP_0003 -0.6 -2.1 16S RNA methyltransferase compare
PP_1362 -0.6 -2.1 pyruvate kinase II compare
PP_2000 -0.6 -1.0 amidophosphoribosyl transferase compare
PP_4984 -0.6 -4.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4036 -0.6 -3.1 D-hydantoinase/dihydropyrimidinase compare
PP_2765 -0.6 -1.9 putative Sulfonate monooxygenase MsuD compare
PP_3555 -0.6 -3.5 putative Transmembrane sensor compare
PP_5104 -0.6 -3.9 thiazole synthase compare
PP_1190 -0.6 -2.3 conserved protein of unknown function compare
PP_3377 -0.6 -4.6 2-ketogluconate transporter, putative compare
PP_5689 -0.6 -2.3 conserved protein of unknown function compare
PP_4789 -0.6 -2.0 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0566 -0.6 -1.1 translation-related factor compare
PP_3239 -0.6 -1.9 putative cointegrate resolution protein T Tn4652 compare
PP_4143 -0.6 -2.3 conserved protein of unknown function compare
PP_0065 -0.6 -1.6 NAD-binding component of TrK potassium transporter compare
PP_2031 -0.6 -0.9 conserved protein of unknown function compare
PP_2475 -0.6 -2.0 Transcriptional regulator, TetR family compare
PP_5232 -0.6 -1.3 conserved protein of unknown function compare
PP_4880 -0.6 -2.8 exoribonuclease R compare
PP_4480 -0.6 -3.9 arginine N-succinyltransferase, subunit alpha compare
PP_5110 -0.6 -1.2 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4464 -0.6 -2.5 Transcriptional regulator, LysR family compare
PP_4999 -0.6 -1.1 dihydroorotase-like protein compare
PP_4099 -0.6 -5.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4037 -0.6 -3.9 NADP-dependent dihydropyrimidine dehydrogenase subunit compare
PP_5028 -0.6 -1.9 proline iminopeptidase compare
PP_3447 -0.6 -0.8 conserved membrane protein of unknown function compare
PP_3286 -0.6 -1.9 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_3384 -0.6 -1.9 gluconate 2-dehydrogenase gamma subunit compare
PP_3746 -0.6 -2.1 glycolate oxidase, putative FAD-binding subunit compare
PP_1397 -0.6 -2.3 conserved protein of unknown function compare
PP_0152 -0.6 -1.3 conserved exported protein of unknown function compare
PP_1742 -0.5 -1.5 conserved inner membrane protein of unknown function compare
PP_2510 -0.5 -1.7 conserved protein of unknown function compare
PP_0122 -0.5 -1.1 conserved exported protein of unknown function compare
PP_4363 -0.5 -4.1 Sensor histidine kinase/response regulator compare
PP_4697 -0.5 -2.6 poly(A) polymerase compare
PP_5644 -0.5 -1.5 conserved membrane protein of unknown function compare
PP_0833 -0.5 -1.6 queuine tRNA-ribosyltransferase compare
PP_3156 -0.5 -2.9 Universal stress protein family compare
PP_1214 -0.5 -1.3 putative transcriptional regulatory protein compare
PP_0002 -0.5 -3.2 probable chromosome partition protein compare
PP_1650 -0.5 -4.5 Sensor protein GacS compare
PP_1366 -0.5 -0.6 Transcriptional regulator MvaT, P16 subunit compare
PP_3840 -0.5 -1.1 conserved protein of unknown function compare
PP_5255 -0.5 -2.5 putative hydrolase compare
PP_0919 -0.5 -1.8 conserved protein of unknown function compare
PP_0917 -0.5 -2.9 Chromosome initiation inhibitor compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Cytosine in Pseudomonas putida KT2440

For nitrogen source Cytosine across organisms