Experiment set28IT020 for Pseudomonas putida KT2440

Compare to:

Hydantoin nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_2306 -2.3 -3.0 conserved exported protein of unknown function compare
PP_4004 -2.0 -2.3 DNA translocase FtsK compare
PP_5075 -1.9 -10.1 glutamate synthase (NADPH) beta subunit compare
PP_5076 -1.8 -12.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_1216 -1.8 -2.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4799 -1.7 -2.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5048 -1.7 -7.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0914 -1.6 -8.1 GGDEF domain protein compare
PP_0735 -1.5 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_2302 -1.5 -3.6 DNA-binding, ATP-dependent protease compare
PP_0083 -1.5 -5.1 tryptophan synthase beta chain compare
PP_4340 -1.4 -4.1 response regulator for chemotactic signal transduction compare
PP_5095 -1.4 -1.6 pyrroline-5-carboxylate reductase compare
PP_5047 -1.4 -6.4 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_2575 -1.4 -2.6 conserved exported protein of unknown function compare
PP_1493 -1.4 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1986 -1.4 -2.7 3-isopropylmalate dehydratase small subunit compare
PP_0833 -1.3 -2.8 queuine tRNA-ribosyltransferase compare
PP_4364 -1.3 -5.1 putative Anti-sigma F factor antagonist compare
PP_5014 -1.3 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4094 -1.2 -2.6 conserved protein of unknown function compare
PP_4561 -1.2 -1.2 stress response protein compare
PP_1589 -1.2 -6.3 uridylyltransferase compare
PP_4910 -1.1 -1.6 conserved protein of unknown function compare
PP_1995 -1.1 -4.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0082 -1.1 -2.7 tryptophan synthase alpha chain compare
PP_2044 -1.1 -2.0 conserved inner membrane protein of unknown function compare
PP_2000 -1.1 -1.0 amidophosphoribosyl transferase compare
PP_4890 -1.0 -3.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_0966 -1.0 -6.3 Histidinol dehydrogenase compare
PP_2414 -1.0 -1.5 conserved exported protein of unknown function compare
PP_1985 -1.0 -3.8 3-isopropylmalate dehydratase large subunit compare
PP_2568 -1.0 -1.4 Ring-cleaving dioxygenase compare
PP_0421 -1.0 -5.2 Anthranilate phosphoribosyltransferase compare
PP_2370 -1.0 -2.0 conserved protein of unknown function compare
PP_2307 -1.0 -1.7 conserved protein of unknown function compare
PP_3511 -0.9 -5.4 Branched-chain-amino-acid aminotransferase compare
PP_4724 -0.9 -5.8 Carbamoyl-phosphate synthase small chain compare
PP_4392 -0.9 -5.4 chemotaxis protein methyltransferase compare
PP_1326 -0.9 -2.1 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4593 -0.9 -1.7 conserved protein of unknown function compare
PP_4034 -0.9 -3.3 N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 2 compare
PP_2387 -0.9 -1.9 conserved protein of unknown function compare
PP_0832 -0.9 -3.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5582 -0.9 -1.7 conserved protein of unknown function compare
PP_0290 -0.9 -3.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4662 -0.9 -3.1 conserved protein of unknown function compare
PP_5232 -0.9 -1.2 conserved protein of unknown function compare
PP_1079 -0.9 -3.8 Ornithine carbamoyltransferase compare
PP_3398 -0.9 -2.5 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4678 -0.8 -6.3 Ketol-acid reductoisomerase compare
PP_4680 -0.8 -6.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2718 -0.8 -1.4 arsenic resistance transcriptional regulator compare
PP_3447 -0.8 -1.1 conserved membrane protein of unknown function compare
PP_5007 -0.8 -2.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1988 -0.8 -3.2 3-isopropylmalate dehydrogenase compare
PP_1408 -0.8 -4.7 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_5674 -0.8 -1.8 conserved protein of unknown function compare
PP_0289 -0.8 -3.9 Imidazoleglycerol-phosphate dehydratase compare
PP_4504 -0.8 -2.0 conserved exported protein of unknown function compare
PP_2001 -0.8 -4.7 O-succinylhomoserine sulfhydrylase compare
PP_0965 -0.8 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1122 -0.8 -1.1 OmpA family protein compare
PP_5097 -0.8 -5.7 homoserine O-acetyltransferase compare
PP_4707 -0.8 -2.1 OsmY-related protein compare
PP_5475 -0.8 -1.0 conserved protein of unknown function compare
PP_4723 -0.8 -6.5 Carbamoyl-phosphate synthase large chain compare
PP_4363 -0.7 -4.8 Sensor histidine kinase/response regulator compare
PP_5128 -0.7 -4.1 Dihydroxy-acid dehydratase compare
PP_5338 -0.7 -1.1 aspartate ammonia-lyase compare
PP_1099 -0.7 -1.3 Cold shock protein CapB compare
PP_0185 -0.7 -3.5 Positive alginate biosynthesis regulatory protein compare
PP_0420 -0.7 -4.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1293 -0.7 -0.9 molybdopterin synthase small subunit compare
PP_2322 -0.7 -4.6 Major outer membrane lipoprotein compare
PP_2147 -0.7 -2.0 conserved exported protein of unknown function compare
PP_1605 -0.7 -1.8 Ribonuclease HII compare
PP_2320 -0.7 -5.3 conserved exported protein of unknown function compare
PP_5003 -0.7 -4.6 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_0417 -0.7 -5.8 Anthranilate synthase component 1 compare
PP_4880 -0.7 -3.4 exoribonuclease R compare
PP_2846 -0.7 -2.7 urease accessory protein compare
PP_0422 -0.7 -2.9 Indole-3-glycerol phosphate synthase compare
PP_2820 -0.7 -2.3 HTH-type transcriptional regulator nfxB compare
PP_5225 -0.7 -1.4 frataxin compare
PP_2328 -0.7 -2.3 Phosphoadenosine phosphosulfate reductase compare
PP_5185 -0.7 -3.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4679 -0.7 -3.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4058 -0.7 -4.7 1,4-alpha-glucan branching enzyme compare
PP_2137 -0.7 -1.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_5465 -0.7 -3.2 conserved protein of unknown function compare
PP_0292 -0.7 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5666 -0.7 -1.6 putative microcin B17-like processing protein, McbB family compare
PP_4999 -0.7 -1.4 dihydroorotase-like protein compare
PP_2747 -0.7 -1.1 conserved protein of unknown function compare
PP_5008 -0.7 -1.4 Poly granule-associated protein compare
PP_2720 -0.7 -1.3 conserved protein of unknown function compare
PP_5098 -0.7 -3.0 methionine biosynthesis protein MetW compare
PP_2960 -0.6 -2.3 transcriptional regulator, AraC family compare
PP_4036 -0.6 -2.8 D-hydantoinase/dihydropyrimidinase compare
PP_5507 -0.6 -2.6 protein of unknown function compare
PP_2740 -0.6 -1.0 Transcriptional regulator, MerR family compare
PP_3926 -0.6 -1.2 short-chain dehydrogenase compare
PP_4739 -0.6 -1.3 conserved protein of unknown function compare
PP_3892 -0.6 -1.4 conserved protein of unknown function compare
PP_1683 -0.6 -1.4 Transcriptional regulator, MarR family compare
PP_4233 -0.6 -2.8 putative Oxidoreductase, small subunit compare
PP_2750 -0.6 -2.1 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4102 -0.6 -2.4 conserved protein of unknown function compare
PP_1233 -0.6 -2.2 sulfurtransferase compare
PP_3833 -0.6 -2.5 Response regulator compare
PP_t57 -0.6 -2.7 tRNA-Arg compare
PP_2168 -0.6 -3.7 Transaldolase compare
PP_3637 -0.6 -1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1215 -0.6 -0.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_0629 -0.6 -2.7 conserved membrane protein of unknown function compare
PP_4035 -0.6 -4.2 putative PydP transporter, NCS1 nucleoside transporter family compare
PP_2088 -0.6 -1.3 RNA polymerase sigma factor SigX compare
PP_1088 -0.6 -3.9 Argininosuccinate synthase compare
PP_3884 -0.6 -2.7 Phage holin, lambda family compare
PP_0834 -0.6 -1.1 Sec translocation complex subunit YajC compare
PP_4296 -0.6 -1.2 conserved exported protein of unknown function compare
PP_2087 -0.6 -1.5 CmpX protein compare
PP_0967 -0.6 -3.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2999 -0.6 -1.0 Glyoxalase family protein compare
PP_1224 -0.6 -2.4 periplasmic subunit of the TolQRA transport system compare
PP_1147 -0.6 -2.0 conserved protein of unknown function compare
PP_3875 -0.6 -1.9 conserved protein of unknown function compare
PP_1237 -0.6 -1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1353 -0.5 -0.4 conserved membrane protein of unknown function compare
PP_1439 -0.5 -1.5 conserved exported protein of unknown function compare
PP_1455 -0.5 -1.6 conserved protein of unknown function compare
PP_4060 -0.5 -4.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_3024 -0.5 -2.5 conserved protein of unknown function compare
PP_5533 -0.5 -0.9 conserved protein of unknown function compare
PP_2530 -0.5 -0.8 conserved protein of unknown function compare
PP_5313 -0.5 -1.1 DNA-binding protein HU-alpha compare
PP_1428 -0.5 -0.4 Sigma factor AlgU negative regulatory protein compare
PP_5100 -0.5 -1.1 dITP/XTP pyrophosphatase compare
PP_3757 -0.5 -1.2 Chemotaxis protein CheY compare
PP_0607 -0.5 -1.9 putative Type IV pili biogenesis protein FimT compare
PP_2681 -0.5 -1.1 coenzyme PQQ synthesis protein D compare
PP_4050 -0.5 -4.3 glycogen synthase compare
PP_3758 -0.5 -2.6 Response regulator/sensor histidine kinase compare
PP_2668 -0.5 -1.0 ABC efflux transporter, ATP-binding protein compare
PP_3318 -0.5 -1.3 conserved protein of unknown function compare
PP_1553 -0.5 -1.0 conserved protein of unknown function compare
PP_4338 -0.5 -2.7 Chemotaxis histidine kinase CheA compare
PP_5152 -0.5 -2.6 conserved exported protein of unknown function compare
PP_2753 -0.5 -2.3 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_4419 -0.5 -1.3 transposase compare
PP_1055 -0.5 -1.3 Type II secretion pathway protein GspN compare
PP_5505 -0.5 -1.2 conserved transmembrane protein of unknown function compare
PP_2070 -0.5 -1.2 Transcriptional regulator, AraC family compare
PP_3081 -0.5 -2.3 conserved protein of unknown function compare
PP_5491 -0.5 -1.2 conserved protein of unknown function with SEC-C motif domain compare
PP_4045 -0.5 -1.3 conserved protein of unknown function compare
PP_5230 -0.5 -1.5 Tyrosine recombinase XerC compare
PP_0691 -0.5 -1.8 Glutamate 5-kinase compare
PP_1739 -0.5 -1.4 conserved membrane protein of unknown function compare
PP_5227 -0.5 -2.5 diaminopimelate decarboxylase compare
PP_3762 -0.5 -1.3 Response regulator compare
PP_5295 -0.5 -1.2 conserved protein of unknown function compare
PP_3821 -0.5 -3.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5580 -0.5 -1.4 protein of unknown function compare
PP_2160 -0.5 -1.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_5603 -0.5 -1.8 putative FAD dependent oxidoreductase compare
PP_5054 -0.5 -0.7 glutaredoxin 3 compare
PP_4671 -0.5 -2.0 conserved exported protein of unknown function compare
PP_5640 -0.5 -1.3 conserved protein of unknown function compare
PP_4136 -0.5 -0.6 Transcriptional regulator, LuxR family compare
PP_5322 -0.5 -2.5 putative metal ion transporter compare
PP_1878 -0.5 -2.8 conserved protein of unknown function compare
PP_1025 -0.5 -3.6 2-isopropylmalate synthase compare
PP_5600 -0.5 -1.3 conserved protein of unknown function compare
PP_5359 -0.5 -1.5 CobW/P47K family protein compare
PP_5001 -0.5 -1.7 protease HslVU, ATPase component compare
PP_2756 -0.5 -1.8 conserved protein of unknown function compare
PP_5528 -0.5 -0.7 conserved protein of unknown function compare
PP_2840 -0.5 -2.5 putative Membrane protein compare
PP_2046 -0.5 -1.4 Transcriptional regulator, LysR family compare
PP_4531 -0.5 -2.1 conserved exported protein of unknown function compare
PP_5233 -0.5 -2.8 ammonium transporter AmtB compare
PP_4273 -0.5 -0.8 Transcriptional regulator, MerR family compare
PP_2842 -0.5 -1.9 urease accessory protein compare
PP_3292 -0.4 -2.0 conserved membrane protein of unknown function compare
PP_5367 -0.4 -2.2 Transketolase domain protein compare
PP_3792 -0.4 -1.5 conserved protein of unknown function compare
PP_5519 -0.4 -1.0 conserved protein of unknown function of phage origin compare
PP_4569 -0.4 -1.5 conserved protein of unknown function compare
PP_1632 -0.4 -0.9 conserved protein of unknown function compare
PP_4817 -0.4 -1.8 MaoC domain protein compare
PP_1218 -0.4 -1.8 putative acyl-CoA thioesterase compare
PP_5546 -0.4 -1.1 conserved protein of unknown function compare
PP_2900 -0.4 -1.4 conserved protein of unknown function compare
PP_1026 -0.4 -1.3 Peptidase, M23/M37 family compare
PP_2110 -0.4 -1.6 putative ribosomal large subunit pseudouridine synthase compare
PP_2032 -0.4 -2.1 putative ATPase compare
PP_5337 -0.4 -1.4 LysR family transcriptional regulator compare
PP_5324 -0.4 -0.9 Response regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source Hydantoin across organisms