Experiment set28IT019 for Pseudomonas putida KT2440

Compare to:

Hydantoin nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4126 -2.3 -2.2 NADH-quinone oxidoreductase subunit I compare
PP_5076 -2.0 -13.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_5075 -1.8 -10.9 glutamate synthase (NADPH) beta subunit compare
PP_1985 -1.8 -6.9 3-isopropylmalate dehydratase large subunit compare
PP_4364 -1.7 -5.5 putative Anti-sigma F factor antagonist compare
PP_0289 -1.7 -7.6 Imidazoleglycerol-phosphate dehydratase compare
PP_1237 -1.7 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5048 -1.7 -5.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4004 -1.6 -2.5 DNA translocase FtsK compare
PP_0293 -1.5 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4504 -1.5 -3.1 conserved exported protein of unknown function compare
PP_2088 -1.5 -3.0 RNA polymerase sigma factor SigX compare
PP_1986 -1.3 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_0082 -1.3 -4.9 tryptophan synthase alpha chain compare
PP_5047 -1.3 -5.0 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1994 -1.3 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_1493 -1.2 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0001 -1.2 -1.5 probable chromosome-partitioning protein compare
PP_0083 -1.2 -4.9 tryptophan synthase beta chain compare
PP_4799 -1.2 -1.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4723 -1.2 -10.2 Carbamoyl-phosphate synthase large chain compare
PP_5313 -1.2 -1.9 DNA-binding protein HU-alpha compare
PP_4828 -1.2 -1.7 Precorrin-8X methylmutase compare
PP_1589 -1.1 -5.9 uridylyltransferase compare
PP_2414 -1.1 -1.9 conserved exported protein of unknown function compare
PP_4724 -1.1 -6.6 Carbamoyl-phosphate synthase small chain compare
PP_2328 -1.1 -4.5 Phosphoadenosine phosphosulfate reductase compare
PP_0290 -1.1 -5.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1988 -1.1 -5.2 3-isopropylmalate dehydrogenase compare
PP_0421 -1.1 -6.3 Anthranilate phosphoribosyltransferase compare
PP_0914 -1.1 -6.6 GGDEF domain protein compare
PP_5652 -1.0 -1.6 conserved protein of unknown function, phage origin compare
PP_0184 -1.0 -4.5 Argininosuccinate lyase compare
PP_0965 -1.0 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5093 -1.0 -1.2 twitching motility protein compare
PP_0630 -1.0 -1.2 DNA gyrase inhibitor YacG compare
PP_2302 -1.0 -2.9 DNA-binding, ATP-dependent protease compare
PP_2370 -1.0 -2.2 conserved protein of unknown function compare
PP_0966 -1.0 -6.2 Histidinol dehydrogenase compare
PP_1326 -1.0 -2.6 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_t10 -0.9 -2.4 tRNA-Pro compare
PP_4034 -0.9 -4.1 N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 2 compare
PP_1216 -0.9 -1.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2650 -0.9 -3.4 putative 4-hydroxybutyrate dehydrogenase compare
PP_1328 -0.9 -1.8 Protein MraZ compare
PP_2136 -0.9 -2.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4136 -0.9 -1.1 Transcriptional regulator, LuxR family compare
PP_5128 -0.9 -5.5 Dihydroxy-acid dehydratase compare
PP_3064 -0.9 -1.8 Phage tail protein compare
PP_1702 -0.9 -2.0 Recombination-associated protein RdgC compare
PP_3821 -0.9 -6.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4058 -0.9 -6.4 1,4-alpha-glucan branching enzyme compare
PP_0153 -0.9 -1.8 hypothetical protein compare
PP_4363 -0.9 -5.1 Sensor histidine kinase/response regulator compare
PP_4678 -0.9 -6.6 Ketol-acid reductoisomerase compare
PP_1439 -0.9 -1.7 conserved exported protein of unknown function compare
PP_5289 -0.9 -2.9 Acetylglutamate kinase compare
PP_3234 -0.9 -3.0 Heat shock protein, HSP20 family compare
PP_0967 -0.8 -5.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0422 -0.8 -4.7 Indole-3-glycerol phosphate synthase compare
PP_5465 -0.8 -3.9 conserved protein of unknown function compare
PP_2499 -0.8 -1.4 conserved protein of unknown function compare
PP_1293 -0.8 -1.4 molybdopterin synthase small subunit compare
PP_1088 -0.8 -5.5 Argininosuccinate synthase compare
PP_4890 -0.8 -3.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_4036 -0.8 -3.7 D-hydantoinase/dihydropyrimidinase compare
PP_2168 -0.8 -4.1 Transaldolase compare
PP_2337 -0.8 -1.5 aconitate isomerase compare
PP_1079 -0.8 -3.4 Ornithine carbamoyltransferase compare
PP_2475 -0.8 -2.5 Transcriptional regulator, TetR family compare
PP_0164 -0.8 -4.2 conserved protein of unknown function compare
PP_5500 -0.8 -2.4 protein of unknown function compare
PP_2459 -0.8 -1.9 ribose pyranase compare
PP_2121 -0.8 -2.0 putative Lipoprotein compare
PP_5619 -0.8 -2.8 protein of unknown function compare
PP_0417 -0.8 -6.3 Anthranilate synthase component 1 compare
PP_4213 -0.7 -2.6 putative dipeptidase compare
PP_5014 -0.7 -1.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0420 -0.7 -4.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4035 -0.7 -4.4 putative PydP transporter, NCS1 nucleoside transporter family compare
PP_1124 -0.7 -2.4 conserved membrane protein of unknown function compare
PP_4680 -0.7 -5.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3637 -0.7 -1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3892 -0.7 -1.6 conserved protein of unknown function compare
PP_4168 -0.7 -2.5 conserved protein of unknown function compare
PP_1995 -0.7 -3.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2001 -0.7 -4.6 O-succinylhomoserine sulfhydrylase compare
PP_0182 -0.7 -2.1 conserved protein of unknown function compare
PP_5322 -0.7 -3.5 putative metal ion transporter compare
PP_0291 -0.7 -2.4 conserved protein of unknown function compare
PP_1062 -0.7 -1.9 MutT/nudix family protein compare
PP_0536 -0.7 -2.2 conserved protein of unknown function compare
PP_1381 -0.7 -0.9 4-carboxymuconolactone decarboxylase compare
PP_2793 -0.7 -1.3 Acyl-CoA dehydrogenase family protein compare
PP_4338 -0.7 -4.0 Chemotaxis histidine kinase CheA compare
PP_1294 -0.7 -2.3 molybdopterin synthase large subunit compare
PP_3511 -0.7 -3.8 Branched-chain-amino-acid aminotransferase compare
PP_3580 -0.7 -1.7 conserved protein of unknown function compare
PP_4060 -0.7 -4.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1654 -0.6 -1.6 cysteine synthase B compare
PP_4247 -0.6 -1.0 Exonuclease compare
PP_5121 -0.6 -2.6 conserved exported protein of unknown function compare
PP_2433 -0.6 -1.1 conserved protein of unknown function compare
PP_5483 -0.6 -1.5 conserved protein of unknown function compare
PP_3938 -0.6 -1.2 conserved protein of unknown function compare
PP_2681 -0.6 -1.2 coenzyme PQQ synthesis protein D compare
PP_3473 -0.6 -2.8 curli secretion and assembly outer membrane associated component compare
PP_1408 -0.6 -4.1 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_0775 -0.6 -1.1 conserved protein of unknown function compare
PP_1834 -0.6 -1.7 conserved protein of unknown function compare
PP_5430 -0.6 -2.6 protein of unknown function compare
PP_4679 -0.6 -3.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0846 -0.6 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_2000 -0.6 -1.0 amidophosphoribosyl transferase compare
PP_5230 -0.6 -1.8 Tyrosine recombinase XerC compare
PP_2442 -0.6 -1.4 conserved protein of unknown function, DUF480 family compare
PP_1353 -0.6 -0.4 conserved membrane protein of unknown function compare
PP_3762 -0.6 -2.6 Response regulator compare
PP_0673 -0.6 -1.3 conserved protein of unknown function compare
PP_1788 -0.6 -2.1 conserved protein of unknown function compare
PP_3000 -0.6 -1.8 MaoC domain protein compare
PP_3926 -0.6 -0.8 short-chain dehydrogenase compare
PP_0691 -0.6 -1.9 Glutamate 5-kinase compare
PP_5027 -0.6 -1.6 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5232 -0.6 -1.6 conserved protein of unknown function compare
PP_5098 -0.6 -3.6 methionine biosynthesis protein MetW compare
PP_1025 -0.6 -4.2 2-isopropylmalate synthase compare
PP_2320 -0.6 -4.8 conserved exported protein of unknown function compare
PP_4449 -0.6 -2.6 conserved protein of unknown function compare
PP_4271 -0.6 -0.6 conserved protein of unknown function compare
PP_t12 -0.6 -0.7 tRNA-Thr compare
PP_5097 -0.6 -3.9 homoserine O-acetyltransferase compare
PP_4050 -0.5 -4.6 glycogen synthase compare
PP_5367 -0.5 -2.6 Transketolase domain protein compare
PP_2440 -0.5 -3.1 Alkyl hydroperoxide reductase subunit F compare
PP_2090 -0.5 -1.5 Uroporphyrinogen-III C-methyltransferase compare
PP_5007 -0.5 -1.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2820 -0.5 -1.5 HTH-type transcriptional regulator nfxB compare
PP_2740 -0.5 -1.3 Transcriptional regulator, MerR family compare
PP_5003 -0.5 -3.2 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_2809 -0.5 -2.1 conserved membrane protein of unknown function compare
PP_2307 -0.5 -1.1 conserved protein of unknown function compare
PP_2547 -0.5 -1.6 Transcriptional regulator, LysR family compare
PP_2322 -0.5 -2.7 Major outer membrane lipoprotein compare
PP_5225 -0.5 -1.1 frataxin compare
PP_2118 -0.5 -1.9 conserved protein of unknown function compare
PP_3198 -0.5 -1.6 Ferredoxin, 2Fe-2S compare
PP_1217 -0.5 -1.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1926 -0.5 -1.7 putative phosphotyrosine-protein phosphatase compare
PP_4895 -0.5 -1.4 tRNA dimethylallyltransferase compare
PP_2960 -0.5 -2.4 transcriptional regulator, AraC family compare
PP_0414 -0.5 -2.2 Polyamine ABC transporter, permease protein compare
PP_0292 -0.5 -1.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1646 -0.5 -1.7 putative Thioredoxin compare
PP_3576 -0.5 -1.4 putative Transmembrane sensor compare
PP_1672 -0.5 -2.4 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1623 -0.5 -3.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_3035 -0.5 -0.9 conserved protein of unknown function compare
PP_3318 -0.5 -1.0 conserved protein of unknown function compare
PP_5167 -0.5 -1.5 conserved hypothetical protein compare
PP_2153 -0.5 -1.6 conserved protein of unknown function compare
PP_5671 -0.5 -2.5 conserved protein of unknown function compare
PP_2624 -0.5 -2.0 conserved protein of unknown function compare
PP_2073 -0.5 -1.7 Acetyltransferase, GNAT family compare
PP_4739 -0.5 -1.7 conserved protein of unknown function compare
PP_1679 -0.5 -1.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2677 -0.5 -1.3 conserved exported protein of unknown function compare
PP_1783 -0.5 -0.5 dTDP-glucose pyrophosphorylase compare
PP_3833 -0.5 -1.8 Response regulator compare
PP_2397 -0.5 -2.0 EF hand domain protein compare
PP_5303 -0.5 -1.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1632 -0.5 -0.8 conserved protein of unknown function compare
PP_4880 -0.5 -2.3 exoribonuclease R compare
PP_3081 -0.5 -1.5 conserved protein of unknown function compare
PP_4871 -0.4 -1.8 putative lysine decarboxylase family protein compare
PP_4314 -0.4 -1.7 conserved protein of unknown function compare
PP_4910 -0.4 -0.7 conserved protein of unknown function compare
PP_4925 -0.4 -1.5 conserved protein of unknown function compare
PP_4940 -0.4 -2.7 Putative glycosyltransferase compare
PP_t49 -0.4 -1.5 tRNA-Met compare
PP_4320 -0.4 -2.1 cytochrome c-type biogenesis protein compare
PP_1845 -0.4 -1.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_4835 -0.4 -0.8 conserved exported protein of unknown function compare
PP_1987 -0.4 -0.8 Methlytransferase, UbiE/COQ5 family compare
PP_0832 -0.4 -1.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0855 -0.4 -1.1 conserved protein of unknown function compare
PP_5227 -0.4 -2.4 diaminopimelate decarboxylase compare
PP_5000 -0.4 -1.1 peptidase component of the ATP-dependent HslVU protease compare
PP_0066 -0.4 -1.9 Ribosomal RNA small subunit methyltransferase B compare
PP_1435 -0.4 -1.5 DNA repair protein RecO compare
PP_3505 -0.4 -0.9 conserved protein of unknown function compare
PP_1147 -0.4 -1.7 conserved protein of unknown function compare
PP_4569 -0.4 -1.0 conserved protein of unknown function compare
PP_1578 -0.4 -2.6 conserved protein of unknown function compare
PP_0856 -0.4 -1.5 conserved lipoprotein of unknown function compare
PP_5748 -0.4 -0.9 cytochrome c heme lyase subunit compare
PP_2103 -0.4 -1.5 conserved protein of unknown function compare
PP_2030 -0.4 -1.3 conserved protein of unknown function compare
PP_1833 -0.4 -1.7 conserved protein of unknown function compare
PP_1224 -0.4 -1.9 periplasmic subunit of the TolQRA transport system compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source Hydantoin across organisms