Experiment set28IT018 for Pseudomonas putida KT2440

Compare to:

Butyrolactam nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.6 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -5.1 -6.0 3-isopropylmalate dehydratase small subunit compare
PP_0292 -5.0 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -4.8 -5.7 tryptophan synthase alpha chain compare
PP_4678 -4.7 -19.4 Ketol-acid reductoisomerase compare
PP_4999 -4.7 -3.2 dihydroorotase-like protein compare
PP_4724 -4.6 -11.7 Carbamoyl-phosphate synthase small chain compare
PP_1988 -4.6 -11.8 3-isopropylmalate dehydrogenase compare
PP_4680 -4.6 -17.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -4.4 -6.7 Acetylglutamate kinase compare
PP_2921 -4.4 -10.2 conserved protein of unknown function compare
PP_0083 -4.3 -5.2 tryptophan synthase beta chain compare
PP_5185 -4.3 -9.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2920 -4.3 -11.6 putative nitrogen-containing compound degradation enzyme compare
PP_4723 -4.2 -24.0 Carbamoyl-phosphate synthase large chain compare
PP_2088 -4.1 -6.2 RNA polymerase sigma factor SigX compare
PP_4909 -4.1 -12.2 phosphoserine phosphatase compare
PP_1079 -4.0 -8.5 Ornithine carbamoyltransferase compare
PP_1985 -4.0 -6.3 3-isopropylmalate dehydratase large subunit compare
PP_1088 -4.0 -15.0 Argininosuccinate synthase compare
PP_3511 -3.9 -10.1 Branched-chain-amino-acid aminotransferase compare
PP_0290 -3.9 -9.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5097 -3.9 -16.7 homoserine O-acetyltransferase compare
PP_0184 -3.9 -8.6 Argininosuccinate lyase compare
PP_2919 -3.8 -7.7 Transcriptional regulator, LysR family compare
PP_0691 -3.8 -6.9 Glutamate 5-kinase compare
PP_2922 -3.8 -6.4 Urea amidolyase-related protein compare
PP_0967 -3.7 -11.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5128 -3.7 -7.9 Dihydroxy-acid dehydratase compare
PP_0289 -3.6 -8.2 Imidazoleglycerol-phosphate dehydratase compare
PP_5155 -3.6 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4679 -3.6 -7.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2168 -3.5 -13.0 Transaldolase compare
PP_1995 -3.5 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5014 -3.5 -4.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0966 -3.4 -13.3 Histidinol dehydrogenase compare
PP_5098 -3.3 -10.7 methionine biosynthesis protein MetW compare
PP_0362 -3.2 -13.4 Biotin synthase compare
PP_4890 -3.2 -7.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_2001 -3.2 -14.8 O-succinylhomoserine sulfhydrylase compare
PP_0965 -2.9 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0422 -2.8 -9.7 Indole-3-glycerol phosphate synthase compare
PP_0417 -2.6 -15.2 Anthranilate synthase component 1 compare
PP_2370 -2.6 -3.7 conserved protein of unknown function compare
PP_0420 -2.6 -13.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2371 -2.5 -7.0 Sulphite reductase hemoprotein, beta subunit compare
PP_0421 -2.5 -8.3 Anthranilate phosphoribosyltransferase compare
PP_3999 -2.5 -5.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5090 -2.4 -3.2 putative cell division protein compare
PP_5095 -2.4 -2.7 pyrroline-5-carboxylate reductase compare
PP_5048 -2.2 -8.1 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4799 -2.1 -1.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1025 -2.0 -7.0 2-isopropylmalate synthase compare
PP_5227 -2.0 -8.4 diaminopimelate decarboxylase compare
PP_4058 -1.9 -12.3 1,4-alpha-glucan branching enzyme compare
PP_0339 -1.9 -6.0 Pyruvate dehydrogenase E1 component compare
PP_5015 -1.9 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2327 -1.7 -9.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1968 -1.7 -9.3 TetR family transcriptional regulator compare
PP_1231 -1.6 -5.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -1.6 -4.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4984 -1.4 -8.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2000 -1.3 -1.5 amidophosphoribosyl transferase compare
PP_0214 -1.3 -6.0 4-aminobutyrate aminotransferase compare
PP_0364 -1.3 -7.4 pimeloyl-[acp] methyl ester esterase compare
PP_5047 -1.2 -4.8 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1702 -1.2 -2.5 Recombination-associated protein RdgC compare
PP_5456 -1.2 -1.7 conserved protein of unknown function compare
PP_1654 -1.2 -2.5 cysteine synthase B compare
PP_0363 -1.1 -7.9 8-amino-7-oxononanoate synthase compare
PP_1224 -1.1 -5.5 periplasmic subunit of the TolQRA transport system compare
PP_1233 -1.1 -3.4 sulfurtransferase compare
PP_0365 -1.1 -5.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1198 -1.0 -2.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1468 -1.0 -2.4 Tyrosine recombinase XerD compare
PP_3105 -1.0 -2.5 conserved membrane protein of unknown function compare
PP_0556 -1.0 -2.5 Acetoin catabolism protein compare
PP_4910 -1.0 -1.5 conserved protein of unknown function compare
PP_4004 -1.0 -2.2 DNA translocase FtsK compare
PP_5104 -0.9 -6.3 thiazole synthase compare
PP_1352 -0.9 -3.5 UPF0234 protein PP_1352 compare
PP_3376 -0.9 -3.8 putative phosphonate dehydrogenase compare
PP_4684 -0.9 -5.6 conserved protein of unknown function with kinase-like domain compare
PP_2307 -0.9 -2.8 conserved protein of unknown function compare
PP_4964 -0.9 -1.4 D-erythrose 4-phosphate dehydrogenase compare
PP_0719 -0.9 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3241 -0.9 -1.9 conserved exported protein of unknown function compare
PP_4829 -0.9 -3.3 putative precorrin-3B synthase compare
PP_4504 -0.9 -2.3 conserved exported protein of unknown function compare
PP_0291 -0.9 -1.3 conserved protein of unknown function compare
PP_1860 -0.9 -3.9 Organic hydroperoxide resistance transcriptional regulator compare
PP_2433 -0.9 -3.1 conserved protein of unknown function compare
PP_0366 -0.8 -3.9 dethiobiotin synthetase compare
PP_2402 -0.8 -1.5 putative Sensor histidine kinase compare
PP_4738 -0.8 -2.9 conserved exported protein of unknown function compare
PP_0122 -0.8 -2.0 conserved exported protein of unknown function compare
PP_1994 -0.8 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_4875 -0.8 -2.9 conserved membrane protein of unknown function compare
PP_3539 -0.8 -2.6 putative Transcriptional regulator compare
PP_1734 -0.8 -0.5 Probable septum site-determining protein MinC compare
PP_5322 -0.8 -4.0 putative metal ion transporter compare
PP_4804 -0.8 -1.8 RlpA-like lipoprotein compare
PP_5475 -0.8 -1.4 conserved protein of unknown function compare
PP_5748 -0.8 -1.4 cytochrome c heme lyase subunit compare
PP_4895 -0.8 -2.1 tRNA dimethylallyltransferase compare
PP_1004 -0.8 -1.9 conserved protein of unknown function compare
PP_2378 -0.7 -0.9 Fe/S biogenesis protein NfuA compare
PP_2328 -0.7 -3.4 Phosphoadenosine phosphosulfate reductase compare
PP_3378 -0.7 -1.8 putative 2-ketogluconokinase compare
PP_2631 -0.7 -1.8 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1683 -0.7 -2.5 Transcriptional regulator, MarR family compare
PP_3043 -0.7 -1.1 conserved protein of unknown function compare
PP_1938 -0.7 -2.6 conserved protein of unknown function compare
PP_3409 -0.7 -2.2 putative Cobalamin biosynthesis protein cobE compare
PP_0957 -0.7 -1.8 D-arabinose 5-phosphate isomerase compare
PP_1697 -0.7 -2.4 transcriptional regulator, GntR family compare
PP_4696 -0.7 -2.8 Nitrogen regulation protein NR(I) compare
PP_1774 -0.7 -1.5 conserved exported protein of unknown function compare
PP_1415 -0.7 -2.5 putative membrane associated enzyme subunit compare
PP_3481 -0.7 -1.9 conserved exported protein of unknown function compare
PP_3551 -0.6 -1.7 DNA-binding response regulator, LuxR family compare
PP_3198 -0.6 -2.0 Ferredoxin, 2Fe-2S compare
PP_0319 -0.6 -1.1 conserved protein of unknown function compare
PP_4625 -0.6 -2.5 anti-holin regulator of holin CidA compare
PP_4793 -0.6 -1.2 conserved protein of unknown function compare
PP_3243 -0.6 -2.1 Acetyltransferase, GNAT family compare
PP_5110 -0.6 -1.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1673 -0.6 -3.2 cobyrinate a,c-diamide synthase compare
PP_1237 -0.6 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5546 -0.6 -1.7 conserved protein of unknown function compare
PP_5507 -0.6 -2.0 protein of unknown function compare
PP_3377 -0.6 -4.6 2-ketogluconate transporter, putative compare
PP_3908 -0.6 -2.0 conserved protein of unknown function compare
PP_3946 -0.6 -1.2 HTH-type transcriptional repressor NicR compare
PP_1589 -0.6 -4.2 uridylyltransferase compare
PP_0628 -0.6 -2.7 conserved protein of unknown function compare
PP_3286 -0.6 -2.3 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_5552 -0.6 -1.9 conserved protein of unknown function compare
PP_3164 -0.6 -2.0 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_2403 -0.6 -1.2 Chemotaxis protein CheY compare
PP_5146 -0.6 -3.2 RNA pyrophosphohydrolase compare
PP_2181 -0.6 -3.2 Transcriptional regulator, Cro/CI family compare
PP_3380 -0.6 -2.3 2-ketogluconate utilization repressor compare
PP_1217 -0.6 -1.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4981 -0.6 -1.5 polyisoprene-binding protein, acidic stress response factor compare
PP_2416 -0.6 -2.1 putative Iron ABC transporter, ATP-binding protein compare
PP_5331 -0.6 -2.0 Long-chain acyl-CoA thioester hydrolase compare
PP_5303 -0.6 -2.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5028 -0.6 -1.5 proline iminopeptidase compare
PP_4913 -0.5 -2.5 conserved protein of unknown function compare
PP_4782 -0.5 -1.8 Phosphomethylpyrimidine kinase compare
PP_1493 -0.5 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2765 -0.5 -1.5 putative Sulfonate monooxygenase MsuD compare
PP_1404 -0.5 -1.9 conserved protein of unknown function compare
PP_3245 -0.5 -1.0 conserved protein of unknown function compare
PP_4273 -0.5 -1.2 Transcriptional regulator, MerR family compare
PP_4879 -0.5 -1.5 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_4531 -0.5 -2.3 conserved exported protein of unknown function compare
PP_1435 -0.5 -2.4 DNA repair protein RecO compare
PP_4848 -0.5 -1.5 Curved DNA-binding protein compare
PP_5652 -0.5 -1.1 conserved protein of unknown function, phage origin compare
PP_5205 -0.5 -2.8 conserved protein of unknown function compare
PP_1605 -0.5 -1.3 Ribonuclease HII compare
PP_5248 -0.5 -1.0 putative hydrolase compare
PP_3762 -0.5 -1.7 Response regulator compare
PP_0001 -0.5 -0.7 probable chromosome-partitioning protein compare
PP_2160 -0.5 -2.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_2030 -0.5 -1.9 conserved protein of unknown function compare
PP_1214 -0.5 -1.3 putative transcriptional regulatory protein compare
PP_3235 -0.5 -2.8 conserved protein of unknown function compare
PP_5441 -0.5 -1.4 protein of unknown function compare
PP_5217 -0.5 -4.4 Polyphosphate kinase compare
PP_3473 -0.5 -1.8 curli secretion and assembly outer membrane associated component compare
PP_1353 -0.5 -0.4 conserved membrane protein of unknown function compare
PP_1876 -0.5 -2.0 putative ATP/GTP-binding protein of the AAA+ family compare
PP_5232 -0.5 -1.2 conserved protein of unknown function compare
PP_4271 -0.5 -0.6 conserved protein of unknown function compare
PP_2345 -0.5 -1.7 conserved exported protein of unknown function compare
PP_1326 -0.5 -1.4 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_t57 -0.5 -2.0 tRNA-Arg compare
PP_3110 -0.5 -1.1 protein of unknown function compare
PP_1664 -0.5 -1.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_3484 -0.5 -2.5 Response regulator receiver protein compare
PP_3000 -0.5 -1.5 MaoC domain protein compare
PP_5328 -0.5 -1.4 putative phosphate transport system permease protein compare
PP_2253 -0.4 -1.1 Transcriptional regulator, GntR family compare
PP_1679 -0.4 -1.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1324 -0.4 -2.0 putative endonuclease distantly related to archaeal Holliday junction resolvase compare
PP_1128 -0.4 -1.5 OmpA family protein compare
PP_3392 -0.4 -1.5 conserved protein of unknown function compare
PP_3803 -0.4 -2.3 putative Cation ABC transporter, permease protein compare
PP_4238 -0.4 -1.2 conserved protein of unknown function compare
PP_0425 -0.4 -1.3 conserved protein of unknown function compare
PP_1320 -0.4 -3.0 stringent starvation protein A compare
PP_3102 -0.4 -1.9 conserved protein of unknown function compare
PP_1548 -0.4 -1.6 conserved protein of unknown function compare
PP_1788 -0.4 -1.3 conserved protein of unknown function compare
PP_2302 -0.4 -1.5 DNA-binding, ATP-dependent protease compare
PP_3580 -0.4 -1.5 conserved protein of unknown function compare
PP_2784 -0.4 -1.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Butyrolactam in Pseudomonas putida KT2440

For nitrogen source Butyrolactam across organisms