Experiment set28IT017 for Pseudomonas putida KT2440

Compare to:

Butyrolactam nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1986 -6.7 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_0290 -6.1 -9.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1985 -5.9 -7.0 3-isopropylmalate dehydratase large subunit compare
PP_0293 -5.6 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4724 -5.1 -15.4 Carbamoyl-phosphate synthase small chain compare
PP_2922 -5.1 -6.1 Urea amidolyase-related protein compare
PP_4680 -4.9 -18.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0083 -4.9 -3.4 tryptophan synthase beta chain compare
PP_1988 -4.8 -10.9 3-isopropylmalate dehydrogenase compare
PP_5155 -4.8 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2920 -4.7 -11.9 putative nitrogen-containing compound degradation enzyme compare
PP_2919 -4.6 -11.5 Transcriptional regulator, LysR family compare
PP_4678 -4.5 -18.2 Ketol-acid reductoisomerase compare
PP_2921 -4.4 -9.3 conserved protein of unknown function compare
PP_0967 -4.4 -14.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3511 -4.4 -11.9 Branched-chain-amino-acid aminotransferase compare
PP_5185 -4.3 -9.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4723 -4.3 -22.4 Carbamoyl-phosphate synthase large chain compare
PP_0082 -4.2 -6.4 tryptophan synthase alpha chain compare
PP_0292 -4.2 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4909 -4.2 -12.0 phosphoserine phosphatase compare
PP_1088 -4.1 -14.5 Argininosuccinate synthase compare
PP_5128 -4.1 -10.5 Dihydroxy-acid dehydratase compare
PP_5098 -4.0 -10.6 methionine biosynthesis protein MetW compare
PP_4890 -4.0 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0184 -3.9 -9.5 Argininosuccinate lyase compare
PP_0289 -3.9 -10.3 Imidazoleglycerol-phosphate dehydratase compare
PP_5014 -3.8 -4.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0965 -3.8 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2168 -3.7 -13.1 Transaldolase compare
PP_4679 -3.7 -9.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -3.7 -11.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0422 -3.7 -6.8 Indole-3-glycerol phosphate synthase compare
PP_1079 -3.6 -9.5 Ornithine carbamoyltransferase compare
PP_0691 -3.6 -8.0 Glutamate 5-kinase compare
PP_0966 -3.6 -11.9 Histidinol dehydrogenase compare
PP_5097 -3.6 -15.8 homoserine O-acetyltransferase compare
PP_5289 -3.4 -6.9 Acetylglutamate kinase compare
PP_0362 -3.4 -13.0 Biotin synthase compare
PP_2001 -3.2 -9.4 O-succinylhomoserine sulfhydrylase compare
PP_0420 -3.0 -11.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2088 -2.9 -4.7 RNA polymerase sigma factor SigX compare
PP_0421 -2.7 -7.9 Anthranilate phosphoribosyltransferase compare
PP_0417 -2.6 -17.1 Anthranilate synthase component 1 compare
PP_5048 -2.5 -7.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2371 -2.5 -6.9 Sulphite reductase hemoprotein, beta subunit compare
PP_5095 -2.4 -2.2 pyrroline-5-carboxylate reductase compare
PP_5227 -2.4 -9.1 diaminopimelate decarboxylase compare
PP_0339 -2.3 -6.0 Pyruvate dehydrogenase E1 component compare
PP_4999 -2.3 -3.0 dihydroorotase-like protein compare
PP_3999 -2.1 -6.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4799 -2.1 -1.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2370 -2.0 -3.5 conserved protein of unknown function compare
PP_1025 -2.0 -6.6 2-isopropylmalate synthase compare
PP_4058 -2.0 -11.0 1,4-alpha-glucan branching enzyme compare
PP_1654 -1.9 -3.7 cysteine synthase B compare
PP_1468 -1.9 -3.3 Tyrosine recombinase XerD compare
PP_1968 -1.9 -9.8 TetR family transcriptional regulator compare
PP_4004 -1.8 -2.6 DNA translocase FtsK compare
PP_5047 -1.7 -6.3 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0291 -1.6 -2.5 conserved protein of unknown function compare
PP_2327 -1.5 -7.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1994 -1.5 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_5015 -1.5 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0787 -1.3 -5.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4984 -1.3 -9.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3376 -1.3 -4.9 putative phosphonate dehydrogenase compare
PP_0214 -1.3 -5.9 4-aminobutyrate aminotransferase compare
PP_0364 -1.3 -6.9 pimeloyl-[acp] methyl ester esterase compare
PP_4782 -1.2 -3.8 Phosphomethylpyrimidine kinase compare
PP_2328 -1.2 -5.4 Phosphoadenosine phosphosulfate reductase compare
PP_4126 -1.2 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_0365 -1.2 -7.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1216 -1.2 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2302 -1.2 -3.5 DNA-binding, ATP-dependent protease compare
PP_0366 -1.2 -4.5 dethiobiotin synthetase compare
PP_0363 -1.2 -7.6 8-amino-7-oxononanoate synthase compare
PP_1231 -1.1 -4.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5230 -1.1 -2.9 Tyrosine recombinase XerC compare
PP_1233 -1.1 -4.4 sulfurtransferase compare
PP_5104 -1.1 -6.1 thiazole synthase compare
PP_1366 -1.1 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_2575 -1.0 -1.7 conserved exported protein of unknown function compare
PP_2044 -1.0 -2.1 conserved inner membrane protein of unknown function compare
PP_1783 -1.0 -0.7 dTDP-glucose pyrophosphorylase compare
PP_4804 -1.0 -2.0 RlpA-like lipoprotein compare
PP_1217 -1.0 -2.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4684 -1.0 -5.9 conserved protein of unknown function with kinase-like domain compare
PP_1224 -1.0 -4.7 periplasmic subunit of the TolQRA transport system compare
PP_3946 -0.9 -1.9 HTH-type transcriptional repressor NicR compare
PP_1068 -0.9 -2.8 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_1097 -0.9 -1.0 Methionine--tRNA ligase compare
PP_5322 -0.9 -5.3 putative metal ion transporter compare
PP_3377 -0.9 -6.9 2-ketogluconate transporter, putative compare
PP_0607 -0.9 -1.6 putative Type IV pili biogenesis protein FimT compare
PP_2087 -0.8 -2.2 CmpX protein compare
PP_2000 -0.8 -1.2 amidophosphoribosyl transferase compare
PP_1198 -0.8 -2.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3926 -0.8 -2.0 short-chain dehydrogenase compare
PP_5748 -0.8 -1.7 cytochrome c heme lyase subunit compare
PP_2142 -0.8 -2.4 Cell division inhibitor SulA compare
PP_2653 -0.8 -2.7 Transcriptional regulator, Cro/CI family compare
PP_2345 -0.8 -2.7 conserved exported protein of unknown function compare
PP_4109 -0.8 -2.6 conserved protein of unknown function compare
PP_0673 -0.8 -2.3 conserved protein of unknown function compare
PP_1326 -0.8 -2.9 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2433 -0.7 -2.0 conserved protein of unknown function compare
PP_2677 -0.7 -2.7 conserved exported protein of unknown function compare
PP_1824 -0.7 -1.6 Smr domain protein compare
PP_5279 -0.7 -2.0 conserved protein of unknown function compare
PP_5652 -0.7 -1.9 conserved protein of unknown function, phage origin compare
PP_5090 -0.7 -1.1 putative cell division protein compare
PP_4199 -0.7 -0.9 putative Lipoprotein compare
PP_0719 -0.7 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5471 -0.7 -2.0 putative response regulator receiver protein compare
PP_4531 -0.6 -2.8 conserved exported protein of unknown function compare
PP_0401 -0.6 -0.9 Ribosomal RNA small subunit methyltransferase A compare
PP_1697 -0.6 -1.5 transcriptional regulator, GntR family compare
PP_2306 -0.6 -1.1 conserved exported protein of unknown function compare
PP_5654 -0.6 -1.7 putative phosphotriesterase compare
PP_5338 -0.6 -1.0 aspartate ammonia-lyase compare
PP_4258 -0.6 -2.6 cytochrome c oxidase subunit, cbb3-type compare
PP_3245 -0.6 -1.3 conserved protein of unknown function compare
PP_4696 -0.6 -2.7 Nitrogen regulation protein NR(I) compare
PP_3384 -0.6 -2.3 gluconate 2-dehydrogenase gamma subunit compare
PP_3883 -0.6 -1.4 putative Phage holin compare
PP_4910 -0.6 -1.0 conserved protein of unknown function compare
PP_2414 -0.6 -1.3 conserved exported protein of unknown function compare
PP_2129 -0.6 -2.3 conserved protein of unknown function compare
PP_1304 -0.6 -3.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2765 -0.6 -1.7 putative Sulfonate monooxygenase MsuD compare
PP_1632 -0.6 -1.4 conserved protein of unknown function compare
PP_1066 -0.6 -2.1 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0893 -0.6 -2.3 ThiJ/PfpI family protein compare
PP_5233 -0.6 -4.0 ammonium transporter AmtB compare
PP_5110 -0.6 -1.3 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2756 -0.6 -1.5 conserved protein of unknown function compare
PP_4364 -0.6 -3.1 putative Anti-sigma F factor antagonist compare
PP_1005 -0.6 -2.6 Heme oxygenase compare
PP_1536 -0.5 -1.3 conserved protein of unknown function compare
PP_2847 -0.5 -1.4 Urease accessory protein UreJ compare
PP_2028 -0.5 -2.2 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_1589 -0.5 -3.6 uridylyltransferase compare
PP_3519 -0.5 -0.9 putative Lipoprotein compare
PP_1036 -0.5 -2.6 membrane-bound lytic murein transglycosylase F compare
PP_1734 -0.5 -0.6 Probable septum site-determining protein MinC compare
PP_5507 -0.5 -1.5 protein of unknown function compare
PP_1552 -0.5 -1.5 putative Phage replication protein compare
PP_1731 -0.5 -2.5 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_2029 -0.5 -0.9 von Willebrand factor type A domain protein compare
PP_4593 -0.5 -1.2 conserved protein of unknown function compare
PP_5240 -0.5 -1.2 Response regulator compare
PP_4066 -0.5 -1.8 methylglutaconyl-CoA hydratase compare
PP_4726 -0.5 -1.6 Chaperone protein DnaJ compare
PP_2475 -0.5 -2.0 Transcriptional regulator, TetR family compare
PP_1814 -0.5 -2.8 conserved protein of unknown function compare
PP_4895 -0.5 -1.5 tRNA dimethylallyltransferase compare
PP_1110 -0.5 -2.4 serine acetyltransferase compare
PP_2820 -0.5 -1.3 HTH-type transcriptional regulator nfxB compare
PP_0122 -0.5 -1.8 conserved exported protein of unknown function compare
PP_1353 -0.5 -0.4 conserved membrane protein of unknown function compare
PP_3637 -0.5 -0.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1774 -0.5 -1.2 conserved exported protein of unknown function compare
PP_5008 -0.5 -1.2 Poly granule-associated protein compare
PP_0771 -0.5 -2.2 mRNA interferase compare
PP_2858 -0.5 -1.0 conserved exported protein of unknown function compare
PP_5201 -0.5 -1.0 conserved protein of unknown function, UPF0149 family compare
PP_4296 -0.5 -1.1 conserved exported protein of unknown function compare
PP_5217 -0.5 -4.5 Polyphosphate kinase compare
PP_5552 -0.5 -1.8 conserved protein of unknown function compare
PP_1664 -0.5 -1.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_3378 -0.5 -0.8 putative 2-ketogluconokinase compare
PP_0152 -0.5 -1.5 conserved exported protein of unknown function compare
PP_1293 -0.5 -0.9 molybdopterin synthase small subunit compare
PP_1733 -0.5 -0.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_3014 -0.5 -1.4 conserved exported protein of unknown function compare
PP_1435 -0.5 -1.9 DNA repair protein RecO compare
PP_4212 -0.5 -1.9 pyoverdine biosynthesis related protein compare
PP_1303 -0.5 -3.0 Sulfate adenylyltransferase subunit 2 compare
PP_0332 -0.5 -1.5 putative Acyltransferase compare
PP_3380 -0.5 -1.8 2-ketogluconate utilization repressor compare
PP_2821 -0.5 -2.3 conserved exported protein of unknown function compare
PP_4426 -0.5 -1.7 Amino acid ABC transporter, permease protein compare
PP_5331 -0.4 -1.8 Long-chain acyl-CoA thioester hydrolase compare
PP_4301 -0.4 -1.5 Pyruvate kinase compare
PP_4271 -0.4 -0.6 conserved protein of unknown function compare
PP_3892 -0.4 -1.2 conserved protein of unknown function compare
PP_1493 -0.4 -1.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0685 -0.4 -1.3 conserved protein of unknown function compare
PP_0569 -0.4 -2.6 MATE efflux family protein compare
PP_5177 -0.4 -2.7 spermidine/putrescine ABC transporter - permease subunit compare
PP_2307 -0.4 -1.3 conserved protein of unknown function compare
PP_1845 -0.4 -1.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_3241 -0.4 -1.0 conserved exported protein of unknown function compare
PP_5621 -0.4 -0.9 protein of unknown function compare
PP_2826 -0.4 -2.1 Transcriptional regulator MexT compare
PP_0513 -0.4 -1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1320 -0.4 -2.7 stringent starvation protein A compare
PP_2654 -0.4 -2.3 putative Glutathione S-transferase compare
PP_4162 -0.4 -1.6 conserved membrane protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Butyrolactam in Pseudomonas putida KT2440

For nitrogen source Butyrolactam across organisms