Experiment set28IT016 for Pseudomonas putida KT2440

Compare to:

4-Aminobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4364 -6.1 -8.3 putative Anti-sigma F factor antagonist compare
PP_0293 -5.6 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0809 -5.6 -14.5 disulfide bond formation protein B compare
PP_0290 -5.6 -10.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -5.5 -10.5 phosphoserine phosphatase compare
PP_0127 -5.4 -11.4 Thiol:disulfide interchange protein compare
PP_4943 -5.1 -3.5 putative Glycosyl transferase compare
PP_1079 -5.0 -9.2 Ornithine carbamoyltransferase compare
PP_0164 -5.0 -10.6 conserved protein of unknown function compare
PP_0967 -4.9 -13.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1088 -4.9 -14.8 Argininosuccinate synthase compare
PP_4890 -4.8 -8.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_0966 -4.7 -13.9 Histidinol dehydrogenase compare
PP_1988 -4.6 -12.3 3-isopropylmalate dehydrogenase compare
PP_4940 -4.6 -11.1 Putative glycosyltransferase compare
PP_4724 -4.5 -10.6 Carbamoyl-phosphate synthase small chain compare
PP_1231 -4.4 -8.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0083 -4.3 -6.6 tryptophan synthase beta chain compare
PP_1985 -4.3 -8.1 3-isopropylmalate dehydratase large subunit compare
PP_0184 -4.2 -9.3 Argininosuccinate lyase compare
PP_0420 -4.2 -14.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4723 -4.1 -26.8 Carbamoyl-phosphate synthase large chain compare
PP_1995 -4.1 -10.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3511 -4.0 -10.7 Branched-chain-amino-acid aminotransferase compare
PP_0417 -4.0 -19.1 Anthranilate synthase component 1 compare
PP_0082 -3.9 -7.1 tryptophan synthase alpha chain compare
PP_0787 -3.9 -5.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0965 -3.9 -12.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4999 -3.9 -3.7 dihydroorotase-like protein compare
PP_5185 -3.9 -9.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4678 -3.9 -17.6 Ketol-acid reductoisomerase compare
PP_0421 -3.8 -8.6 Anthranilate phosphoribosyltransferase compare
PP_3821 -3.8 -15.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0289 -3.7 -8.4 Imidazoleglycerol-phosphate dehydratase compare
PP_4680 -3.6 -17.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -3.6 -6.4 3-isopropylmalate dehydratase small subunit compare
PP_2371 -3.5 -7.3 Sulphite reductase hemoprotein, beta subunit compare
PP_5155 -3.5 -4.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5097 -3.4 -17.1 homoserine O-acetyltransferase compare
PP_5014 -3.3 -5.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_5098 -3.2 -9.7 methionine biosynthesis protein MetW compare
PP_4679 -3.2 -10.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3484 -3.2 -7.4 Response regulator receiver protein compare
PP_5289 -3.1 -5.5 Acetylglutamate kinase compare
PP_0422 -3.1 -6.2 Indole-3-glycerol phosphate synthase compare
PP_5128 -3.1 -8.1 Dihydroxy-acid dehydratase compare
PP_0691 -2.9 -6.3 Glutamate 5-kinase compare
PP_0292 -2.9 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4936 -2.8 -10.0 O-antigen polymerase compare
PP_2370 -2.8 -4.1 conserved protein of unknown function compare
PP_2001 -2.8 -12.6 O-succinylhomoserine sulfhydrylase compare
PP_2390 -2.8 -11.9 Transcriptional regulator, LysR family compare
PP_0914 -2.7 -11.7 GGDEF domain protein compare
PP_1779 -2.7 -9.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1776 -2.6 -18.5 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1801 -2.6 -14.5 Glycosyl transferase WbpY compare
PP_1025 -2.6 -9.2 2-isopropylmalate synthase compare
PP_1994 -2.5 -2.9 tRNA pseudouridine (38-40)synthase compare
PP_4938 -2.5 -10.6 putative Glycosyl transferase compare
PP_2414 -2.5 -1.7 conserved exported protein of unknown function compare
PP_1804 -2.5 -12.6 Glycosyl transferase WbpL compare
PP_1778 -2.5 -7.9 Lipopolysaccharide ABC export system, permease protein compare
PP_1802 -2.4 -17.2 glycosyl transferase compare
PP_0291 -2.3 -3.4 conserved protein of unknown function compare
PP_2388 -2.3 -7.3 Transporter, LysE family compare
PP_1805 -2.2 -16.7 Polysaccharide biosynthesis protein compare
PP_1799 -2.2 -12.9 GDP-mannose 4,6-dehydratase compare
PP_2327 -2.2 -11.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4799 -2.2 -1.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1800 -2.2 -12.5 Oxidoreductase Rmd compare
PP_1780 -2.2 -16.6 putative mannosyltransferase compare
PP_5303 -2.1 -4.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0719 -2.0 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3999 -2.0 -6.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4004 -1.9 -2.8 DNA translocase FtsK compare
PP_1110 -1.9 -4.6 serine acetyltransferase compare
PP_5015 -1.8 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1912 -1.8 -4.8 Phosphate acyltransferase compare
PP_1493 -1.8 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1468 -1.8 -3.7 Tyrosine recombinase XerD compare
PP_0214 -1.8 -7.1 4-aminobutyrate aminotransferase compare
PP_2328 -1.8 -6.7 Phosphoadenosine phosphosulfate reductase compare
PP_5095 -1.7 -2.2 pyrroline-5-carboxylate reductase compare
PP_0401 -1.7 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PP_0339 -1.6 -5.8 Pyruvate dehydrogenase E1 component compare
PP_2402 -1.6 -2.7 putative Sensor histidine kinase compare
PP_1664 -1.6 -3.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_1656 -1.4 -8.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_1999 -1.3 -2.6 membrane protein required for colicin V production compare
PP_5571 -1.2 -1.7 conserved protein of unknown function compare
PP_1111 -1.2 -4.4 putative Synthetase compare
PP_1109 -1.2 -8.2 Transcriptional regulator, GntR family compare
PP_5350 -1.1 -5.1 Transcriptional regulator, RpiR family compare
PP_1426 -1.1 -8.7 L-aspartate oxidase compare
PP_4058 -1.1 -7.6 1,4-alpha-glucan branching enzyme compare
PP_1217 -1.1 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1702 -1.1 -2.5 Recombination-associated protein RdgC compare
PP_4828 -1.1 -1.6 Precorrin-8X methylmutase compare
PP_2280 -1.1 -2.8 conserved protein of unknown function compare
PP_2000 -1.1 -1.4 amidophosphoribosyl transferase compare
PP_1022 -1.1 -4.3 glucose 6-phosphate-1-dehydrogenase compare
PP_1237 -1.1 -1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1020 -1.0 -3.1 putative glucose-6-phosphate 1-epimerase compare
PP_2018 -1.0 -5.0 adhesin-associated BNR repeat protein (from data) compare
PP_4136 -1.0 -1.3 Transcriptional regulator, LuxR family compare
PP_4722 -1.0 -4.2 Transcription elongation factor GreA compare
PP_0888 -1.0 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_3902 -1.0 -2.5 conserved protein of unknown function compare
PP_1761 -0.9 -6.7 diguanylate cyclase with phosphodiesterase domain compare
PP_4874 -0.9 -0.8 50S ribosomal protein L9 compare
PP_1366 -0.9 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_3946 -0.9 -1.5 HTH-type transcriptional repressor NicR compare
PP_1233 -0.9 -3.5 sulfurtransferase compare
PP_5227 -0.8 -4.8 diaminopimelate decarboxylase compare
PP_0406 -0.8 -3.1 Nucleotidyltransferase family protein compare
PP_5048 -0.8 -4.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4804 -0.8 -1.8 RlpA-like lipoprotein compare
PP_4268 -0.8 -1.2 nucleoid-associated broad specificity regulator compare
PP_4952 -0.8 -1.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4700 -0.8 -2.9 pantothenate synthetase compare
PP_2389 -0.8 -2.4 conserved protein of unknown function compare
PP_3892 -0.8 -1.8 conserved protein of unknown function compare
PP_0833 -0.8 -2.3 queuine tRNA-ribosyltransferase compare
PP_3241 -0.8 -1.6 conserved exported protein of unknown function compare
PP_2302 -0.7 -2.4 DNA-binding, ATP-dependent protease compare
PP_4910 -0.7 -1.3 conserved protein of unknown function compare
PP_3899 -0.7 -1.7 conserved protein of unknown function, hicB family compare
PP_3884 -0.7 -3.8 Phage holin, lambda family compare
PP_5322 -0.7 -3.4 putative metal ion transporter compare
PP_4942 -0.7 -2.2 conserved protein of unknown function compare
PP_0775 -0.7 -1.3 conserved protein of unknown function compare
PP_1876 -0.7 -2.2 putative ATP/GTP-binding protein of the AAA+ family compare
PP_0948 -0.7 -1.3 Phosphocarrier protein HPr compare
PP_3551 -0.7 -1.1 DNA-binding response regulator, LuxR family compare
PP_4593 -0.7 -1.5 conserved protein of unknown function compare
PP_2247 -0.7 -2.1 putative Endoribonuclease compare
PP_5610 -0.7 -1.5 protein of unknown function compare
PP_4897 -0.7 -2.7 N-acetylmuramoyl-L-alanine amidase compare
PP_2575 -0.7 -1.5 conserved exported protein of unknown function compare
PP_5331 -0.7 -2.9 Long-chain acyl-CoA thioester hydrolase compare
PP_4739 -0.7 -2.3 conserved protein of unknown function compare
PP_4997 -0.7 -1.4 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5337 -0.7 -2.1 LysR family transcriptional regulator compare
PP_1216 -0.7 -1.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5393 -0.7 -0.9 putative metal-binding chaperone compare
PP_2340 -0.7 -2.1 conserved protein of unknown function compare
PP_4880 -0.7 -3.4 exoribonuclease R compare
PP_2459 -0.7 -1.4 ribose pyranase compare
PP_0855 -0.7 -2.5 conserved protein of unknown function compare
PP_5552 -0.7 -1.9 conserved protein of unknown function compare
PP_3239 -0.6 -1.6 putative cointegrate resolution protein T Tn4652 compare
PP_2499 -0.6 -1.0 conserved protein of unknown function compare
PP_4917 -0.6 -1.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5035 -0.6 -4.3 Histidine utilization repressor compare
PP_5248 -0.6 -1.1 putative hydrolase compare
PP_3662 -0.6 -3.8 conserved protein of unknown function compare
PP_4517 -0.6 -1.5 conserved protein of unknown function compare
PP_5110 -0.6 -1.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0735 -0.6 -1.0 molybdopterin-synthase adenylyltransferase compare
PP_2868 -0.6 -3.5 Transcriptional regulator, Cro/CI family compare
PP_4471 -0.6 -1.2 Magnesium transporter compare
PP_1926 -0.6 -3.0 putative phosphotyrosine-protein phosphatase compare
PP_5367 -0.6 -2.8 Transketolase domain protein compare
PP_5008 -0.6 -1.3 Poly granule-associated protein compare
PP_5076 -0.6 -5.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_5075 -0.6 -4.6 glutamate synthase (NADPH) beta subunit compare
PP_1589 -0.6 -3.8 uridylyltransferase compare
PP_4944 -0.6 -1.8 Carbamoyltransferase compare
PP_4984 -0.6 -4.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4631 -0.6 -2.3 conserved protein of unknown function compare
PP_5338 -0.6 -0.9 aspartate ammonia-lyase compare
PP_3244 -0.6 -2.1 Magnesium transporter, MgtC family compare
PP_0766 -0.6 -4.6 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_4696 -0.6 -2.2 Nitrogen regulation protein NR(I) compare
PP_2191 -0.6 -2.2 putative Lipoprotein compare
PP_2387 -0.6 -2.0 conserved protein of unknown function compare
PP_4581 -0.6 -2.0 putative amidotransferase compare
PP_2322 -0.6 -4.6 Major outer membrane lipoprotein compare
PP_1575 -0.6 -1.0 conserved protein of unknown function compare
PP_1026 -0.6 -1.4 Peptidase, M23/M37 family compare
PP_1770 -0.5 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1672 -0.5 -3.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1303 -0.5 -3.4 Sulfate adenylyltransferase subunit 2 compare
PP_5604 -0.5 -0.7 putative subtilisin-like serine protease compare
PP_0711 -0.5 -2.3 putative hydrolase compare
PP_5047 -0.5 -2.6 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4369 -0.5 -3.3 Flagellar M-ring protein compare
PP_4005 -0.5 -1.8 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_5621 -0.5 -1.2 protein of unknown function compare
PP_4338 -0.5 -3.9 Chemotaxis histidine kinase CheA compare
PP_0949 -0.5 -2.4 putative ATP-binding protein UPF0042 compare
PP_4370 -0.5 -2.5 Flagellar hook-basal body complex protein FliE compare
PP_3590 -0.5 -3.0 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1008 -0.5 -1.4 RNA polymerase subunit sigma-24 compare
PP_2960 -0.5 -2.8 transcriptional regulator, AraC family compare
PP_2543 -0.5 -3.4 gamma-aminobutyrate permease compare
PP_4829 -0.5 -1.6 putative precorrin-3B synthase compare
PP_2756 -0.5 -1.6 conserved protein of unknown function compare
PP_3378 -0.5 -1.2 putative 2-ketogluconokinase compare
PP_1748 -0.5 -1.9 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source 4-Aminobutyric acid across organisms