Experiment set28IT015 for Pseudomonas putida KT2440

Compare to:

4-Aminobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0290 -6.0 -10.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0293 -5.6 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0289 -4.8 -10.5 Imidazoleglycerol-phosphate dehydratase compare
PP_4909 -4.8 -11.9 phosphoserine phosphatase compare
PP_1995 -4.8 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0082 -4.6 -6.3 tryptophan synthase alpha chain compare
PP_0292 -4.6 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0966 -4.6 -14.2 Histidinol dehydrogenase compare
PP_0164 -4.6 -11.4 conserved protein of unknown function compare
PP_1079 -4.5 -9.7 Ornithine carbamoyltransferase compare
PP_4678 -4.5 -19.8 Ketol-acid reductoisomerase compare
PP_0417 -4.4 -19.9 Anthranilate synthase component 1 compare
PP_0083 -4.3 -6.6 tryptophan synthase beta chain compare
PP_0967 -4.3 -13.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0420 -4.3 -14.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3511 -4.3 -11.9 Branched-chain-amino-acid aminotransferase compare
PP_0127 -4.3 -7.9 Thiol:disulfide interchange protein compare
PP_4724 -4.2 -13.1 Carbamoyl-phosphate synthase small chain compare
PP_4890 -4.2 -7.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_4723 -4.1 -22.3 Carbamoyl-phosphate synthase large chain compare
PP_1986 -4.1 -5.4 3-isopropylmalate dehydratase small subunit compare
PP_1088 -4.0 -14.1 Argininosuccinate synthase compare
PP_5155 -4.0 -8.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5185 -4.0 -8.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1988 -4.0 -9.7 3-isopropylmalate dehydrogenase compare
PP_0184 -3.9 -9.3 Argininosuccinate lyase compare
PP_4364 -3.9 -5.9 putative Anti-sigma F factor antagonist compare
PP_0809 -3.8 -14.2 disulfide bond formation protein B compare
PP_4680 -3.8 -17.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -3.8 -6.4 Acetylglutamate kinase compare
PP_0422 -3.7 -8.3 Indole-3-glycerol phosphate synthase compare
PP_1985 -3.6 -8.5 3-isopropylmalate dehydratase large subunit compare
PP_4679 -3.4 -9.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0691 -3.3 -7.2 Glutamate 5-kinase compare
PP_5014 -3.3 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0787 -3.2 -6.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3821 -3.2 -13.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0421 -3.1 -7.7 Anthranilate phosphoribosyltransferase compare
PP_5128 -3.1 -9.1 Dihydroxy-acid dehydratase compare
PP_0965 -3.1 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1231 -3.0 -6.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5098 -3.0 -10.5 methionine biosynthesis protein MetW compare
PP_3484 -2.9 -6.5 Response regulator receiver protein compare
PP_4940 -2.9 -10.8 Putative glycosyltransferase compare
PP_2390 -2.8 -9.9 Transcriptional regulator, LysR family compare
PP_5097 -2.8 -13.5 homoserine O-acetyltransferase compare
PP_1025 -2.7 -11.2 2-isopropylmalate synthase compare
PP_4999 -2.7 -3.1 dihydroorotase-like protein compare
PP_2001 -2.7 -12.5 O-succinylhomoserine sulfhydrylase compare
PP_0914 -2.6 -12.0 GGDEF domain protein compare
PP_2388 -2.5 -6.4 Transporter, LysE family compare
PP_4943 -2.4 -3.6 putative Glycosyl transferase compare
PP_0214 -2.4 -8.7 4-aminobutyrate aminotransferase compare
PP_2371 -2.4 -7.0 Sulphite reductase hemoprotein, beta subunit compare
PP_5015 -2.4 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1801 -2.3 -12.1 Glycosyl transferase WbpY compare
PP_1912 -2.3 -7.9 Phosphate acyltransferase compare
PP_0339 -2.2 -6.3 Pyruvate dehydrogenase E1 component compare
PP_3999 -2.2 -6.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1779 -2.2 -8.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2327 -2.2 -11.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1804 -2.2 -10.8 Glycosyl transferase WbpL compare
PP_4799 -2.2 -1.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1776 -2.1 -16.6 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1799 -2.1 -15.2 GDP-mannose 4,6-dehydratase compare
PP_2414 -2.1 -1.8 conserved exported protein of unknown function compare
PP_1994 -2.1 -3.0 tRNA pseudouridine (38-40)synthase compare
PP_0291 -2.1 -2.3 conserved protein of unknown function compare
PP_4938 -2.1 -9.9 putative Glycosyl transferase compare
PP_1805 -2.0 -16.8 Polysaccharide biosynthesis protein compare
PP_1802 -2.0 -14.8 glycosyl transferase compare
PP_1800 -1.9 -13.0 Oxidoreductase Rmd compare
PP_1780 -1.9 -15.7 putative mannosyltransferase compare
PP_1110 -1.9 -4.9 serine acetyltransferase compare
PP_2328 -1.9 -7.1 Phosphoadenosine phosphosulfate reductase compare
PP_2370 -1.9 -2.7 conserved protein of unknown function compare
PP_4936 -1.9 -7.9 O-antigen polymerase compare
PP_1493 -1.8 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5303 -1.7 -4.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1293 -1.7 -2.2 molybdopterin synthase small subunit compare
PP_1664 -1.6 -3.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_1778 -1.5 -6.6 Lipopolysaccharide ABC export system, permease protein compare
PP_1216 -1.4 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4700 -1.4 -4.6 pantothenate synthetase compare
PP_5114 -1.4 -2.2 putative adenine methyltransferase compare
PP_1109 -1.4 -10.2 Transcriptional regulator, GntR family compare
PP_4910 -1.3 -1.8 conserved protein of unknown function compare
PP_0719 -1.2 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0833 -1.2 -1.9 queuine tRNA-ribosyltransferase compare
PP_4058 -1.2 -8.6 1,4-alpha-glucan branching enzyme compare
PP_3926 -1.1 -2.6 short-chain dehydrogenase compare
PP_0393 -1.1 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1322 -1.1 -2.4 putative Lipoprotein compare
PP_1111 -1.1 -4.6 putative Synthetase compare
PP_4964 -1.1 -1.4 D-erythrose 4-phosphate dehydrogenase compare
PP_5350 -1.1 -4.1 Transcriptional regulator, RpiR family compare
PP_1022 -1.0 -3.7 glucose 6-phosphate-1-dehydrogenase compare
PP_0888 -1.0 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_0630 -1.0 -1.4 DNA gyrase inhibitor YacG compare
PP_1656 -1.0 -6.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_5227 -1.0 -5.0 diaminopimelate decarboxylase compare
PP_2307 -0.9 -1.8 conserved protein of unknown function compare
PP_1426 -0.9 -7.0 L-aspartate oxidase compare
PP_3637 -0.9 -1.5 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5048 -0.8 -4.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4199 -0.8 -1.1 putative Lipoprotein compare
PP_4004 -0.8 -1.8 DNA translocase FtsK compare
PP_1439 -0.8 -2.0 conserved exported protein of unknown function compare
PP_1829 -0.8 -2.7 Hydrolase, alpha/beta fold family compare
PP_2389 -0.8 -3.1 conserved protein of unknown function compare
PP_1761 -0.8 -5.9 diguanylate cyclase with phosphodiesterase domain compare
PP_0401 -0.8 -1.1 Ribosomal RNA small subunit methyltransferase A compare
PP_3519 -0.7 -1.1 putative Lipoprotein compare
PP_2847 -0.7 -1.5 Urease accessory protein UreJ compare
PP_5095 -0.7 -1.0 pyrroline-5-carboxylate reductase compare
PP_4213 -0.7 -2.6 putative dipeptidase compare
PP_5035 -0.7 -4.0 Histidine utilization repressor compare
PP_2960 -0.7 -3.5 transcriptional regulator, AraC family compare
PP_4722 -0.7 -3.4 Transcription elongation factor GreA compare
PP_1366 -0.7 -0.6 Transcriptional regulator MvaT, P16 subunit compare
PP_2322 -0.7 -4.9 Major outer membrane lipoprotein compare
PP_4880 -0.7 -3.5 exoribonuclease R compare
PP_4358 -0.7 -4.0 flagellar synthesis, switching and energizing component compare
PP_1468 -0.7 -1.8 Tyrosine recombinase XerD compare
PP_5322 -0.7 -3.6 putative metal ion transporter compare
PP_5055 -0.7 -2.1 Sulfurtransferase compare
PP_5047 -0.7 -3.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_3662 -0.7 -4.3 conserved protein of unknown function compare
PP_5331 -0.6 -1.7 Long-chain acyl-CoA thioester hydrolase compare
PP_2018 -0.6 -2.2 adhesin-associated BNR repeat protein (from data) compare
PP_0766 -0.6 -5.3 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_1215 -0.6 -0.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4363 -0.6 -4.4 Sensor histidine kinase/response regulator compare
PP_4701 -0.6 -0.9 glucose-6-phosphate isomerase compare
PP_1739 -0.6 -2.0 conserved membrane protein of unknown function compare
PP_2302 -0.6 -2.2 DNA-binding, ATP-dependent protease compare
PP_4804 -0.6 -1.5 RlpA-like lipoprotein compare
PP_4204 -0.6 -3.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1214 -0.6 -1.6 putative transcriptional regulatory protein compare
PP_0834 -0.6 -1.3 Sec translocation complex subunit YajC compare
PP_4793 -0.6 -0.7 conserved protein of unknown function compare
PP_4693 -0.6 -1.6 RNA polymerase-binding transcription factor DksA compare
PP_2615 -0.6 -2.0 hemolysin-coregulated protein compare
PP_2118 -0.6 -2.1 conserved protein of unknown function compare
PP_2568 -0.6 -1.1 Ring-cleaving dioxygenase compare
PP_4313 -0.6 -2.4 putative peptidylprolyl isomerase compare
PP_t13 -0.6 -1.8 tRNA-Lys compare
PP_1124 -0.6 -2.3 conserved membrane protein of unknown function compare
PP_2152 -0.6 -1.7 glycerophosphoryl diester phosphodiesterase compare
PP_3243 -0.6 -1.6 Acetyltransferase, GNAT family compare
PP_5075 -0.6 -4.3 glutamate synthase (NADPH) beta subunit compare
PP_4159 -0.6 -1.7 Potassium-transporting ATPase C chain compare
PP_5317 -0.6 -1.8 Probable chorismate pyruvate-lyase compare
PP_1233 -0.6 -1.9 sulfurtransferase compare
PP_2402 -0.6 -1.0 putative Sensor histidine kinase compare
PP_2203 -0.6 -1.2 conserved protein of unknown function compare
PP_1304 -0.6 -3.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4236 -0.5 -2.8 putative Thiol:disulfide interchange protein dsbE compare
PP_1679 -0.5 -2.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4368 -0.5 -3.0 flagellar motor switch protein compare
PP_4984 -0.5 -3.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1734 -0.5 -0.7 Probable septum site-determining protein MinC compare
PP_1589 -0.5 -3.6 uridylyltransferase compare
PP_1303 -0.5 -3.0 Sulfate adenylyltransferase subunit 2 compare
PP_4285 -0.5 -2.7 5-hydroxyisourate hydrolase compare
PP_5441 -0.5 -2.0 protein of unknown function compare
PP_0765 -0.5 -4.3 putative adhesin (DUF1302) (from data) compare
PP_4109 -0.5 -1.5 conserved protein of unknown function compare
PP_3929 -0.5 -2.6 conserved protein of unknown function compare
PP_2168 -0.5 -3.3 Transaldolase compare
PP_0040 -0.5 -1.7 hypothetical protein compare
PP_0978 -0.5 -1.4 conserved protein of unknown function compare
PP_2745 -0.5 -2.3 Universal stress protein family compare
PP_5295 -0.5 -1.1 conserved protein of unknown function compare
PP_3411 -0.5 -1.1 conserved protein of unknown function compare
PP_0410 -0.5 -2.9 DNA-binding response regulator UhpA compare
PP_0694 -0.5 -2.4 conserved protein of unknown function compare
PP_4008 -0.5 -2.8 ATP-dependent serine protease compare
PP_5216 -0.5 -1.7 exopolyphosphatase compare
PP_5500 -0.5 -1.3 protein of unknown function compare
PP_4988 -0.5 -2.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1217 -0.5 -1.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3241 -0.5 -1.2 conserved exported protein of unknown function compare
PP_1346 -0.5 -1.7 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_5183 -0.5 -2.7 glutamylpolyamine synthetase compare
PP_5256 -0.5 -2.5 Cyclic nucleotide-binding protein compare
PP_5076 -0.5 -4.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_5279 -0.5 -1.3 conserved protein of unknown function compare
PP_4369 -0.5 -3.5 Flagellar M-ring protein compare
PP_0122 -0.5 -1.6 conserved exported protein of unknown function compare
PP_5104 -0.5 -3.7 thiazole synthase compare
PP_2868 -0.5 -2.3 Transcriptional regulator, Cro/CI family compare
PP_0195 -0.5 -0.9 conserved protein of unknown function compare
PP_4392 -0.5 -3.3 chemotaxis protein methyltransferase compare
PP_1677 -0.5 -2.2 Adenosyl-cobyric acid synthase compare
PP_3684 -0.5 -2.5 conserved protein of unknown function compare
PP_1211 -0.5 -1.9 conserved protein of unknown function compare
PP_3409 -0.5 -1.5 putative Cobalamin biosynthesis protein cobE compare
PP_1503 -0.5 -1.9 conserved protein of unknown function compare
PP_4475 -0.5 -2.7 succinylglutamate desuccinylase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source 4-Aminobutyric acid across organisms