Experiment set28IT014 for Pseudomonas putida KT2440

Compare to:

Nicotinic Acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1986 -5.2 -5.1 3-isopropylmalate dehydratase small subunit compare
PP_3511 -4.4 -12.7 Branched-chain-amino-acid aminotransferase compare
PP_0691 -4.3 -8.2 Glutamate 5-kinase compare
PP_0290 -4.3 -9.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1079 -4.2 -9.5 Ornithine carbamoyltransferase compare
PP_0082 -4.1 -7.3 tryptophan synthase alpha chain compare
PP_4909 -4.1 -12.7 phosphoserine phosphatase compare
PP_5075 -4.0 -17.2 glutamate synthase (NADPH) beta subunit compare
PP_5076 -4.0 -22.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_4723 -3.7 -23.2 Carbamoyl-phosphate synthase large chain compare
PP_5014 -3.7 -5.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_1988 -3.7 -11.2 3-isopropylmalate dehydrogenase compare
PP_4679 -3.6 -10.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1985 -3.5 -6.9 3-isopropylmalate dehydratase large subunit compare
PP_0184 -3.5 -9.2 Argininosuccinate lyase compare
PP_0966 -3.4 -12.9 Histidinol dehydrogenase compare
PP_1995 -3.4 -12.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0083 -3.4 -7.5 tryptophan synthase beta chain compare
PP_4058 -3.4 -16.2 1,4-alpha-glucan branching enzyme compare
PP_4680 -3.3 -18.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5155 -3.3 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4724 -3.3 -16.4 Carbamoyl-phosphate synthase small chain compare
PP_0417 -3.3 -19.1 Anthranilate synthase component 1 compare
PP_4678 -3.3 -16.9 Ketol-acid reductoisomerase compare
PP_0967 -3.3 -14.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0421 -3.1 -8.8 Anthranilate phosphoribosyltransferase compare
PP_0420 -3.1 -13.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0422 -3.1 -8.6 Indole-3-glycerol phosphate synthase compare
PP_5185 -3.0 -9.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1088 -3.0 -12.8 Argininosuccinate synthase compare
PP_5048 -3.0 -8.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4890 -2.9 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_5015 -2.9 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0965 -2.9 -10.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5098 -2.7 -9.7 methionine biosynthesis protein MetW compare
PP_5289 -2.6 -3.8 Acetylglutamate kinase compare
PP_0289 -2.6 -8.6 Imidazoleglycerol-phosphate dehydratase compare
PP_2001 -2.5 -12.1 O-succinylhomoserine sulfhydrylase compare
PP_5097 -2.5 -14.2 homoserine O-acetyltransferase compare
PP_0292 -2.5 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2371 -2.4 -6.5 Sulphite reductase hemoprotein, beta subunit compare
PP_4999 -2.4 -3.2 dihydroorotase-like protein compare
PP_1025 -2.4 -10.3 2-isopropylmalate synthase compare
PP_0291 -2.4 -4.0 conserved protein of unknown function compare
PP_0339 -2.4 -6.6 Pyruvate dehydrogenase E1 component compare
PP_5128 -2.3 -8.8 Dihydroxy-acid dehydratase compare
PP_5047 -2.2 -7.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_2328 -2.0 -7.5 Phosphoadenosine phosphosulfate reductase compare
PP_4799 -2.0 -2.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2327 -1.9 -9.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2168 -1.9 -9.1 Transaldolase compare
PP_5095 -1.8 -2.0 pyrroline-5-carboxylate reductase compare
PP_0735 -1.8 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_4364 -1.7 -5.9 putative Anti-sigma F factor antagonist compare
PP_3828 -1.7 -8.3 Molybdate-binding periplasmic protein compare
PP_5114 -1.7 -2.7 putative adenine methyltransferase compare
PP_1294 -1.7 -4.9 molybdopterin synthase large subunit compare
PP_0293 -1.7 -1.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3945 -1.6 -11.4 2,5-dihydroxypyridine 5,6-dioxygenase compare
PP_3999 -1.6 -6.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3941 -1.6 -6.6 maleamate amidohydrolase compare
PP_1215 -1.6 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_1111 -1.5 -5.4 putative Synthetase compare
PP_3829 -1.5 -4.3 Molybdenum transport system permease protein ModB compare
PP_3944 -1.5 -7.7 6-hydroxynicotinate 3-monooxygenase compare
PP_1110 -1.5 -3.5 serine acetyltransferase compare
PP_2370 -1.4 -3.1 conserved protein of unknown function compare
PP_0625 -1.4 -9.1 Chaperone protein ClpB compare
PP_5322 -1.4 -6.6 putative metal ion transporter compare
PP_1589 -1.4 -8.2 uridylyltransferase compare
PP_5303 -1.4 -4.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1912 -1.4 -5.2 Phosphate acyltransferase compare
PP_1109 -1.4 -9.9 Transcriptional regulator, GntR family compare
PP_0127 -1.4 -8.6 Thiol:disulfide interchange protein compare
PP_2390 -1.3 -7.9 Transcriptional regulator, LysR family compare
PP_1568 -1.3 -2.0 conserved protein of unknown function compare
PP_3947 -1.3 -6.5 nicotinate dehydrogenase subunit A compare
PP_2414 -1.3 -1.9 conserved exported protein of unknown function compare
PP_3943 -1.3 -6.6 N-formylmaleamate deformylase compare
PP_2388 -1.3 -3.5 Transporter, LysE family compare
PP_2123 -1.3 -7.3 molybdenum::molybdopterin ligase compare
PP_3948 -1.3 -10.1 nicotinate dehydrogenase subunit B (EC 1.17.2.1) (from data) compare
PP_3484 -1.2 -6.4 Response regulator receiver protein compare
PP_0164 -1.2 -7.7 conserved protein of unknown function compare
PP_1216 -1.2 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1233 -1.1 -4.3 sulfurtransferase compare
PP_0643 -1.1 -3.4 protein of unknown function compare
PP_5227 -1.1 -5.4 diaminopimelate decarboxylase compare
PP_1293 -1.1 -1.7 molybdopterin synthase small subunit compare
PP_3830 -1.1 -7.7 Molybdenum import ATP-binding protein ModC compare
PP_4696 -1.1 -4.7 Nitrogen regulation protein NR(I) compare
PP_3942 -1.1 -4.6 maleate isomerase compare
PP_0914 -1.0 -7.3 GGDEF domain protein compare
PP_4964 -1.0 -1.5 D-erythrose 4-phosphate dehydrogenase compare
PP_3378 -0.9 -1.5 putative 2-ketogluconokinase compare
PP_1292 -0.9 -4.0 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_5295 -0.9 -1.6 conserved protein of unknown function compare
PP_0276 -0.9 -1.4 Transcriptional regulator, Cro/CI family compare
PP_4320 -0.9 -4.1 cytochrome c-type biogenesis protein compare
PP_4271 -0.8 -0.9 conserved protein of unknown function compare
PP_4789 -0.8 -3.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4910 -0.8 -1.5 conserved protein of unknown function compare
PP_4296 -0.8 -2.0 conserved exported protein of unknown function compare
PP_2088 -0.8 -2.5 RNA polymerase sigma factor SigX compare
PP_4363 -0.8 -6.2 Sensor histidine kinase/response regulator compare
PP_0719 -0.8 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2000 -0.8 -1.1 amidophosphoribosyl transferase compare
PP_3726 -0.8 -1.6 Enoyl-CoA hydratase/isomerase family protein compare
PP_4879 -0.8 -2.4 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_5233 -0.8 -5.0 ammonium transporter AmtB compare
PP_2136 -0.8 -2.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4726 -0.8 -2.2 Chaperone protein DnaJ compare
PP_2307 -0.8 -2.1 conserved protein of unknown function compare
PP_4231 -0.8 -4.1 putative Xanthine dehydrogenase accessory factor compare
PP_3505 -0.8 -2.2 conserved protein of unknown function compare
PP_1493 -0.8 -2.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2302 -0.7 -2.5 DNA-binding, ATP-dependent protease compare
PP_4943 -0.7 -1.7 putative Glycosyl transferase compare
PP_1439 -0.7 -1.9 conserved exported protein of unknown function compare
PP_4159 -0.7 -2.1 Potassium-transporting ATPase C chain compare
PP_1702 -0.7 -1.8 Recombination-associated protein RdgC compare
PP_5500 -0.7 -2.6 protein of unknown function compare
PP_0833 -0.7 -1.5 queuine tRNA-ribosyltransferase compare
PP_3508 -0.7 -2.6 Protein CobW compare
PP_3637 -0.7 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4814 -0.7 -1.6 ATP-dependent protease La domain protein compare
PP_4695 -0.7 -5.5 Sensory box histidine kinase compare
PP_2044 -0.7 -1.6 conserved inner membrane protein of unknown function compare
PP_1428 -0.7 -0.4 Sigma factor AlgU negative regulatory protein compare
PP_0401 -0.7 -1.0 Ribosomal RNA small subunit methyltransferase A compare
PP_1022 -0.7 -2.7 glucose 6-phosphate-1-dehydrogenase compare
PP_3940 -0.7 -3.8 Putative metabolite transport protein NicT compare
PP_4880 -0.7 -3.5 exoribonuclease R compare
PP_5350 -0.7 -3.4 Transcriptional regulator, RpiR family compare
PP_2070 -0.7 -1.1 Transcriptional regulator, AraC family compare
PP_1468 -0.7 -1.8 Tyrosine recombinase XerD compare
PP_3241 -0.7 -1.5 conserved exported protein of unknown function compare
PP_4338 -0.6 -4.4 Chemotaxis histidine kinase CheA compare
PP_2978 -0.6 -2.3 conserved protein of unknown function compare
PP_5000 -0.6 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_1381 -0.6 -0.9 4-carboxymuconolactone decarboxylase compare
PP_5232 -0.6 -1.5 conserved protein of unknown function compare
PP_5508 -0.6 -1.0 conserved protein of unknown function compare
PP_5028 -0.6 -2.2 proline iminopeptidase compare
PP_2499 -0.6 -1.3 conserved protein of unknown function compare
PP_4099 -0.6 -5.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5230 -0.6 -1.9 Tyrosine recombinase XerC compare
PP_3205 -0.6 -2.1 Fumarylacetoacetate hydrolase family protein compare
PP_1788 -0.6 -2.3 conserved protein of unknown function compare
PP_0566 -0.6 -1.2 translation-related factor compare
PP_5644 -0.6 -1.1 conserved membrane protein of unknown function compare
PP_1553 -0.6 -2.1 conserved protein of unknown function compare
PP_2029 -0.6 -1.5 von Willebrand factor type A domain protein compare
PP_5652 -0.6 -1.7 conserved protein of unknown function, phage origin compare
PP_1656 -0.6 -4.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_3892 -0.6 -1.4 conserved protein of unknown function compare
PP_2793 -0.6 -1.5 Acyl-CoA dehydrogenase family protein compare
PP_4593 -0.6 -0.9 conserved protein of unknown function compare
PP_1366 -0.6 -0.6 Transcriptional regulator MvaT, P16 subunit compare
PP_4739 -0.6 -1.6 conserved protein of unknown function compare
PP_5456 -0.6 -1.0 conserved protein of unknown function compare
PP_2765 -0.6 -1.0 putative Sulfonate monooxygenase MsuD compare
PP_1938 -0.6 -1.9 conserved protein of unknown function compare
PP_t12 -0.6 -0.7 tRNA-Thr compare
PP_4891 -0.5 -2.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3715 -0.5 -2.0 Muconate cycloisomerase 1 compare
PP_2160 -0.5 -2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4238 -0.5 -1.5 conserved protein of unknown function compare
PP_0065 -0.5 -1.7 NAD-binding component of TrK potassium transporter compare
PP_1326 -0.5 -1.6 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0949 -0.5 -2.6 putative ATP-binding protein UPF0042 compare
PP_1650 -0.5 -4.4 Sensor protein GacS compare
PP_1344 -0.5 -1.4 conserved protein of unknown function compare
PP_4162 -0.5 -1.7 conserved membrane protein of unknown function compare
PP_4829 -0.5 -1.6 putative precorrin-3B synthase compare
PP_3036 -0.5 -2.3 conserved protein of unknown function compare
PP_3590 -0.5 -2.8 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4340 -0.5 -1.8 response regulator for chemotactic signal transduction compare
PP_0352 -0.5 -1.8 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1734 -0.5 -0.7 Probable septum site-determining protein MinC compare
PP_4213 -0.5 -1.9 putative dipeptidase compare
PP_3682 -0.5 -2.3 conserved protein of unknown function compare
PP_0122 -0.5 -1.4 conserved exported protein of unknown function compare
PP_3198 -0.5 -1.7 Ferredoxin, 2Fe-2S compare
PP_4471 -0.5 -1.1 Magnesium transporter compare
PP_3926 -0.5 -1.2 short-chain dehydrogenase compare
PP_3522 -0.5 -1.8 conserved protein of unknown function compare
PP_2773 -0.5 -1.2 conserved protein of unknown function compare
PP_5367 -0.5 -2.9 Transketolase domain protein compare
PP_5525 -0.5 -1.7 conserved exported protein of unknown function compare
PP_4133 -0.5 -1.1 Transcriptional regulator-related protein compare
PP_5582 -0.5 -1.1 conserved protein of unknown function compare
PP_1207 -0.5 -2.1 conserved protein of unknown function compare
PP_5674 -0.5 -1.5 conserved protein of unknown function compare
PP_2784 -0.5 -1.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5017 -0.5 -0.7 Sec-independent protein translocase protein TatB compare
PP_5093 -0.5 -0.6 twitching motility protein compare
PP_3244 -0.5 -2.4 Magnesium transporter, MgtC family compare
PP_2922 -0.5 -1.7 Urea amidolyase-related protein compare
PP_1783 -0.4 -0.5 dTDP-glucose pyrophosphorylase compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source Nicotinic Acid in Pseudomonas putida KT2440

For nitrogen source Nicotinic Acid across organisms