Experiment set28IT010 for Pseudomonas putida KT2440

Compare to:

Betaine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1988 -5.8 -11.1 3-isopropylmalate dehydrogenase compare
PP_0293 -5.7 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0967 -5.1 -14.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5289 -5.0 -6.8 Acetylglutamate kinase compare
PP_0082 -5.0 -4.8 tryptophan synthase alpha chain compare
PP_4723 -4.9 -22.5 Carbamoyl-phosphate synthase large chain compare
PP_4724 -4.9 -10.9 Carbamoyl-phosphate synthase small chain compare
PP_1995 -4.9 -11.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5014 -4.8 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_5076 -4.8 -22.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_0083 -4.7 -4.6 tryptophan synthase beta chain compare
PP_0184 -4.7 -8.4 Argininosuccinate lyase compare
PP_3511 -4.6 -12.6 Branched-chain-amino-acid aminotransferase compare
PP_0290 -4.6 -9.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5075 -4.5 -16.6 glutamate synthase (NADPH) beta subunit compare
PP_5185 -4.5 -9.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4678 -4.4 -18.5 Ketol-acid reductoisomerase compare
PP_1088 -4.3 -15.8 Argininosuccinate synthase compare
PP_2370 -4.2 -4.1 conserved protein of unknown function compare
PP_0289 -4.2 -11.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0420 -4.1 -15.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0966 -4.1 -13.4 Histidinol dehydrogenase compare
PP_4890 -4.0 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_0313 -4.0 -5.5 putative electron transfer flavoprotein beta subunit compare
PP_5097 -4.0 -15.6 homoserine O-acetyltransferase compare
PP_4680 -4.0 -16.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1985 -4.0 -6.8 3-isopropylmalate dehydratase large subunit compare
PP_0422 -3.9 -8.1 Indole-3-glycerol phosphate synthase compare
PP_4999 -3.9 -3.7 dihydroorotase-like protein compare
PP_0417 -3.9 -19.1 Anthranilate synthase component 1 compare
PP_4058 -3.8 -16.2 1,4-alpha-glucan branching enzyme compare
PP_4679 -3.6 -8.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -3.6 -4.8 3-isopropylmalate dehydratase small subunit compare
PP_1079 -3.5 -6.4 Ornithine carbamoyltransferase compare
PP_0965 -3.4 -10.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0691 -3.4 -8.3 Glutamate 5-kinase compare
PP_5098 -3.4 -9.9 methionine biosynthesis protein MetW compare
PP_5048 -3.3 -10.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0421 -3.3 -7.2 Anthranilate phosphoribosyltransferase compare
PP_2328 -3.2 -8.2 Phosphoadenosine phosphosulfate reductase compare
PP_2001 -3.2 -12.3 O-succinylhomoserine sulfhydrylase compare
PP_5128 -3.2 -8.4 Dihydroxy-acid dehydratase compare
PP_5015 -3.1 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0324 -3.0 -10.9 sarcosine oxidase subunit delta conserved
PP_0292 -2.9 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0339 -2.9 -5.9 Pyruvate dehydrogenase E1 component compare
PP_1025 -2.9 -10.1 2-isopropylmalate synthase compare
PP_3999 -2.8 -5.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2371 -2.8 -6.8 Sulphite reductase hemoprotein, beta subunit compare
PP_0325 -2.7 -17.5 sarcosine oxidase subunit alpha conserved
PP_2327 -2.7 -12.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0323 -2.6 -11.3 sarcosine oxidase subunit beta compare
PP_0326 -2.6 -4.2 sarcosine oxidase subunit gamma compare
PP_1654 -2.6 -3.9 cysteine synthase B compare
PP_4098 -2.5 -2.9 UvrABC system protein C compare
PP_1912 -2.5 -6.9 Phosphate acyltransferase compare
PP_0787 -2.4 -6.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0308 -2.4 -11.9 putative dipeptidase compare
PP_0322 -2.3 -11.0 serine hydroxymethyltransferase compare
PP_5047 -2.2 -5.5 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0311 -2.2 -9.3 putative dimethylglycine dehydrogenase subunit compare
PP_4799 -2.2 -1.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2414 -2.2 -4.0 conserved exported protein of unknown function compare
PP_1616 -2.2 -10.7 formaldehyde dehydrogenase, glutathione-dependent conserved
PP_2168 -2.1 -9.3 Transaldolase compare
PP_0291 -2.0 -2.9 conserved protein of unknown function compare
PP_4364 -2.0 -5.6 putative Anti-sigma F factor antagonist compare
PP_5348 -2.0 -9.2 Transcriptional regulator, LysR family compare
PP_5346 -2.0 -10.0 pyruvate carboxylase subunit B compare
PP_0310 -2.0 -12.8 putative dimethylglycine dehydrogenase subunit compare
PP_1615 -1.9 -8.9 Transcriptional regulator, LysR family compare
PP_1589 -1.9 -9.9 uridylyltransferase compare
PP_5347 -1.9 -11.3 pyruvate carboxylase subunit A compare
PP_0309 -1.9 -11.7 conserved protein of unknown function compare
PP_0735 -1.9 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_0127 -1.8 -8.6 Thiol:disulfide interchange protein compare
PP_4993 -1.7 -4.5 Glutathione synthetase compare
PP_1022 -1.7 -5.4 glucose 6-phosphate-1-dehydrogenase compare
PP_0312 -1.7 -6.1 electron transfer flavoprotein, alpha subunit compare
PP_4532 -1.6 -2.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2390 -1.6 -8.6 Transcriptional regulator, LysR family compare
PP_2000 -1.6 -1.8 amidophosphoribosyl transferase compare
PP_1231 -1.5 -5.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0164 -1.5 -8.0 conserved protein of unknown function compare
PP_3484 -1.5 -5.0 Response regulator receiver protein compare
PP_3946 -1.5 -1.7 HTH-type transcriptional repressor NicR compare
PP_0846 -1.5 -2.3 DnaK-like molecular chaperone specific for IscU compare
PP_1656 -1.4 -8.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_4917 -1.4 -2.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5303 -1.4 -4.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2388 -1.3 -5.5 Transporter, LysE family compare
PP_4910 -1.2 -1.9 conserved protein of unknown function compare
PP_5322 -1.2 -6.7 putative metal ion transporter compare
PP_0315 -1.2 -7.9 putative glycine-betaine dioxygenase subunit conserved
PP_4561 -1.2 -1.4 stress response protein compare
PP_5350 -1.2 -4.7 Transcriptional regulator, RpiR family compare
PP_0393 -1.1 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1683 -1.1 -3.7 Transcriptional regulator, MarR family compare
PP_1110 -1.1 -3.2 serine acetyltransferase compare
PP_1217 -1.1 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4133 -1.0 -2.8 Transcriptional regulator-related protein compare
PP_3926 -1.0 -1.6 short-chain dehydrogenase compare
PP_4829 -1.0 -3.0 putative precorrin-3B synthase compare
PP_4804 -1.0 -2.1 RlpA-like lipoprotein compare
PP_4880 -1.0 -4.5 exoribonuclease R compare
PP_4159 -1.0 -2.0 Potassium-transporting ATPase C chain compare
PP_1468 -0.9 -2.4 Tyrosine recombinase XerD compare
PP_4136 -0.9 -1.0 Transcriptional regulator, LuxR family compare
PP_0316 -0.9 -4.4 putative glycine-betaine dioxygenase subunit conserved
PP_4874 -0.9 -0.8 50S ribosomal protein L9 compare
PP_5095 -0.9 -1.5 pyrroline-5-carboxylate reductase compare
PP_0362 -0.9 -6.6 Biotin synthase compare
PP_4895 -0.9 -2.4 tRNA dimethylallyltransferase compare
PP_0119 -0.9 -4.1 putative zinc uptake regulation protein ZUR compare
PP_1493 -0.9 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0120 -0.9 -5.3 putative zinc ABC transporter compare
PP_5486 -0.9 -2.1 conserved protein of unknown function compare
PP_5327 -0.8 -3.9 putative phosphate ABC transporter, permease subunit compare
PP_0117 -0.8 -5.2 Zn(2+) ABC transporter - permease subunit compare
PP_1109 -0.8 -6.6 Transcriptional regulator, GntR family compare
PP_1233 -0.8 -3.4 sulfurtransferase compare
PP_0888 -0.8 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_1346 -0.8 -3.2 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4126 -0.8 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_4481 -0.8 -4.3 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_0298 -0.8 -4.0 AraC-family transcriptional regulator conserved
PP_1237 -0.8 -1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0832 -0.8 -4.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_3417 -0.8 -3.4 D-gluconate transporter compare
PP_4789 -0.8 -4.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4902 -0.8 -2.6 Oligoribonuclease compare
PP_5227 -0.8 -4.2 diaminopimelate decarboxylase compare
PP_0801 -0.8 -1.0 conserved exported protein of unknown function compare
PP_4342 -0.7 -2.0 flagellar synthesis regulator, putative ATPase compare
PP_5441 -0.7 -1.9 protein of unknown function compare
PP_0833 -0.7 -1.8 queuine tRNA-ribosyltransferase compare
PP_1426 -0.7 -5.3 L-aspartate oxidase compare
PP_5233 -0.7 -4.3 ammonium transporter AmtB compare
PP_1111 -0.7 -2.8 putative Synthetase compare
PP_3505 -0.7 -1.7 conserved protein of unknown function compare
PP_5331 -0.7 -2.3 Long-chain acyl-CoA thioester hydrolase compare
PP_2341 -0.7 -1.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_5203 -0.7 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_0949 -0.7 -3.1 putative ATP-binding protein UPF0042 compare
PP_1546 -0.7 -3.3 conserved protein of unknown function compare
PP_2322 -0.7 -4.6 Major outer membrane lipoprotein compare
PP_3384 -0.7 -1.3 gluconate 2-dehydrogenase gamma subunit compare
PP_4700 -0.7 -2.2 pantothenate synthetase compare
PP_2378 -0.7 -0.9 Fe/S biogenesis protein NfuA compare
PP_5114 -0.6 -1.0 putative adenine methyltransferase compare
PP_1731 -0.6 -3.1 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_4480 -0.6 -4.2 arginine N-succinyltransferase, subunit alpha compare
PP_2547 -0.6 -2.4 Transcriptional regulator, LysR family compare
PP_4909 -0.6 -3.5 phosphoserine phosphatase compare
PP_4957 -0.6 -1.7 conserved protein of unknown function compare
PP_1872 -0.6 -4.4 glutamate-pyruvate aminotransferase compare
PP_5216 -0.6 -1.7 exopolyphosphatase compare
PP_4696 -0.6 -2.1 Nitrogen regulation protein NR(I) compare
PP_2929 -0.6 -4.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1528 -0.6 -1.4 conserved protein of unknown function compare
PP_2313 -0.6 -2.0 conserved membrane protein of unknown function compare
PP_1304 -0.6 -4.1 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0839 -0.6 -1.4 tRNA Cm32/Um32 methyltransferase compare
PP_4695 -0.6 -4.9 Sensory box histidine kinase compare
PP_1226 -0.6 -3.1 pre-queuosine 0 synthase compare
PP_5104 -0.6 -3.6 thiazole synthase compare
PP_4961 -0.6 -1.2 putative Lipoprotein compare
PP_4273 -0.6 -1.3 Transcriptional regulator, MerR family compare
PP_4984 -0.6 -4.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2429 -0.6 -1.5 putative Membrane protein compare
PP_2160 -0.6 -2.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_0959 -0.6 -1.5 phospholipid ABC transporter compare
PP_1999 -0.6 -1.2 membrane protein required for colicin V production compare
PP_4639 -0.6 -4.2 P-loop guanosine triphosphatase-dependent zinc chaperone compare
PP_t57 -0.6 -2.2 tRNA-Arg compare
PP_2136 -0.6 -2.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1553 -0.6 -1.3 conserved protein of unknown function compare
PP_2402 -0.6 -1.3 putative Sensor histidine kinase compare
PP_2756 -0.6 -1.0 conserved protein of unknown function compare
PP_1055 -0.6 -1.5 Type II secretion pathway protein GspN compare
PP_3519 -0.6 -0.9 putative Lipoprotein compare
PP_2337 -0.6 -1.5 aconitate isomerase compare
PP_1702 -0.6 -1.5 Recombination-associated protein RdgC compare
PP_1026 -0.6 -1.5 Peptidase, M23/M37 family compare
PP_1679 -0.6 -2.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5329 -0.5 -2.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4162 -0.5 -1.8 conserved membrane protein of unknown function compare
PP_3116 -0.5 -2.2 transcriptional repressor compare
PP_5241 -0.5 -1.7 DNA-binding response regulator, LuxR family compare
PP_2922 -0.5 -2.1 Urea amidolyase-related protein compare
PP_1368 -0.5 -2.9 putative membrane protein containing a glycosyltransferase domain compare
PP_4504 -0.5 -1.7 conserved exported protein of unknown function compare
PP_2568 -0.5 -1.0 Ring-cleaving dioxygenase compare
PP_3506 -0.5 -2.2 Magnesium chelatase, subunit ChII compare
PP_3580 -0.5 -1.5 conserved protein of unknown function compare
PP_5652 -0.5 -1.5 conserved protein of unknown function, phage origin compare
PP_2389 -0.5 -2.0 conserved protein of unknown function compare
PP_2031 -0.5 -1.5 conserved protein of unknown function compare
PP_3963 -0.5 -2.8 conserved protein of unknown function compare
PP_2307 -0.5 -1.6 conserved protein of unknown function compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source Betaine in Pseudomonas putida KT2440

For nitrogen source Betaine across organisms