Experiment set28IT009 for Pseudomonas putida KT2440

Compare to:

Betaine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0422 -6.3 -7.5 Indole-3-glycerol phosphate synthase compare
PP_0293 -5.4 -3.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -5.0 -10.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4723 -4.9 -22.2 Carbamoyl-phosphate synthase large chain compare
PP_4680 -4.8 -17.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -4.8 -11.1 3-isopropylmalate dehydrogenase compare
PP_4724 -4.8 -10.1 Carbamoyl-phosphate synthase small chain compare
PP_5075 -4.7 -14.2 glutamate synthase (NADPH) beta subunit compare
PP_0292 -4.7 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0184 -4.6 -7.7 Argininosuccinate lyase compare
PP_4890 -4.6 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_5076 -4.6 -21.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_4999 -4.5 -3.1 dihydroorotase-like protein compare
PP_1079 -4.4 -9.4 Ornithine carbamoyltransferase compare
PP_4678 -4.4 -16.5 Ketol-acid reductoisomerase compare
PP_0967 -4.4 -12.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1088 -4.3 -14.3 Argininosuccinate synthase compare
PP_5185 -4.2 -9.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0082 -4.1 -6.3 tryptophan synthase alpha chain compare
PP_3511 -4.1 -10.8 Branched-chain-amino-acid aminotransferase compare
PP_0420 -4.1 -13.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0966 -4.1 -11.7 Histidinol dehydrogenase compare
PP_2371 -3.8 -6.4 Sulphite reductase hemoprotein, beta subunit compare
PP_5098 -3.8 -10.3 methionine biosynthesis protein MetW compare
PP_0083 -3.7 -6.2 tryptophan synthase beta chain compare
PP_1985 -3.7 -7.6 3-isopropylmalate dehydratase large subunit compare
PP_4058 -3.7 -15.3 1,4-alpha-glucan branching enzyme compare
PP_0417 -3.7 -18.7 Anthranilate synthase component 1 compare
PP_0289 -3.6 -9.0 Imidazoleglycerol-phosphate dehydratase compare
PP_5097 -3.6 -15.5 homoserine O-acetyltransferase compare
PP_1986 -3.5 -4.7 3-isopropylmalate dehydratase small subunit compare
PP_5048 -3.5 -7.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1995 -3.5 -7.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5128 -3.5 -12.0 Dihydroxy-acid dehydratase compare
PP_2001 -3.5 -11.2 O-succinylhomoserine sulfhydrylase compare
PP_0421 -3.4 -7.8 Anthranilate phosphoribosyltransferase compare
PP_0691 -3.4 -7.2 Glutamate 5-kinase compare
PP_4679 -3.3 -8.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1025 -3.2 -10.1 2-isopropylmalate synthase compare
PP_0965 -3.2 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2327 -3.1 -11.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5015 -3.1 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5014 -3.0 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0325 -2.9 -17.2 sarcosine oxidase subunit alpha conserved
PP_0326 -2.8 -7.0 sarcosine oxidase subunit gamma compare
PP_0339 -2.8 -5.2 Pyruvate dehydrogenase E1 component compare
PP_0291 -2.7 -2.7 conserved protein of unknown function compare
PP_0322 -2.7 -9.8 serine hydroxymethyltransferase compare
PP_5346 -2.6 -9.6 pyruvate carboxylase subunit B compare
PP_5289 -2.6 -6.0 Acetylglutamate kinase compare
PP_0324 -2.5 -10.4 sarcosine oxidase subunit delta conserved
PP_0323 -2.4 -11.7 sarcosine oxidase subunit beta compare
PP_2328 -2.3 -6.4 Phosphoadenosine phosphosulfate reductase compare
PP_0308 -2.3 -10.6 putative dipeptidase compare
PP_3999 -2.3 -5.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2414 -2.2 -2.3 conserved exported protein of unknown function compare
PP_0310 -2.2 -13.1 putative dimethylglycine dehydrogenase subunit compare
PP_0311 -2.1 -9.4 putative dimethylglycine dehydrogenase subunit compare
PP_1616 -2.1 -10.4 formaldehyde dehydrogenase, glutathione-dependent conserved
PP_4799 -2.0 -1.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1654 -2.0 -3.5 cysteine synthase B compare
PP_0787 -1.9 -6.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5047 -1.9 -5.0 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_2370 -1.9 -3.3 conserved protein of unknown function compare
PP_0309 -1.8 -8.4 conserved protein of unknown function compare
PP_5348 -1.8 -8.5 Transcriptional regulator, LysR family compare
PP_5303 -1.8 -5.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2168 -1.8 -7.2 Transaldolase compare
PP_4993 -1.8 -4.0 Glutathione synthetase compare
PP_1231 -1.8 -6.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1615 -1.7 -8.1 Transcriptional regulator, LysR family compare
PP_5347 -1.7 -9.3 pyruvate carboxylase subunit A compare
PP_1912 -1.7 -4.9 Phosphate acyltransferase compare
PP_2307 -1.7 -4.0 conserved protein of unknown function compare
PP_0312 -1.7 -6.6 electron transfer flavoprotein, alpha subunit compare
PP_2388 -1.6 -4.9 Transporter, LysE family compare
PP_1656 -1.6 -8.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_0313 -1.6 -2.5 putative electron transfer flavoprotein beta subunit compare
PP_4004 -1.5 -2.5 DNA translocase FtsK compare
PP_0127 -1.5 -6.8 Thiol:disulfide interchange protein compare
PP_1110 -1.5 -2.9 serine acetyltransferase compare
PP_1589 -1.5 -7.4 uridylyltransferase compare
PP_4364 -1.5 -3.1 putative Anti-sigma F factor antagonist compare
PP_2402 -1.5 -2.3 putative Sensor histidine kinase compare
PP_2378 -1.4 -1.3 Fe/S biogenesis protein NfuA compare
PP_1022 -1.3 -3.8 glucose 6-phosphate-1-dehydrogenase compare
PP_2390 -1.3 -6.0 Transcriptional regulator, LysR family compare
PP_5114 -1.2 -2.0 putative adenine methyltransferase compare
PP_4696 -1.2 -3.8 Nitrogen regulation protein NR(I) compare
PP_0735 -1.2 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_0315 -1.1 -7.0 putative glycine-betaine dioxygenase subunit conserved
PP_4136 -1.1 -1.3 Transcriptional regulator, LuxR family compare
PP_4199 -1.1 -1.2 putative Lipoprotein compare
PP_0298 -1.1 -5.6 AraC-family transcriptional regulator conserved
PP_4895 -1.1 -2.6 tRNA dimethylallyltransferase compare
PP_0316 -1.1 -5.1 putative glycine-betaine dioxygenase subunit conserved
PP_1702 -1.1 -2.3 Recombination-associated protein RdgC compare
PP_1109 -1.1 -7.6 Transcriptional regulator, GntR family compare
PP_2499 -1.1 -1.5 conserved protein of unknown function compare
PP_2336 -1.0 -3.2 aconitate hydratase 1 compare
PP_4481 -1.0 -4.8 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5445 -1.0 -2.3 conserved protein of unknown function compare
PP_0393 -1.0 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4902 -1.0 -2.9 Oligoribonuclease compare
PP_2475 -1.0 -3.3 Transcriptional regulator, TetR family compare
PP_0513 -1.0 -2.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4342 -1.0 -2.3 flagellar synthesis regulator, putative ATPase compare
PP_0401 -1.0 -1.1 Ribosomal RNA small subunit methyltransferase A compare
PP_4789 -0.9 -2.7 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0164 -0.9 -4.8 conserved protein of unknown function compare
PP_1217 -0.9 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0362 -0.9 -6.1 Biotin synthase compare
PP_1468 -0.9 -2.0 Tyrosine recombinase XerD compare
PP_3449 -0.9 -3.0 conserved exported protein of unknown function compare
PP_4722 -0.9 -3.3 Transcription elongation factor GreA compare
PP_4204 -0.9 -3.2 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5095 -0.9 -1.3 pyrroline-5-carboxylate reductase compare
PP_3052 -0.9 -1.3 conserved protein of unknown function compare
PP_4726 -0.8 -2.2 Chaperone protein DnaJ compare
PP_0119 -0.8 -2.3 putative zinc uptake regulation protein ZUR compare
PP_5748 -0.8 -1.4 cytochrome c heme lyase subunit compare
PP_3102 -0.8 -3.1 conserved protein of unknown function compare
PP_0833 -0.8 -2.3 queuine tRNA-ribosyltransferase compare
PP_5058 -0.8 -4.0 Carboxy-terminal-processing protease compare
PP_2000 -0.8 -1.1 amidophosphoribosyl transferase compare
PP_1294 -0.8 -2.6 molybdopterin synthase large subunit compare
PP_5350 -0.8 -2.6 Transcriptional regulator, RpiR family compare
PP_2088 -0.8 -2.9 RNA polymerase sigma factor SigX compare
PP_0719 -0.8 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0120 -0.8 -4.1 putative zinc ABC transporter compare
PP_1426 -0.7 -5.7 L-aspartate oxidase compare
PP_5110 -0.7 -1.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4480 -0.7 -4.6 arginine N-succinyltransferase, subunit alpha compare
PP_2181 -0.7 -2.6 Transcriptional regulator, Cro/CI family compare
PP_0846 -0.7 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_0040 -0.7 -2.1 hypothetical protein compare
PP_2847 -0.7 -1.7 Urease accessory protein UreJ compare
PP_4546 -0.7 -2.7 ATP-dependent helicase HrpA compare
PP_1036 -0.7 -3.3 membrane-bound lytic murein transglycosylase F compare
PP_5233 -0.7 -4.6 ammonium transporter AmtB compare
PP_2677 -0.7 -2.9 conserved exported protein of unknown function compare
PP_3484 -0.7 -3.4 Response regulator receiver protein compare
PP_2322 -0.7 -4.8 Major outer membrane lipoprotein compare
PP_1233 -0.7 -2.9 sulfurtransferase compare
PP_1994 -0.7 -1.2 tRNA pseudouridine (38-40)synthase compare
PP_5322 -0.7 -3.7 putative metal ion transporter compare
PP_2907 -0.7 -1.8 DNA-binding response regulator compare
PP_5329 -0.7 -2.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5055 -0.7 -2.5 Sulfurtransferase compare
PP_5227 -0.7 -4.3 diaminopimelate decarboxylase compare
PP_1366 -0.7 -0.8 Transcriptional regulator MvaT, P16 subunit compare
PP_0725 -0.7 -3.0 conserved hypothetical TPR repeat protein compare
PP_4268 -0.7 -0.9 nucleoid-associated broad specificity regulator compare
PP_4581 -0.7 -2.3 putative amidotransferase compare
PP_4909 -0.7 -4.2 phosphoserine phosphatase compare
PP_0003 -0.7 -2.7 16S RNA methyltransferase compare
PP_4517 -0.7 -2.0 conserved protein of unknown function compare
PP_0118 -0.7 -4.0 zinc import ATP-binding protein compare
PP_4379 -0.7 -2.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4917 -0.6 -1.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5054 -0.6 -1.1 glutaredoxin 3 compare
PP_3926 -0.6 -1.5 short-chain dehydrogenase compare
PP_0848 -0.6 -1.8 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4984 -0.6 -4.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1268 -0.6 -2.2 putative HtrA suppressor protein sohA compare
PP_5035 -0.6 -3.1 Histidine utilization repressor compare
PP_5704 -0.6 -2.8 conserved protein of unknown function compare
PP_5104 -0.6 -3.6 thiazole synthase compare
PP_1553 -0.6 -1.0 conserved protein of unknown function compare
PP_5393 -0.6 -0.9 putative metal-binding chaperone compare
PP_2631 -0.6 -1.4 putative cellulose biosynthesis, BcsF/YhjT compare
PP_3610 -0.6 -3.1 conserved protein of unknown function compare
PP_0117 -0.6 -3.8 Zn(2+) ABC transporter - permease subunit compare
PP_4804 -0.6 -1.4 RlpA-like lipoprotein compare
PP_1672 -0.6 -3.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1441 -0.6 -2.0 tRNA (cmo5U34)-methyltransferase compare
PP_0980 -0.6 -2.9 Probable cytosol aminopeptidase compare
PP_1326 -0.6 -1.8 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_5100 -0.6 -1.2 dITP/XTP pyrophosphatase compare
PP_4964 -0.6 -1.0 D-erythrose 4-phosphate dehydrogenase compare
PP_4639 -0.6 -4.1 P-loop guanosine triphosphatase-dependent zinc chaperone compare
PP_1770 -0.6 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5203 -0.6 -3.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_1699 -0.6 -2.9 2-pyrone-4,6-dicarboxylic acid hydrolase compare
PP_4695 -0.6 -4.3 Sensory box histidine kinase compare
PP_1020 -0.6 -1.2 putative glucose-6-phosphate 1-epimerase compare
PP_4880 -0.6 -2.7 exoribonuclease R compare
PP_4449 -0.6 -2.4 conserved protein of unknown function compare
PP_2858 -0.6 -1.5 conserved exported protein of unknown function compare
PP_3892 -0.6 -1.3 conserved protein of unknown function compare
PP_1617 -0.6 -2.4 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare
PP_5475 -0.6 -0.9 conserved protein of unknown function compare
PP_3916 -0.5 -0.9 conserved protein of unknown function compare
PP_0614 -0.5 -2.2 putative N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 1 compare
PP_2681 -0.5 -1.3 coenzyme PQQ synthesis protein D compare
PP_1303 -0.5 -3.1 Sulfate adenylyltransferase subunit 2 compare
PP_5533 -0.5 -1.0 conserved protein of unknown function compare
PP_3035 -0.5 -1.2 conserved protein of unknown function compare
PP_1111 -0.5 -2.1 putative Synthetase compare
PP_1348 -0.5 -2.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare


Specific Phenotypes

For 15 genes in this experiment

For nitrogen source Betaine in Pseudomonas putida KT2440

For nitrogen source Betaine across organisms