Experiment set28IT008 for Pseudomonas putida KT2440

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Carnitine Hydrochloride nitrogen source

Genes with specific phenotypes:

  gene name fitness t score description  
PP_0323 -4.1 -12.4 sarcosine oxidase subunit beta conserved
PP_0310 -3.7 -15.3 putative dimethylglycine dehydrogenase subunit conserved
PP_0326 -3.6 -7.7 sarcosine oxidase subunit gamma compare
PP_0324 -3.6 -12.7 sarcosine oxidase subunit delta conserved
PP_0312 -3.5 -10.3 electron transfer flavoprotein, alpha subunit conserved
PP_0303 -3.4 -5.6 dehydrocarnitine cleavage enzyme conserved
PP_0301 -3.4 -7.3 betainyl-CoA thiolase conserved
PP_0325 -3.3 -18.4 sarcosine oxidase subunit alpha conserved
PP_0298 -3.3 -9.5 AraC-family transcriptional regulator conserved
PP_0308 -3.3 -11.4 putative dipeptidase conserved
PP_0295 -3.2 -9.0 choline / betaine / carnitine ABC transporter - membrane subunit conserved
PP_0311 -3.1 -10.2 putative dimethylglycine dehydrogenase subunit conserved
PP_0309 -3.0 -13.4 conserved protein of unknown function conserved
PP_0315 -2.9 -13.2 putative glycine-betaine dioxygenase subunit conserved
PP_0302 -2.9 -13.2 L-carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) conserved
PP_0316 -2.9 -9.7 putative glycine-betaine dioxygenase subunit conserved
PP_0294 -2.8 -8.1 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) conserved
PP_0304 -2.8 -8.6 Carnitine uptake ABC transporter, periplasmic component conserved
PP_0322 -2.5 -10.0 serine hydroxymethyltransferase conserved
PP_0305 -2.4 -6.3 HTH-type transcriptional regulator CdhR conserved
PP_0902 -1.6 -8.6 integral membrane sensor signal transduction histidine kinase compare
PP_0901 -1.4 -5.7 DNA-binding response regulator compare
PP_0296 -1.4 -5.2 choline / betaine / carnitine ABC transporter - substrate binding protein conserved
PP_5719 +1.3 8.3 choline-responsive transcriptional repressor BetI compare


Specific phenotypes for nitrogen source Carnitine Hydrochloride across organisms