Experiment set28IT007 for Pseudomonas putida KT2440

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Carnitine Hydrochloride nitrogen source

Genes with specific phenotypes:

  gene name fitness t score description  
PP_0298 -3.6 -9.0 AraC-family transcriptional regulator conserved
PP_0312 -3.6 -10.6 electron transfer flavoprotein, alpha subunit conserved
PP_0325 -3.5 -18.3 sarcosine oxidase subunit alpha conserved
PP_0326 -3.5 -5.6 sarcosine oxidase subunit gamma compare
PP_0324 -3.4 -10.2 sarcosine oxidase subunit delta conserved
PP_0310 -3.3 -14.1 putative dimethylglycine dehydrogenase subunit conserved
PP_0315 -3.2 -12.9 putative glycine-betaine dioxygenase subunit conserved
PP_0311 -3.2 -9.6 putative dimethylglycine dehydrogenase subunit conserved
PP_0308 -3.1 -11.9 putative dipeptidase conserved
PP_0294 -3.1 -7.7 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) conserved
PP_0295 -3.1 -10.5 choline / betaine / carnitine ABC transporter - membrane subunit conserved
PP_0323 -3.1 -11.8 sarcosine oxidase subunit beta conserved
PP_0316 -3.1 -9.6 putative glycine-betaine dioxygenase subunit conserved
PP_0302 -2.9 -12.4 L-carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) conserved
PP_0304 -2.8 -5.8 Carnitine uptake ABC transporter, periplasmic component conserved
PP_0303 -2.8 -5.9 dehydrocarnitine cleavage enzyme conserved
PP_0322 -2.7 -9.2 serine hydroxymethyltransferase conserved
PP_0305 -2.6 -6.6 HTH-type transcriptional regulator CdhR conserved
PP_0301 -2.6 -6.9 betainyl-CoA thiolase conserved
PP_0309 -2.5 -12.3 conserved protein of unknown function conserved
PP_0296 -1.7 -5.8 choline / betaine / carnitine ABC transporter - substrate binding protein conserved
PP_5719 +1.0 6.4 choline-responsive transcriptional repressor BetI compare


Specific phenotypes for nitrogen source Carnitine Hydrochloride across organisms