Experiment set28IT007 for Pseudomonas putida KT2440

Compare to:

Carnitine Hydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0290 -4.7 -9.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4724 -4.6 -14.5 Carbamoyl-phosphate synthase small chain compare
PP_0082 -4.5 -6.2 tryptophan synthase alpha chain compare
PP_5075 -4.5 -16.1 glutamate synthase (NADPH) beta subunit compare
PP_1985 -4.2 -8.1 3-isopropylmalate dehydratase large subunit compare
PP_1589 -4.2 -12.5 uridylyltransferase compare
PP_1988 -4.2 -10.5 3-isopropylmalate dehydrogenase compare
PP_4058 -4.0 -15.3 1,4-alpha-glucan branching enzyme compare
PP_5048 -4.0 -8.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2168 -4.0 -13.3 Transaldolase compare
PP_5289 -3.9 -5.3 Acetylglutamate kinase compare
PP_4723 -3.9 -22.6 Carbamoyl-phosphate synthase large chain compare
PP_5047 -3.8 -8.7 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4999 -3.8 -3.7 dihydroorotase-like protein compare
PP_0083 -3.8 -7.3 tryptophan synthase beta chain compare
PP_5076 -3.8 -20.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_1079 -3.8 -9.0 Ornithine carbamoyltransferase compare
PP_4890 -3.7 -8.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_0691 -3.7 -6.9 Glutamate 5-kinase compare
PP_0313 -3.6 -3.8 putative electron transfer flavoprotein beta subunit compare
PP_0298 -3.6 -9.0 AraC-family transcriptional regulator conserved
PP_0293 -3.6 -3.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0422 -3.6 -8.9 Indole-3-glycerol phosphate synthase compare
PP_0312 -3.6 -10.6 electron transfer flavoprotein, alpha subunit conserved
PP_0967 -3.6 -11.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0325 -3.5 -18.3 sarcosine oxidase subunit alpha conserved
PP_0966 -3.5 -11.3 Histidinol dehydrogenase compare
PP_0292 -3.5 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0326 -3.5 -5.6 sarcosine oxidase subunit gamma compare
PP_1088 -3.4 -15.0 Argininosuccinate synthase compare
PP_3511 -3.4 -8.5 Branched-chain-amino-acid aminotransferase compare
PP_0324 -3.4 -10.2 sarcosine oxidase subunit delta conserved
PP_5098 -3.4 -10.1 methionine biosynthesis protein MetW compare
PP_0417 -3.4 -18.6 Anthranilate synthase component 1 compare
PP_0420 -3.4 -15.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4678 -3.4 -16.1 Ketol-acid reductoisomerase compare
PP_2001 -3.4 -10.8 O-succinylhomoserine sulfhydrylase compare
PP_5128 -3.3 -10.4 Dihydroxy-acid dehydratase compare
PP_0289 -3.3 -9.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0310 -3.3 -14.1 putative dimethylglycine dehydrogenase subunit conserved
PP_5097 -3.2 -14.4 homoserine O-acetyltransferase compare
PP_5441 -3.2 -4.2 protein of unknown function compare
PP_0315 -3.2 -12.9 putative glycine-betaine dioxygenase subunit conserved
PP_4680 -3.2 -15.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4679 -3.2 -8.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0311 -3.2 -9.6 putative dimethylglycine dehydrogenase subunit conserved
PP_0308 -3.1 -11.9 putative dipeptidase conserved
PP_0294 -3.1 -7.7 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) conserved
PP_0295 -3.1 -10.5 choline / betaine / carnitine ABC transporter - membrane subunit conserved
PP_1986 -3.1 -6.1 3-isopropylmalate dehydratase small subunit compare
PP_0421 -3.1 -7.5 Anthranilate phosphoribosyltransferase compare
PP_0323 -3.1 -11.8 sarcosine oxidase subunit beta conserved
PP_0316 -3.1 -9.6 putative glycine-betaine dioxygenase subunit conserved
PP_1995 -3.0 -8.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5015 -2.9 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0302 -2.9 -12.4 L-carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) conserved
PP_0965 -2.9 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -2.9 -6.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0304 -2.8 -5.8 Carnitine uptake ABC transporter, periplasmic component conserved
PP_0303 -2.8 -5.9 dehydrocarnitine cleavage enzyme conserved
PP_0322 -2.7 -9.2 serine hydroxymethyltransferase conserved
PP_0305 -2.6 -6.6 HTH-type transcriptional regulator CdhR conserved
PP_5014 -2.6 -4.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_0301 -2.6 -6.9 betainyl-CoA thiolase conserved
PP_0184 -2.5 -6.7 Argininosuccinate lyase compare
PP_2371 -2.5 -7.3 Sulphite reductase hemoprotein, beta subunit compare
PP_0309 -2.5 -12.3 conserved protein of unknown function conserved
PP_1109 -2.5 -14.7 Transcriptional regulator, GntR family compare
PP_5145 -2.5 -19.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2088 -2.5 -6.0 RNA polymerase sigma factor SigX compare
PP_2328 -2.5 -7.4 Phosphoadenosine phosphosulfate reductase compare
PP_4060 -2.4 -14.1 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0127 -2.2 -9.0 Thiol:disulfide interchange protein compare
PP_1110 -2.1 -5.6 serine acetyltransferase compare
PP_5095 -2.1 -2.6 pyrroline-5-carboxylate reductase compare
PP_4364 -2.1 -6.6 putative Anti-sigma F factor antagonist compare
PP_1111 -2.0 -5.7 putative Synthetase compare
PP_0164 -2.0 -8.9 conserved protein of unknown function compare
PP_4874 -1.9 -1.3 50S ribosomal protein L9 compare
PP_1025 -1.9 -7.7 2-isopropylmalate synthase compare
PP_1231 -1.9 -7.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1493 -1.8 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0406 -1.8 -6.7 Nucleotidyltransferase family protein compare
PP_4004 -1.8 -2.7 DNA translocase FtsK compare
PP_0948 -1.7 -2.5 Phosphocarrier protein HPr compare
PP_5227 -1.7 -7.8 diaminopimelate decarboxylase compare
PP_2433 -1.7 -3.9 conserved protein of unknown function compare
PP_1994 -1.7 -2.7 tRNA pseudouridine (38-40)synthase compare
PP_0296 -1.7 -5.8 choline / betaine / carnitine ABC transporter - substrate binding protein conserved
PP_4943 -1.7 -2.3 putative Glycosyl transferase compare
PP_3999 -1.6 -5.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3662 -1.6 -8.5 conserved protein of unknown function compare
PP_1224 -1.6 -7.5 periplasmic subunit of the TolQRA transport system compare
PP_2414 -1.6 -2.9 conserved exported protein of unknown function compare
PP_4799 -1.6 -1.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2327 -1.6 -10.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3821 -1.6 -9.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4480 -1.6 -9.1 arginine N-succinyltransferase, subunit alpha compare
PP_1216 -1.5 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4879 -1.5 -3.3 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_4940 -1.5 -7.7 Putative glycosyltransferase compare
PP_5322 -1.4 -7.9 putative metal ion transporter compare
PP_0719 -1.4 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5093 -1.4 -1.5 twitching motility protein compare
PP_5347 -1.4 -7.7 pyruvate carboxylase subunit A compare
PP_0901 -1.4 -7.2 DNA-binding response regulator compare
PP_2402 -1.4 -2.3 putative Sensor histidine kinase compare
PP_4910 -1.4 -1.8 conserved protein of unknown function compare
PP_2000 -1.3 -1.5 amidophosphoribosyl transferase compare
PP_2306 -1.3 -2.8 conserved exported protein of unknown function compare
PP_4909 -1.3 -5.3 phosphoserine phosphatase compare
PP_2370 -1.3 -2.4 conserved protein of unknown function compare
PP_0914 -1.3 -7.5 GGDEF domain protein compare
PP_1293 -1.3 -1.8 molybdopterin synthase small subunit compare
PP_1656 -1.2 -7.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_0902 -1.2 -7.5 integral membrane sensor signal transduction histidine kinase compare
PP_0787 -1.2 -3.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5571 -1.2 -1.7 conserved protein of unknown function compare
PP_4880 -1.2 -5.3 exoribonuclease R compare
PP_4804 -1.2 -2.0 RlpA-like lipoprotein compare
PP_4902 -1.1 -3.2 Oligoribonuclease compare
PP_0291 -1.1 -2.0 conserved protein of unknown function compare
PP_5017 -1.1 -1.4 Sec-independent protein translocase protein TatB compare
PP_2145 -1.1 -5.5 beta-N-acetylglucosaminidase compare
PP_4273 -1.1 -2.2 Transcriptional regulator, MerR family compare
PP_5233 -1.1 -5.5 ammonium transporter AmtB compare
PP_5230 -1.1 -2.9 Tyrosine recombinase XerC compare
PP_0339 -1.1 -4.6 Pyruvate dehydrogenase E1 component compare
PP_5241 -1.1 -2.9 DNA-binding response regulator, LuxR family compare
PP_5146 -1.0 -5.6 RNA pyrophosphohydrolase compare
PP_4895 -1.0 -2.5 tRNA dimethylallyltransferase compare
PP_4008 -1.0 -4.2 ATP-dependent serine protease compare
PP_5346 -1.0 -5.2 pyruvate carboxylase subunit B compare
PP_1824 -1.0 -1.6 Smr domain protein compare
PP_4722 -0.9 -4.0 Transcription elongation factor GreA compare
PP_5348 -0.9 -5.7 Transcriptional regulator, LysR family compare
PP_0949 -0.9 -4.0 putative ATP-binding protein UPF0042 compare
PP_2388 -0.9 -3.3 Transporter, LysE family compare
PP_3244 -0.9 -3.6 Magnesium transporter, MgtC family compare
PP_1999 -0.9 -2.0 membrane protein required for colicin V production compare
PP_0393 -0.9 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4696 -0.9 -3.7 Nitrogen regulation protein NR(I) compare
PP_1764 -0.9 -4.8 Phosphoglycolate phosphatase 2 compare
PP_0405 -0.9 -7.1 conserved protein of unknown function compare
PP_0401 -0.9 -1.1 Ribosomal RNA small subunit methyltransferase A compare
PP_4697 -0.9 -2.8 poly(A) polymerase compare
PP_2322 -0.9 -4.9 Major outer membrane lipoprotein compare
PP_1217 -0.9 -2.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4938 -0.9 -5.6 putative Glycosyl transferase compare
PP_3946 -0.9 -1.3 HTH-type transcriptional repressor NicR compare
PP_4531 -0.9 -3.1 conserved exported protein of unknown function compare
PP_4937 -0.9 -1.3 toluene tolerance protein compare
PP_5303 -0.9 -3.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1022 -0.9 -3.0 glucose 6-phosphate-1-dehydrogenase compare
PP_1233 -0.8 -2.9 sulfurtransferase compare
PP_4593 -0.8 -1.8 conserved protein of unknown function compare
PP_1912 -0.8 -4.2 Phosphate acyltransferase compare
PP_1326 -0.8 -2.0 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0345 -0.8 -2.4 putative Heptose kinase WapP compare
PP_5350 -0.8 -3.8 Transcriptional regulator, RpiR family compare
PP_0833 -0.8 -2.3 queuine tRNA-ribosyltransferase compare
PP_1654 -0.8 -2.1 cysteine synthase B compare
PP_4009 -0.8 -2.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_1779 -0.8 -3.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1468 -0.8 -1.6 Tyrosine recombinase XerD compare
PP_3411 -0.8 -1.5 conserved protein of unknown function compare
PP_0938 -0.8 -5.3 conserved protein of unknown function compare
PP_3121 -0.8 -2.9 transcriptional regulator, LysR family compare
PP_1366 -0.7 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_5456 -0.7 -1.3 conserved protein of unknown function compare
PP_2390 -0.7 -4.0 Transcriptional regulator, LysR family compare
PP_0556 -0.7 -2.8 Acetoin catabolism protein compare
PP_5110 -0.7 -2.1 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1702 -0.7 -1.8 Recombination-associated protein RdgC compare
PP_4936 -0.7 -3.8 O-antigen polymerase compare
PP_1008 -0.7 -1.6 RNA polymerase subunit sigma-24 compare
PP_0434 -0.7 -4.8 Anhydro-N-acetylmuramic acid kinase compare
PP_4814 -0.7 -2.6 ATP-dependent protease La domain protein compare
PP_5232 -0.7 -1.3 conserved protein of unknown function compare
PP_1346 -0.7 -2.8 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4829 -0.7 -2.1 putative precorrin-3B synthase compare
PP_1404 -0.7 -2.1 conserved protein of unknown function compare
PP_0063 -0.7 -2.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4782 -0.7 -2.7 Phosphomethylpyrimidine kinase compare
PP_1780 -0.7 -6.1 putative mannosyltransferase compare
PP_1355 -0.7 -6.1 Muropeptide permease AmpG compare
PP_4726 -0.7 -1.8 Chaperone protein DnaJ compare
PP_1672 -0.7 -3.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1799 -0.7 -5.7 GDP-mannose 4,6-dehydratase compare
PP_0607 -0.7 -1.7 putative Type IV pili biogenesis protein FimT compare
PP_1679 -0.7 -2.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1776 -0.7 -5.8 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_3892 -0.7 -1.6 conserved protein of unknown function compare
PP_4471 -0.7 -1.3 Magnesium transporter compare
PP_2348 -0.7 -3.2 Sensor histidine kinase compare
PP_1322 -0.7 -1.3 putative Lipoprotein compare
PP_2846 -0.7 -2.3 urease accessory protein compare
PP_1734 -0.7 -0.6 Probable septum site-determining protein MinC compare
PP_4560 -0.6 -2.3 putative Ribonuclease BN compare
PP_0122 -0.6 -1.7 conserved exported protein of unknown function compare


Specific Phenotypes

For 22 genes in this experiment

For nitrogen source Carnitine Hydrochloride in Pseudomonas putida KT2440

For nitrogen source Carnitine Hydrochloride across organisms