Experiment set28IT006 for Pseudomonas putida KT2440

Compare to:

Choline chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1986 -6.8 -4.7 3-isopropylmalate dehydratase small subunit compare
PP_0290 -5.2 -11.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1985 -5.2 -8.1 3-isopropylmalate dehydratase large subunit compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_5015 -4.7 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0082 -4.6 -6.3 tryptophan synthase alpha chain compare
PP_4724 -4.5 -16.9 Carbamoyl-phosphate synthase small chain compare
PP_4890 -4.5 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0083 -4.4 -6.1 tryptophan synthase beta chain compare
PP_1988 -4.4 -9.7 3-isopropylmalate dehydrogenase compare
PP_0292 -4.2 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5076 -4.2 -23.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_5014 -4.1 -4.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0966 -4.0 -13.8 Histidinol dehydrogenase compare
PP_4679 -4.0 -9.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4723 -4.0 -22.1 Carbamoyl-phosphate synthase large chain compare
PP_4678 -3.8 -18.4 Ketol-acid reductoisomerase compare
PP_3511 -3.8 -11.8 Branched-chain-amino-acid aminotransferase compare
PP_5075 -3.7 -15.6 glutamate synthase (NADPH) beta subunit compare
PP_5289 -3.7 -6.3 Acetylglutamate kinase compare
PP_0965 -3.7 -11.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0422 -3.7 -8.4 Indole-3-glycerol phosphate synthase compare
PP_4058 -3.7 -16.2 1,4-alpha-glucan branching enzyme compare
PP_1995 -3.6 -11.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5048 -3.6 -9.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5128 -3.6 -9.7 Dihydroxy-acid dehydratase compare
PP_1088 -3.6 -12.7 Argininosuccinate synthase compare
PP_1079 -3.6 -10.9 Ornithine carbamoyltransferase compare
PP_0420 -3.5 -15.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5185 -3.5 -9.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0691 -3.5 -7.3 Glutamate 5-kinase compare
PP_4680 -3.5 -16.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -3.4 -10.7 Imidazoleglycerol-phosphate dehydratase compare
PP_5098 -3.4 -10.3 methionine biosynthesis protein MetW compare
PP_0967 -3.4 -12.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0184 -3.4 -8.7 Argininosuccinate lyase compare
PP_5097 -3.3 -15.8 homoserine O-acetyltransferase compare
PP_0417 -3.3 -17.5 Anthranilate synthase component 1 compare
PP_0421 -3.2 -6.8 Anthranilate phosphoribosyltransferase compare
PP_2001 -3.1 -11.8 O-succinylhomoserine sulfhydrylase compare
PP_2371 -3.1 -7.6 Sulphite reductase hemoprotein, beta subunit compare
PP_5047 -3.0 -8.4 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0313 -2.7 -5.4 putative electron transfer flavoprotein beta subunit compare
PP_1025 -2.6 -12.3 2-isopropylmalate synthase compare
PP_0325 -2.5 -16.9 sarcosine oxidase subunit alpha compare
PP_0322 -2.4 -10.7 serine hydroxymethyltransferase compare
PP_1589 -2.4 -10.5 uridylyltransferase compare
PP_0324 -2.4 -10.6 sarcosine oxidase subunit delta compare
PP_0326 -2.4 -7.5 sarcosine oxidase subunit gamma compare
PP_3999 -2.4 -6.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0323 -2.3 -11.7 sarcosine oxidase subunit beta compare
PP_0308 -2.3 -13.1 putative dipeptidase compare
PP_0311 -2.3 -8.9 putative dimethylglycine dehydrogenase subunit compare
PP_1912 -2.2 -7.0 Phosphate acyltransferase compare
PP_4799 -2.2 -1.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0309 -2.1 -12.5 conserved protein of unknown function compare
PP_0312 -2.1 -9.0 electron transfer flavoprotein, alpha subunit compare
PP_0310 -2.1 -14.0 putative dimethylglycine dehydrogenase subunit compare
PP_2168 -2.1 -11.1 Transaldolase compare
PP_2327 -2.0 -9.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2328 -2.0 -7.4 Phosphoadenosine phosphosulfate reductase compare
PP_0293 -2.0 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2000 -1.9 -1.3 amidophosphoribosyl transferase compare
PP_2370 -1.9 -3.2 conserved protein of unknown function compare
PP_0339 -1.9 -6.0 Pyruvate dehydrogenase E1 component compare
PP_1216 -1.8 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0315 -1.8 -11.7 putative glycine-betaine dioxygenase subunit conserved
PP_0787 -1.8 -6.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0316 -1.7 -8.7 putative glycine-betaine dioxygenase subunit conserved
PP_5571 -1.6 -2.1 conserved protein of unknown function compare
PP_2388 -1.6 -3.3 Transporter, LysE family compare
PP_5347 -1.6 -9.6 pyruvate carboxylase subunit A compare
PP_4993 -1.5 -4.3 Glutathione synthetase compare
PP_1231 -1.5 -6.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0291 -1.5 -2.4 conserved protein of unknown function compare
PP_1109 -1.4 -10.5 Transcriptional regulator, GntR family compare
PP_5346 -1.4 -6.5 pyruvate carboxylase subunit B compare
PP_5348 -1.4 -6.9 Transcriptional regulator, LysR family compare
PP_0298 -1.4 -6.5 AraC-family transcriptional regulator conserved
PP_0294 -1.4 -5.9 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) compare
PP_1654 -1.2 -2.8 cysteine synthase B compare
PP_1110 -1.2 -3.9 serine acetyltransferase compare
PP_5748 -1.2 -2.1 cytochrome c heme lyase subunit compare
PP_4364 -1.2 -5.4 putative Anti-sigma F factor antagonist compare
PP_2390 -1.2 -7.0 Transcriptional regulator, LysR family compare
PP_5095 -1.1 -1.4 pyrroline-5-carboxylate reductase compare
PP_0393 -1.1 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1217 -1.1 -2.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5063 -1.1 -3.5 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_5227 -1.1 -5.9 diaminopimelate decarboxylase compare
PP_3198 -1.1 -1.6 Ferredoxin, 2Fe-2S compare
PP_1111 -1.1 -3.7 putative Synthetase compare
PP_4004 -1.1 -2.5 DNA translocase FtsK compare
PP_0401 -1.1 -1.4 Ribosomal RNA small subunit methyltransferase A compare
PP_0319 -1.1 -2.5 conserved protein of unknown function compare
PP_4739 -1.1 -3.0 conserved protein of unknown function compare
PP_4561 -1.0 -1.3 stress response protein compare
PP_5350 -1.0 -3.0 Transcriptional regulator, RpiR family compare
PP_0295 -1.0 -6.0 choline / betaine / carnitine ABC transporter - membrane subunit compare
PP_4964 -1.0 -1.5 D-erythrose 4-phosphate dehydrogenase compare
PP_0127 -1.0 -5.6 Thiol:disulfide interchange protein compare
PP_5064 -1.0 -5.3 choline dehydrogenase conserved
PP_1616 -1.0 -6.2 formaldehyde dehydrogenase, glutathione-dependent compare
PP_5114 -1.0 -1.5 putative adenine methyltransferase compare
PP_2499 -1.0 -1.3 conserved protein of unknown function compare
PP_0164 -1.0 -5.7 conserved protein of unknown function compare
PP_5546 -0.9 -1.7 conserved protein of unknown function compare
PP_4804 -0.9 -2.1 RlpA-like lipoprotein compare
PP_4379 -0.9 -4.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5303 -0.9 -3.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2765 -0.9 -2.8 putative Sulfonate monooxygenase MsuD compare
PP_t10 -0.9 -2.2 tRNA-Pro compare
PP_3241 -0.9 -1.9 conserved exported protein of unknown function compare
PP_1702 -0.9 -2.1 Recombination-associated protein RdgC compare
PP_3484 -0.9 -3.7 Response regulator receiver protein compare
PP_4902 -0.9 -2.9 Oligoribonuclease compare
PP_0735 -0.9 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_2740 -0.8 -2.4 Transcriptional regulator, MerR family compare
PP_0296 -0.8 -4.6 choline / betaine / carnitine ABC transporter - substrate binding protein compare
PP_4696 -0.8 -3.8 Nitrogen regulation protein NR(I) compare
PP_4880 -0.8 -4.1 exoribonuclease R compare
PP_5090 -0.8 -1.2 putative cell division protein compare
PP_5322 -0.8 -4.8 putative metal ion transporter compare
PP_2402 -0.8 -1.4 putative Sensor histidine kinase compare
PP_2575 -0.8 -1.8 conserved exported protein of unknown function compare
PP_3447 -0.8 -1.2 conserved membrane protein of unknown function compare
PP_1293 -0.8 -1.3 molybdopterin synthase small subunit compare
PP_0832 -0.8 -3.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5441 -0.8 -1.6 protein of unknown function compare
PP_3649 -0.7 -0.7 Transcriptional regulator, GntR family compare
PP_4981 -0.7 -2.0 polyisoprene-binding protein, acidic stress response factor compare
PP_4789 -0.7 -4.4 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2137 -0.7 -2.4 beta-ketoadipyl CoA thiolase, beta component compare
PP_3244 -0.7 -3.3 Magnesium transporter, MgtC family compare
PP_3647 -0.7 -2.4 putative Oxidoreductase compare
PP_2073 -0.7 -1.9 Acetyltransferase, GNAT family compare
PP_2414 -0.7 -1.1 conserved exported protein of unknown function compare
PP_4480 -0.7 -4.8 arginine N-succinyltransferase, subunit alpha compare
PP_0152 -0.7 -2.1 conserved exported protein of unknown function compare
PP_4199 -0.7 -0.9 putative Lipoprotein compare
PP_1493 -0.7 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0362 -0.7 -5.1 Biotin synthase compare
PP_4895 -0.7 -2.1 tRNA dimethylallyltransferase compare
PP_4997 -0.7 -1.7 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1683 -0.7 -2.1 Transcriptional regulator, MarR family compare
PP_4593 -0.7 -1.1 conserved protein of unknown function compare
PP_5359 -0.6 -2.1 CobW/P47K family protein compare
PP_1994 -0.6 -1.4 tRNA pseudouridine (38-40)synthase compare
PP_5233 -0.6 -3.8 ammonium transporter AmtB compare
PP_2883 -0.6 -0.9 conserved protein of unknown function compare
PP_0949 -0.6 -3.1 putative ATP-binding protein UPF0042 compare
PP_1734 -0.6 -0.8 Probable septum site-determining protein MinC compare
PP_1656 -0.6 -4.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_1435 -0.6 -2.6 DNA repair protein RecO compare
PP_1872 -0.6 -4.9 glutamate-pyruvate aminotransferase compare
PP_4722 -0.6 -3.2 Transcription elongation factor GreA compare
PP_5216 -0.6 -1.4 exopolyphosphatase compare
PP_4681 -0.6 -1.5 conserved protein of unknown function compare
PP_0025 -0.6 -1.0 hypothetical protein compare
PP_t57 -0.6 -3.1 tRNA-Arg compare
PP_4342 -0.6 -1.6 flagellar synthesis regulator, putative ATPase compare
PP_3892 -0.6 -1.5 conserved protein of unknown function compare
PP_4531 -0.6 -2.2 conserved exported protein of unknown function compare
PP_4546 -0.6 -2.5 ATP-dependent helicase HrpA compare
PP_3770 -0.6 -2.1 conserved protein of unknown function compare
PP_5035 -0.6 -3.3 Histidine utilization repressor compare
PP_2900 -0.6 -2.0 conserved protein of unknown function compare
PP_1062 -0.6 -1.5 MutT/nudix family protein compare
PP_3205 -0.6 -2.5 Fumarylacetoacetate hydrolase family protein compare
PP_1999 -0.6 -1.5 membrane protein required for colicin V production compare
PP_1268 -0.6 -2.3 putative HtrA suppressor protein sohA compare
PP_0566 -0.6 -1.2 translation-related factor compare
PP_4481 -0.6 -3.2 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_2044 -0.6 -1.4 conserved inner membrane protein of unknown function compare
PP_3757 -0.6 -1.5 Chemotaxis protein CheY compare
PP_0919 -0.6 -2.2 conserved protein of unknown function compare
PP_1508 -0.6 -2.4 conserved protein of unknown function compare
PP_2088 -0.6 -1.7 RNA polymerase sigma factor SigX compare
PP_4504 -0.6 -0.9 conserved exported protein of unknown function compare
PP_3365 -0.5 -0.8 Acetolactate synthase compare
PP_1468 -0.5 -1.2 Tyrosine recombinase XerD compare
PP_4937 -0.5 -1.0 toluene tolerance protein compare
PP_4066 -0.5 -2.1 methylglutaconyl-CoA hydratase compare
PP_3946 -0.5 -1.2 HTH-type transcriptional repressor NicR compare
PP_3102 -0.5 -2.4 conserved protein of unknown function compare
PP_0244 -0.5 -2.2 conserved protein of unknown function compare
PP_2929 -0.5 -3.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2030 -0.5 -2.6 conserved protein of unknown function compare
PP_5666 -0.5 -2.1 putative microcin B17-like processing protein, McbB family compare
PP_1615 -0.5 -3.3 Transcriptional regulator, LysR family compare
PP_3662 -0.5 -3.2 conserved protein of unknown function compare
PP_5279 -0.5 -1.3 conserved protein of unknown function compare
PP_2389 -0.5 -2.7 conserved protein of unknown function compare
PP_2624 -0.5 -2.3 conserved protein of unknown function compare
PP_2442 -0.5 -1.4 conserved protein of unknown function, DUF480 family compare
PP_2378 -0.5 -0.8 Fe/S biogenesis protein NfuA compare
PP_3837 -0.5 -2.0 inner membrane protein of unknown function compare
PP_4829 -0.5 -1.3 putative precorrin-3B synthase compare
PP_5705 -0.5 -2.0 protein of unknown function compare
PP_5471 -0.5 -0.8 putative response regulator receiver protein compare


Specific Phenotypes

For 14 genes in this experiment

For nitrogen source Choline chloride in Pseudomonas putida KT2440

For nitrogen source Choline chloride across organisms