Experiment set28IT005 for Pseudomonas putida KT2440

Compare to:

Choline chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0290 -4.7 -10.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4999 -4.6 -3.2 dihydroorotase-like protein compare
PP_1985 -4.4 -7.4 3-isopropylmalate dehydratase large subunit compare
PP_1079 -4.3 -10.0 Ornithine carbamoyltransferase compare
PP_4723 -4.3 -22.3 Carbamoyl-phosphate synthase large chain compare
PP_4678 -4.2 -18.9 Ketol-acid reductoisomerase compare
PP_5075 -4.2 -16.3 glutamate synthase (NADPH) beta subunit compare
PP_4679 -4.2 -10.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0292 -4.2 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5014 -4.2 -4.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_5076 -4.1 -22.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_0082 -4.1 -7.2 tryptophan synthase alpha chain compare
PP_1988 -4.1 -10.0 3-isopropylmalate dehydrogenase compare
PP_0967 -4.0 -13.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4058 -4.0 -15.3 1,4-alpha-glucan branching enzyme compare
PP_4890 -4.0 -6.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_0966 -4.0 -13.3 Histidinol dehydrogenase compare
PP_4680 -3.9 -17.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5098 -3.9 -10.4 methionine biosynthesis protein MetW compare
PP_5048 -3.8 -7.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0289 -3.8 -8.7 Imidazoleglycerol-phosphate dehydratase compare
PP_5289 -3.8 -6.9 Acetylglutamate kinase compare
PP_1088 -3.8 -15.4 Argininosuccinate synthase compare
PP_4724 -3.7 -10.7 Carbamoyl-phosphate synthase small chain compare
PP_1995 -3.5 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5047 -3.5 -8.7 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_3511 -3.4 -9.1 Branched-chain-amino-acid aminotransferase compare
PP_0417 -3.4 -19.7 Anthranilate synthase component 1 compare
PP_0422 -3.4 -9.8 Indole-3-glycerol phosphate synthase compare
PP_0083 -3.3 -7.1 tryptophan synthase beta chain compare
PP_1986 -3.3 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_0421 -3.3 -7.2 Anthranilate phosphoribosyltransferase compare
PP_0965 -3.3 -11.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0691 -3.3 -7.6 Glutamate 5-kinase compare
PP_0420 -3.3 -13.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0184 -3.2 -8.9 Argininosuccinate lyase compare
PP_5097 -3.2 -15.2 homoserine O-acetyltransferase compare
PP_5128 -3.1 -9.0 Dihydroxy-acid dehydratase compare
PP_0293 -3.1 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5185 -3.1 -7.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2001 -3.0 -9.4 O-succinylhomoserine sulfhydrylase compare
PP_2370 -2.9 -3.8 conserved protein of unknown function compare
PP_0313 -2.9 -3.1 putative electron transfer flavoprotein beta subunit compare
PP_1589 -2.7 -12.7 uridylyltransferase compare
PP_5015 -2.5 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2371 -2.5 -7.1 Sulphite reductase hemoprotein, beta subunit compare
PP_0324 -2.5 -9.7 sarcosine oxidase subunit delta compare
PP_2168 -2.5 -11.9 Transaldolase compare
PP_0311 -2.4 -8.7 putative dimethylglycine dehydrogenase subunit compare
PP_0325 -2.4 -15.0 sarcosine oxidase subunit alpha compare
PP_1025 -2.4 -9.1 2-isopropylmalate synthase compare
PP_0308 -2.4 -12.0 putative dipeptidase compare
PP_0326 -2.3 -7.2 sarcosine oxidase subunit gamma compare
PP_3999 -2.3 -5.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0312 -2.3 -9.3 electron transfer flavoprotein, alpha subunit compare
PP_0309 -2.3 -13.1 conserved protein of unknown function compare
PP_2328 -2.2 -7.3 Phosphoadenosine phosphosulfate reductase compare
PP_0323 -2.2 -9.9 sarcosine oxidase subunit beta compare
PP_4799 -2.1 -1.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2327 -2.1 -10.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0339 -2.1 -6.2 Pyruvate dehydrogenase E1 component compare
PP_0846 -2.1 -1.9 DnaK-like molecular chaperone specific for IscU compare
PP_0322 -2.1 -8.2 serine hydroxymethyltransferase compare
PP_0310 -2.0 -12.7 putative dimethylglycine dehydrogenase subunit compare
PP_4004 -1.9 -2.8 DNA translocase FtsK compare
PP_5347 -1.9 -11.7 pyruvate carboxylase subunit A compare
PP_0315 -1.9 -10.3 putative glycine-betaine dioxygenase subunit conserved
PP_0316 -1.8 -7.1 putative glycine-betaine dioxygenase subunit conserved
PP_1912 -1.8 -6.4 Phosphate acyltransferase compare
PP_5303 -1.8 -6.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0787 -1.7 -6.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5346 -1.6 -7.6 pyruvate carboxylase subunit B compare
PP_1231 -1.5 -6.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0888 -1.5 -3.1 Photosynthetic apparatus regulatory protein RegA compare
PP_0294 -1.5 -7.4 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) compare
PP_0298 -1.4 -6.8 AraC-family transcriptional regulator conserved
PP_0291 -1.4 -2.2 conserved protein of unknown function compare
PP_1109 -1.4 -9.1 Transcriptional regulator, GntR family compare
PP_5348 -1.4 -7.2 Transcriptional regulator, LysR family compare
PP_1110 -1.3 -3.8 serine acetyltransferase compare
PP_2388 -1.3 -4.6 Transporter, LysE family compare
PP_5441 -1.3 -3.9 protein of unknown function compare
PP_5064 -1.2 -6.8 choline dehydrogenase conserved
PP_1366 -1.2 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_2402 -1.2 -2.2 putative Sensor histidine kinase compare
PP_0295 -1.2 -5.4 choline / betaine / carnitine ABC transporter - membrane subunit compare
PP_0393 -1.1 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5063 -1.1 -3.2 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_5227 -1.1 -6.5 diaminopimelate decarboxylase compare
PP_2414 -1.0 -2.4 conserved exported protein of unknown function compare
PP_1654 -1.0 -2.3 cysteine synthase B compare
PP_0735 -1.0 -0.8 molybdopterin-synthase adenylyltransferase compare
PP_4964 -1.0 -1.4 D-erythrose 4-phosphate dehydrogenase compare
PP_1468 -1.0 -1.8 Tyrosine recombinase XerD compare
PP_4993 -1.0 -3.0 Glutathione synthetase compare
PP_1616 -0.9 -5.6 formaldehyde dehydrogenase, glutathione-dependent compare
PP_3926 -0.9 -1.5 short-chain dehydrogenase compare
PP_1111 -0.9 -3.3 putative Synthetase compare
PP_4480 -0.9 -6.1 arginine N-succinyltransferase, subunit alpha compare
PP_4532 -0.9 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1022 -0.9 -3.2 glucose 6-phosphate-1-dehydrogenase compare
PP_0296 -0.9 -5.9 choline / betaine / carnitine ABC transporter - substrate binding protein compare
PP_5475 -0.9 -1.3 conserved protein of unknown function compare
PP_5230 -0.9 -2.4 Tyrosine recombinase XerC compare
PP_4874 -0.9 -0.8 50S ribosomal protein L9 compare
PP_4828 -0.9 -1.5 Precorrin-8X methylmutase compare
PP_2070 -0.8 -2.6 Transcriptional regulator, AraC family compare
PP_5233 -0.8 -4.8 ammonium transporter AmtB compare
PP_2820 -0.8 -2.7 HTH-type transcriptional regulator nfxB compare
PP_3409 -0.8 -2.2 putative Cobalamin biosynthesis protein cobE compare
PP_2345 -0.8 -1.7 conserved exported protein of unknown function compare
PP_4696 -0.8 -3.1 Nitrogen regulation protein NR(I) compare
PP_5095 -0.8 -1.2 pyrroline-5-carboxylate reductase compare
PP_2475 -0.8 -2.8 Transcriptional regulator, TetR family compare
PP_0274 -0.8 -1.8 putative transcriptional regulator containing HTH domain compare
PP_4268 -0.8 -1.2 nucleoid-associated broad specificity regulator compare
PP_1615 -0.8 -4.7 Transcriptional regulator, LysR family compare
PP_1322 -0.8 -1.5 putative Lipoprotein compare
PP_4917 -0.7 -1.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1176 -0.7 -1.5 conserved protein of unknown function compare
PP_4895 -0.7 -1.9 tRNA dimethylallyltransferase compare
PP_0406 -0.7 -3.8 Nucleotidyltransferase family protein compare
PP_4701 -0.7 -0.9 glucose-6-phosphate isomerase compare
PP_4364 -0.7 -3.4 putative Anti-sigma F factor antagonist compare
PP_3098 -0.7 -1.0 conserved protein of unknown function compare
PP_5445 -0.7 -2.6 conserved protein of unknown function compare
PP_1554 -0.7 -1.9 conserved protein of unknown function compare
PP_5350 -0.7 -2.9 Transcriptional regulator, RpiR family compare
PP_1269 -0.7 -1.0 Universal stress protein family compare
PP_2390 -0.7 -3.8 Transcriptional regulator, LysR family compare
PP_4789 -0.7 -3.8 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2000 -0.7 -1.1 amidophosphoribosyl transferase compare
PP_0677 -0.7 -2.6 putative Lipoprotein compare
PP_1381 -0.7 -1.0 4-carboxymuconolactone decarboxylase compare
PP_0832 -0.7 -3.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4804 -0.7 -1.5 RlpA-like lipoprotein compare
PP_5035 -0.7 -3.5 Histidine utilization repressor compare
PP_1656 -0.7 -4.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_1224 -0.6 -3.7 periplasmic subunit of the TolQRA transport system compare
PP_3484 -0.6 -3.5 Response regulator receiver protein compare
PP_5331 -0.6 -2.1 Long-chain acyl-CoA thioester hydrolase compare
PP_2088 -0.6 -2.9 RNA polymerase sigma factor SigX compare
PP_5748 -0.6 -1.4 cytochrome c heme lyase subunit compare
PP_3417 -0.6 -3.0 D-gluconate transporter compare
PP_4482 -0.6 -2.7 Transcriptional regulator, AraC family compare
PP_1683 -0.6 -1.9 Transcriptional regulator, MarR family compare
PP_5216 -0.6 -1.9 exopolyphosphatase compare
PP_0362 -0.6 -4.9 Biotin synthase compare
PP_1215 -0.6 -0.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4254 -0.6 -1.5 conserved protein of unknown function compare
PP_2322 -0.6 -4.5 Major outer membrane lipoprotein compare
PP_5571 -0.6 -1.0 conserved protein of unknown function compare
PP_1346 -0.6 -3.0 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_2337 -0.6 -1.6 aconitate isomerase compare
PP_2336 -0.6 -2.3 aconitate hydratase 1 compare
PP_5322 -0.6 -3.8 putative metal ion transporter compare
PP_3384 -0.6 -2.5 gluconate 2-dehydrogenase gamma subunit compare
PP_5689 -0.6 -2.7 conserved protein of unknown function compare
PP_5176 -0.6 -2.5 conserved protein of unknown function compare
PP_4546 -0.6 -2.3 ATP-dependent helicase HrpA compare
PP_3946 -0.6 -1.2 HTH-type transcriptional repressor NicR compare
PP_1677 -0.6 -2.6 Adenosyl-cobyric acid synthase compare
PP_1994 -0.6 -1.2 tRNA pseudouridine (38-40)synthase compare
PP_5110 -0.6 -1.0 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0164 -0.6 -3.3 conserved protein of unknown function compare
PP_1217 -0.6 -1.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4880 -0.6 -2.9 exoribonuclease R compare
PP_2307 -0.6 -1.9 conserved protein of unknown function compare
PP_5313 -0.6 -0.9 DNA-binding protein HU-alpha compare
PP_5241 -0.6 -1.5 DNA-binding response regulator, LuxR family compare
PP_0246 -0.6 -1.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_1872 -0.5 -4.2 glutamate-pyruvate aminotransferase compare
PP_4561 -0.5 -0.8 stress response protein compare
PP_4910 -0.5 -1.0 conserved protein of unknown function compare
PP_2136 -0.5 -2.0 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5483 -0.5 -1.4 conserved protein of unknown function compare
PP_1876 -0.5 -2.2 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1122 -0.5 -0.9 OmpA family protein compare
PP_1218 -0.5 -1.8 putative acyl-CoA thioesterase compare
PP_2631 -0.5 -1.4 putative cellulose biosynthesis, BcsF/YhjT compare
PP_4909 -0.5 -3.1 phosphoserine phosphatase compare
PP_4362 -0.5 -2.1 conserved protein of unknown function compare
PP_5054 -0.5 -1.2 glutaredoxin 3 compare
PP_3205 -0.5 -2.0 Fumarylacetoacetate hydrolase family protein compare
PP_t13 -0.5 -1.7 tRNA-Lys compare
PP_5267 -0.5 -1.0 putative cytochrome c5 compare
PP_4531 -0.5 -2.4 conserved exported protein of unknown function compare
PP_1233 -0.5 -2.3 sulfurtransferase compare
PP_2842 -0.5 -3.0 urease accessory protein compare
PP_5279 -0.5 -1.5 conserved protein of unknown function compare
PP_3580 -0.5 -1.6 conserved protein of unknown function compare
PP_1571 -0.5 -1.7 conserved protein of unknown function compare
PP_1673 -0.5 -2.1 cobyrinate a,c-diamide synthase compare
PP_0833 -0.5 -1.2 queuine tRNA-ribosyltransferase compare
PP_4308 -0.5 -2.0 Transcriptional regulator, AsnC family compare
PP_4379 -0.5 -2.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5552 -0.5 -1.4 conserved protein of unknown function compare
PP_1834 -0.5 -1.7 conserved protein of unknown function compare
PP_0119 -0.5 -2.0 putative zinc uptake regulation protein ZUR compare
PP_1435 -0.5 -2.1 DNA repair protein RecO compare


Specific Phenotypes

For 16 genes in this experiment

For nitrogen source Choline chloride in Pseudomonas putida KT2440

For nitrogen source Choline chloride across organisms