Experiment set28IT004 for Pseudomonas putida KT2440

Compare to:

Ethanolamine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0290 -6.3 -8.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1988 -6.0 -10.0 3-isopropylmalate dehydrogenase compare
PP_0293 -5.6 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4909 -5.3 -10.7 phosphoserine phosphatase compare
PP_5075 -5.2 -14.2 glutamate synthase (NADPH) beta subunit compare
PP_5076 -5.0 -23.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_1986 -5.0 -5.9 3-isopropylmalate dehydratase small subunit compare
PP_4724 -4.8 -14.1 Carbamoyl-phosphate synthase small chain compare
PP_5014 -4.8 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0184 -4.8 -7.9 Argininosuccinate lyase compare
PP_0966 -4.7 -14.0 Histidinol dehydrogenase compare
PP_4723 -4.7 -23.4 Carbamoyl-phosphate synthase large chain compare
PP_5185 -4.7 -9.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3511 -4.6 -12.2 Branched-chain-amino-acid aminotransferase compare
PP_4679 -4.6 -8.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0082 -4.5 -6.1 tryptophan synthase alpha chain compare
PP_0083 -4.5 -5.3 tryptophan synthase beta chain compare
PP_1677 -4.4 -7.4 Adenosyl-cobyric acid synthase compare
PP_0691 -4.4 -7.1 Glutamate 5-kinase compare
PP_4678 -4.4 -19.5 Ketol-acid reductoisomerase compare
PP_1995 -4.4 -10.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -4.3 -15.7 Argininosuccinate synthase compare
PP_1985 -4.2 -6.8 3-isopropylmalate dehydratase large subunit compare
PP_0292 -4.2 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2168 -4.2 -13.0 Transaldolase compare
PP_4680 -4.1 -19.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -4.1 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0967 -4.1 -13.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5289 -4.1 -6.7 Acetylglutamate kinase compare
PP_0289 -3.9 -9.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0417 -3.8 -19.6 Anthranilate synthase component 1 compare
PP_0420 -3.8 -13.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1079 -3.8 -8.4 Ornithine carbamoyltransferase compare
PP_5128 -3.8 -9.9 Dihydroxy-acid dehydratase compare
PP_0421 -3.8 -7.9 Anthranilate phosphoribosyltransferase compare
PP_0422 -3.8 -9.7 Indole-3-glycerol phosphate synthase compare
PP_4829 -3.7 -6.6 putative precorrin-3B synthase compare
PP_0965 -3.6 -11.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4058 -3.6 -14.1 1,4-alpha-glucan branching enzyme compare
PP_3505 -3.6 -3.1 conserved protein of unknown function compare
PP_3507 -3.5 -14.9 Aerobic cobaltochelatase subunit CobN compare
PP_1681 -3.5 -13.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1672 -3.4 -8.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_5015 -3.4 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4830 -3.4 -8.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_5048 -3.4 -8.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_3508 -3.4 -4.7 Protein CobW compare
PP_1673 -3.4 -8.7 cobyrinate a,c-diamide synthase compare
PP_5098 -3.3 -10.5 methionine biosynthesis protein MetW compare
PP_1678 -3.3 -5.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1675 -3.3 -12.7 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2371 -3.2 -6.3 Sulphite reductase hemoprotein, beta subunit compare
PP_5097 -3.1 -14.9 homoserine O-acetyltransferase compare
PP_4827 -3.0 -14.7 Precorrin-2 C(20)-methyltransferase compare
PP_0542 -3.0 -10.8 ethanolamine ammonia-lyase, beta-subunit compare
PP_5155 -3.0 -4.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3409 -2.9 -4.7 putative Cobalamin biosynthesis protein cobE compare
PP_3506 -2.9 -5.2 Magnesium chelatase, subunit ChII compare
PP_2001 -2.8 -10.5 O-succinylhomoserine sulfhydrylase compare
PP_4999 -2.7 -2.7 dihydroorotase-like protein compare
PP_0543 -2.7 -13.1 ethanolamine ammonia-lyase, alpha-subunit compare
PP_4826 -2.6 -6.4 Precorrin-3B C17-methyltransferase compare
PP_1025 -2.5 -9.7 2-isopropylmalate synthase compare
PP_1679 -2.5 -6.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5047 -2.5 -6.5 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1110 -2.4 -4.3 serine acetyltransferase compare
PP_1676 -2.3 -6.2 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1349 -2.3 -7.5 ATP:cob(I)alamin adenosyltransferase conserved
PP_4696 -2.3 -6.9 Nitrogen regulation protein NR(I) compare
PP_3999 -2.2 -6.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4799 -2.2 -1.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1231 -2.2 -7.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5346 -2.1 -10.1 pyruvate carboxylase subunit B compare
PP_5347 -2.0 -9.5 pyruvate carboxylase subunit A compare
PP_1109 -2.0 -12.5 Transcriptional regulator, GntR family compare
PP_2370 -1.9 -1.9 conserved protein of unknown function compare
PP_0787 -1.8 -4.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5303 -1.8 -4.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1589 -1.8 -10.4 uridylyltransferase compare
PP_2327 -1.8 -9.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1111 -1.7 -5.4 putative Synthetase compare
PP_2088 -1.7 -5.7 RNA polymerase sigma factor SigX compare
PP_3519 -1.7 -2.0 putative Lipoprotein compare
PP_1237 -1.6 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5348 -1.6 -8.6 Transcriptional regulator, LysR family compare
PP_4004 -1.6 -2.8 DNA translocase FtsK compare
PP_1664 -1.6 -4.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_4828 -1.5 -1.1 Precorrin-8X methylmutase compare
PP_1022 -1.4 -5.6 glucose 6-phosphate-1-dehydrogenase compare
PP_4364 -1.4 -6.3 putative Anti-sigma F factor antagonist compare
PP_5095 -1.4 -1.7 pyrroline-5-carboxylate reductase compare
PP_4831 -1.4 -4.5 putative cobalt-precorrin-6A synthase compare
PP_2328 -1.3 -5.2 Phosphoadenosine phosphosulfate reductase compare
PP_4832 -1.3 -1.9 Precorrin-6x reductase compare
PP_1293 -1.3 -1.3 molybdopterin synthase small subunit compare
PP_1366 -1.3 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_3790 -1.3 -7.5 diaminopimelate epimerase compare
PP_2414 -1.2 -2.3 conserved exported protein of unknown function compare
PP_0291 -1.2 -1.3 conserved protein of unknown function compare
PP_0339 -1.2 -4.9 Pyruvate dehydrogenase E1 component compare
PP_5227 -1.1 -6.0 diaminopimelate decarboxylase compare
PP_2880 -1.1 -2.6 Transcriptional regulator, TetR family compare
PP_1912 -1.1 -4.0 Phosphate acyltransferase compare
PP_2356 -1.1 -8.0 putative Phytochrome family protein compare
PP_0546 -1.1 -7.3 sigma-54 dependent transcriptional regulator compare
PP_5022 -1.1 -2.7 Glutamine transport ATP-binding protein GlnQ compare
PP_4964 -1.1 -1.4 D-erythrose 4-phosphate dehydrogenase compare
PP_5248 -1.1 -1.9 putative hydrolase compare
PP_3376 -1.1 -4.0 putative phosphonate dehydrogenase compare
PP_0362 -1.1 -8.1 Biotin synthase compare
PP_2847 -1.1 -2.0 Urease accessory protein UreJ compare
PP_5104 -1.0 -6.3 thiazole synthase compare
PP_1783 -1.0 -0.7 dTDP-glucose pyrophosphorylase compare
PP_4726 -1.0 -3.0 Chaperone protein DnaJ compare
PP_0545 -1.0 -5.3 aldehyde dehydrogenase compare
PP_3417 -1.0 -3.9 D-gluconate transporter compare
PP_4910 -1.0 -1.5 conserved protein of unknown function compare
PP_0833 -1.0 -2.8 queuine tRNA-ribosyltransferase compare
PP_1994 -1.0 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_1702 -0.9 -2.2 Recombination-associated protein RdgC compare
PP_4804 -0.9 -2.1 RlpA-like lipoprotein compare
PP_1788 -0.9 -3.1 conserved protein of unknown function compare
PP_1674 -0.9 -2.5 5,6-dimethylbenzimidazole synthase compare
PP_3245 -0.9 -1.7 conserved protein of unknown function compare
PP_5350 -0.9 -3.5 Transcriptional regulator, RpiR family compare
PP_0188 -0.9 -2.4 putative Uroporphyrin-III C-methyltransferase compare
PP_4880 -0.9 -4.2 exoribonuclease R compare
PP_5114 -0.9 -1.4 putative adenine methyltransferase compare
PP_5233 -0.9 -5.2 ammonium transporter AmtB compare
PP_4684 -0.9 -4.9 conserved protein of unknown function with kinase-like domain compare
PP_3121 -0.8 -3.0 transcriptional regulator, LysR family compare
PP_4782 -0.8 -2.7 Phosphomethylpyrimidine kinase compare
PP_1734 -0.8 -0.5 Probable septum site-determining protein MinC compare
PP_4789 -0.8 -3.0 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2000 -0.8 -1.2 amidophosphoribosyl transferase compare
PP_5546 -0.8 -1.9 conserved protein of unknown function compare
PP_4902 -0.8 -2.3 Oligoribonuclease compare
PP_5571 -0.8 -1.3 conserved protein of unknown function compare
PP_3926 -0.8 -1.4 short-chain dehydrogenase compare
PP_5203 -0.8 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_5000 -0.7 -1.1 peptidase component of the ATP-dependent HslVU protease compare
PP_3888 -0.7 -3.2 conserved protein of unknown function compare
PP_4271 -0.7 -0.8 conserved protein of unknown function compare
PP_2354 -0.7 -4.8 Sensory box histidine kinase/response regulator compare
PP_3484 -0.7 -3.3 Response regulator receiver protein compare
PP_1362 -0.7 -1.9 pyruvate kinase II compare
PP_0801 -0.7 -1.0 conserved exported protein of unknown function compare
PP_0164 -0.7 -3.7 conserved protein of unknown function compare
PP_4895 -0.7 -2.0 tRNA dimethylallyltransferase compare
PP_1826 -0.7 -2.3 Hydrolase, isochorismatase family compare
PP_2074 -0.7 -3.3 Transcriptional regulator, LysR family compare
PP_1468 -0.7 -1.3 Tyrosine recombinase XerD compare
PP_1683 -0.7 -1.8 Transcriptional regulator, MarR family compare
PP_2144 -0.7 -1.9 Transcriptional regulator, TetR family compare
PP_2336 -0.7 -2.5 aconitate hydratase 1 compare
PP_2302 -0.7 -2.3 DNA-binding, ATP-dependent protease compare
PP_0566 -0.7 -1.3 translation-related factor compare
PP_4695 -0.7 -4.7 Sensory box histidine kinase compare
PP_2402 -0.7 -1.4 putative Sensor histidine kinase compare
PP_3378 -0.7 -1.3 putative 2-ketogluconokinase compare
PP_2345 -0.7 -1.7 conserved exported protein of unknown function compare
PP_5055 -0.7 -3.0 Sulfurtransferase compare
PP_3286 -0.7 -2.8 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_5533 -0.6 -1.2 conserved protein of unknown function compare
PP_4340 -0.6 -1.9 response regulator for chemotactic signal transduction compare
PP_2137 -0.6 -1.3 beta-ketoadipyl CoA thiolase, beta component compare
PP_1233 -0.6 -2.8 sulfurtransferase compare
PP_5035 -0.6 -3.3 Histidine utilization repressor compare
PP_0949 -0.6 -2.9 putative ATP-binding protein UPF0042 compare
PP_2820 -0.6 -2.1 HTH-type transcriptional regulator nfxB compare
PP_2550 -0.6 -1.6 putative transcriptional regulatory protein compare
PP_1224 -0.6 -3.3 periplasmic subunit of the TolQRA transport system compare
PP_4546 -0.6 -2.5 ATP-dependent helicase HrpA compare
PP_0002 -0.6 -3.9 probable chromosome partition protein compare
PP_3377 -0.6 -4.7 2-ketogluconate transporter, putative compare
PP_5045 -0.6 -2.4 tRNA sulfurtransferase compare
PP_5471 -0.6 -1.5 putative response regulator receiver protein compare
PP_3110 -0.6 -1.3 protein of unknown function compare
PP_4681 -0.6 -1.7 conserved protein of unknown function compare
PP_0630 -0.6 -0.9 DNA gyrase inhibitor YacG compare
PP_2378 -0.6 -0.9 Fe/S biogenesis protein NfuA compare
PP_2322 -0.6 -3.3 Major outer membrane lipoprotein compare
PP_0544 -0.6 -3.1 Ethanolamine transporter compare
PP_3946 -0.6 -1.0 HTH-type transcriptional repressor NicR compare
PP_3380 -0.6 -2.4 2-ketogluconate utilization repressor compare
PP_5027 -0.6 -1.2 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0283 -0.6 -1.6 Arginine/ornithine transport ATP-binding protein AotP compare
PP_2631 -0.6 -1.5 putative cellulose biosynthesis, BcsF/YhjT compare
PP_0536 -0.6 -2.5 conserved protein of unknown function compare
PP_2145 -0.6 -3.6 beta-N-acetylglucosaminidase compare
PP_0435 -0.6 -5.0 Peptidase, M23/M37 family compare
PP_0122 -0.6 -2.2 conserved exported protein of unknown function compare
PP_2433 -0.6 -1.4 conserved protein of unknown function compare
PP_0832 -0.6 -2.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0893 -0.5 -2.3 ThiJ/PfpI family protein compare
PP_4917 -0.5 -1.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2929 -0.5 -3.7 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5430 -0.5 -2.0 protein of unknown function compare
PP_2547 -0.5 -1.3 Transcriptional regulator, LysR family compare
PP_0214 -0.5 -2.9 4-aminobutyrate aminotransferase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Ethanolamine in Pseudomonas putida KT2440

For nitrogen source Ethanolamine across organisms