Experiment set28IT003 for Pseudomonas putida KT2440

Compare to:

Ethanolamine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_3511 -5.7 -10.9 Branched-chain-amino-acid aminotransferase compare
PP_4890 -5.1 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_1988 -5.0 -11.7 3-isopropylmalate dehydrogenase compare
PP_4724 -5.0 -11.4 Carbamoyl-phosphate synthase small chain compare
PP_0966 -5.0 -14.8 Histidinol dehydrogenase compare
PP_0691 -5.0 -7.5 Glutamate 5-kinase compare
PP_5075 -4.8 -15.8 glutamate synthase (NADPH) beta subunit compare
PP_2168 -4.8 -12.7 Transaldolase compare
PP_4678 -4.8 -18.7 Ketol-acid reductoisomerase compare
PP_0083 -4.7 -4.6 tryptophan synthase beta chain compare
PP_5076 -4.7 -22.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_5289 -4.7 -6.4 Acetylglutamate kinase compare
PP_4723 -4.7 -24.2 Carbamoyl-phosphate synthase large chain compare
PP_5185 -4.7 -9.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1985 -4.6 -8.8 3-isopropylmalate dehydratase large subunit compare
PP_0290 -4.6 -10.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1088 -4.6 -14.9 Argininosuccinate synthase compare
PP_0082 -4.5 -6.1 tryptophan synthase alpha chain compare
PP_5048 -4.5 -9.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4679 -4.4 -8.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0422 -4.4 -8.0 Indole-3-glycerol phosphate synthase compare
PP_0967 -4.4 -13.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0184 -4.4 -9.3 Argininosuccinate lyase compare
PP_0292 -4.4 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0293 -4.2 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4909 -4.2 -12.0 phosphoserine phosphatase compare
PP_0420 -4.1 -13.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0289 -4.1 -10.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0417 -4.0 -19.2 Anthranilate synthase component 1 compare
PP_4680 -4.0 -18.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -4.0 -12.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5155 -3.9 -5.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0421 -3.8 -7.2 Anthranilate phosphoribosyltransferase compare
PP_1672 -3.8 -9.2 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4058 -3.8 -15.8 1,4-alpha-glucan branching enzyme compare
PP_0965 -3.8 -12.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3505 -3.7 -2.8 conserved protein of unknown function compare
PP_1673 -3.7 -8.9 cobyrinate a,c-diamide synthase compare
PP_1986 -3.7 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_5098 -3.7 -11.3 methionine biosynthesis protein MetW compare
PP_4829 -3.6 -6.5 putative precorrin-3B synthase compare
PP_4828 -3.6 -2.4 Precorrin-8X methylmutase compare
PP_1679 -3.6 -6.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2371 -3.5 -7.1 Sulphite reductase hemoprotein, beta subunit compare
PP_0542 -3.5 -12.0 ethanolamine ammonia-lyase, beta-subunit compare
PP_3508 -3.5 -4.5 Protein CobW compare
PP_5128 -3.5 -8.3 Dihydroxy-acid dehydratase compare
PP_1681 -3.5 -13.0 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4999 -3.4 -3.6 dihydroorotase-like protein compare
PP_5014 -3.3 -4.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_3507 -3.3 -15.9 Aerobic cobaltochelatase subunit CobN compare
PP_4827 -3.2 -14.7 Precorrin-2 C(20)-methyltransferase compare
PP_1079 -3.1 -9.6 Ornithine carbamoyltransferase compare
PP_0543 -3.1 -13.9 ethanolamine ammonia-lyase, alpha-subunit compare
PP_1675 -3.0 -11.2 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4826 -3.0 -8.6 Precorrin-3B C17-methyltransferase compare
PP_3409 -2.9 -4.8 putative Cobalamin biosynthesis protein cobE compare
PP_5097 -2.9 -14.1 homoserine O-acetyltransferase compare
PP_5015 -2.9 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1678 -2.8 -5.5 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4830 -2.8 -6.9 precorrin-6Y C(5,15)-methyltransferase compare
PP_2001 -2.6 -12.4 O-succinylhomoserine sulfhydrylase compare
PP_4832 -2.5 -4.0 Precorrin-6x reductase compare
PP_1025 -2.4 -8.6 2-isopropylmalate synthase compare
PP_1231 -2.3 -7.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1677 -2.3 -5.0 Adenosyl-cobyric acid synthase compare
PP_0787 -2.3 -6.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4004 -2.2 -2.2 DNA translocase FtsK compare
PP_3506 -2.2 -3.8 Magnesium chelatase, subunit ChII compare
PP_4799 -2.2 -1.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4696 -2.2 -7.0 Nitrogen regulation protein NR(I) compare
PP_5047 -2.1 -6.8 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1349 -2.1 -5.6 ATP:cob(I)alamin adenosyltransferase conserved
PP_1110 -2.1 -3.0 serine acetyltransferase compare
PP_1676 -2.1 -6.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1109 -2.0 -12.2 Transcriptional regulator, GntR family compare
PP_5303 -2.0 -6.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2327 -2.0 -11.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3999 -1.8 -5.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5347 -1.8 -10.0 pyruvate carboxylase subunit A compare
PP_0291 -1.7 -2.5 conserved protein of unknown function compare
PP_1664 -1.7 -3.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_0339 -1.7 -5.8 Pyruvate dehydrogenase E1 component compare
PP_1994 -1.7 -2.8 tRNA pseudouridine (38-40)synthase compare
PP_5348 -1.7 -8.4 Transcriptional regulator, LysR family compare
PP_1111 -1.6 -4.1 putative Synthetase compare
PP_1022 -1.5 -4.9 glucose 6-phosphate-1-dehydrogenase compare
PP_5227 -1.5 -7.5 diaminopimelate decarboxylase compare
PP_5346 -1.5 -6.8 pyruvate carboxylase subunit B compare
PP_4831 -1.5 -3.9 putative cobalt-precorrin-6A synthase compare
PP_2370 -1.4 -2.5 conserved protein of unknown function compare
PP_1589 -1.4 -8.2 uridylyltransferase compare
PP_0735 -1.4 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_1293 -1.3 -1.8 molybdopterin synthase small subunit compare
PP_2088 -1.3 -3.1 RNA polymerase sigma factor SigX compare
PP_5571 -1.2 -1.7 conserved protein of unknown function compare
PP_2328 -1.2 -5.3 Phosphoadenosine phosphosulfate reductase compare
PP_3790 -1.1 -7.2 diaminopimelate epimerase compare
PP_4880 -1.1 -5.1 exoribonuclease R compare
PP_0401 -1.1 -1.2 Ribosomal RNA small subunit methyltransferase A compare
PP_4726 -1.1 -3.2 Chaperone protein DnaJ compare
PP_1366 -1.1 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_2000 -1.1 -1.4 amidophosphoribosyl transferase compare
PP_3286 -1.0 -4.1 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2356 -1.0 -7.0 putative Phytochrome family protein compare
PP_5233 -1.0 -6.2 ammonium transporter AmtB compare
PP_3241 -0.9 -1.9 conserved exported protein of unknown function compare
PP_1654 -0.9 -2.3 cysteine synthase B compare
PP_1217 -0.9 -2.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0719 -0.9 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1468 -0.9 -1.3 Tyrosine recombinase XerD compare
PP_5090 -0.9 -1.3 putative cell division protein compare
PP_3417 -0.9 -4.9 D-gluconate transporter compare
PP_5104 -0.9 -5.4 thiazole synthase compare
PP_1020 -0.9 -2.8 putative glucose-6-phosphate 1-epimerase compare
PP_2144 -0.9 -2.9 Transcriptional regulator, TetR family compare
PP_0545 -0.9 -4.8 aldehyde dehydrogenase compare
PP_0362 -0.9 -6.3 Biotin synthase compare
PP_5667 -0.9 -2.8 putative microcin B17-like-processing protein, McbC family compare
PP_2074 -0.8 -2.9 Transcriptional regulator, LysR family compare
PP_2820 -0.8 -2.7 HTH-type transcriptional regulator nfxB compare
PP_2475 -0.8 -3.0 Transcriptional regulator, TetR family compare
PP_3378 -0.8 -1.8 putative 2-ketogluconokinase compare
PP_4789 -0.8 -3.9 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_3926 -0.8 -1.9 short-chain dehydrogenase compare
PP_1216 -0.8 -1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4902 -0.8 -2.7 Oligoribonuclease compare
PP_4961 -0.8 -1.4 putative Lipoprotein compare
PP_4695 -0.8 -5.5 Sensory box histidine kinase compare
PP_4964 -0.8 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_4482 -0.8 -3.6 Transcriptional regulator, AraC family compare
PP_3384 -0.8 -2.6 gluconate 2-dehydrogenase gamma subunit compare
PP_0546 -0.8 -5.3 sigma-54 dependent transcriptional regulator compare
PP_5748 -0.8 -1.6 cytochrome c heme lyase subunit compare
PP_4364 -0.8 -2.9 putative Anti-sigma F factor antagonist compare
PP_5338 -0.8 -1.1 aspartate ammonia-lyase compare
PP_5054 -0.8 -1.3 glutaredoxin 3 compare
PP_3164 -0.8 -1.3 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_3376 -0.8 -4.0 putative phosphonate dehydrogenase compare
PP_4895 -0.7 -2.1 tRNA dimethylallyltransferase compare
PP_5110 -0.7 -2.2 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0832 -0.7 -2.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1674 -0.7 -1.8 5,6-dimethylbenzimidazole synthase compare
PP_4561 -0.7 -0.9 stress response protein compare
PP_2345 -0.7 -1.5 conserved exported protein of unknown function compare
PP_5717 -0.7 -2.4 conserved protein of unknown function compare
PP_0002 -0.7 -4.3 probable chromosome partition protein compare
PP_1912 -0.7 -3.1 Phosphate acyltransferase compare
PP_1683 -0.7 -2.5 Transcriptional regulator, MarR family compare
PP_4481 -0.7 -3.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1734 -0.7 -0.8 Probable septum site-determining protein MinC compare
PP_3484 -0.7 -3.8 Response regulator receiver protein compare
PP_5000 -0.7 -1.6 peptidase component of the ATP-dependent HslVU protease compare
PP_5350 -0.7 -2.9 Transcriptional regulator, RpiR family compare
PP_5279 -0.7 -1.7 conserved protein of unknown function compare
PP_0119 -0.7 -3.2 putative zinc uptake regulation protein ZUR compare
PP_4531 -0.7 -1.7 conserved exported protein of unknown function compare
PP_1164 -0.7 -1.5 Transcriptional regulator, LysR family compare
PP_0775 -0.6 -0.7 conserved protein of unknown function compare
PP_0544 -0.6 -3.2 Ethanolamine transporter compare
PP_3244 -0.6 -3.1 Magnesium transporter, MgtC family compare
PP_3239 -0.6 -2.0 putative cointegrate resolution protein T Tn4652 compare
PP_2378 -0.6 -0.9 Fe/S biogenesis protein NfuA compare
PP_4897 -0.6 -2.6 N-acetylmuramoyl-L-alanine amidase compare
PP_2756 -0.6 -2.4 conserved protein of unknown function compare
PP_0833 -0.6 -1.9 queuine tRNA-ribosyltransferase compare
PP_1987 -0.6 -1.7 Methlytransferase, UbiE/COQ5 family compare
PP_1528 -0.6 -2.1 conserved protein of unknown function compare
PP_0274 -0.6 -1.4 putative transcriptional regulator containing HTH domain compare
PP_2322 -0.6 -4.5 Major outer membrane lipoprotein compare
PP_2433 -0.6 -1.6 conserved protein of unknown function compare
PP_1224 -0.6 -3.9 periplasmic subunit of the TolQRA transport system compare
PP_5500 -0.6 -2.2 protein of unknown function compare
PP_4910 -0.6 -1.0 conserved protein of unknown function compare
PP_2354 -0.6 -4.0 Sensory box histidine kinase/response regulator compare
PP_3649 -0.6 -0.7 Transcriptional regulator, GntR family compare
PP_2929 -0.6 -3.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1233 -0.6 -2.7 sulfurtransferase compare
PP_4008 -0.6 -3.1 ATP-dependent serine protease compare
PP_3377 -0.6 -4.7 2-ketogluconate transporter, putative compare
PP_1999 -0.6 -1.4 membrane protein required for colicin V production compare
PP_2054 -0.6 -1.6 putative DNA-binding transcriptional regulator compare
PP_5508 -0.6 -1.0 conserved protein of unknown function compare
PP_0152 -0.6 -1.7 conserved exported protein of unknown function compare
PP_3776 -0.6 -4.0 putative permease (RarD protein) compare
PP_1214 -0.6 -1.6 putative transcriptional regulatory protein compare
PP_3789 -0.6 -3.8 putative Efflux transporter compare
PP_1702 -0.6 -1.5 Recombination-associated protein RdgC compare
PP_0435 -0.6 -4.9 Peptidase, M23/M37 family compare
PP_3411 -0.6 -1.4 conserved protein of unknown function compare
PP_3105 -0.6 -1.1 conserved membrane protein of unknown function compare
PP_5329 -0.6 -2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4684 -0.6 -3.2 conserved protein of unknown function with kinase-like domain compare
PP_0164 -0.6 -3.2 conserved protein of unknown function compare
PP_2307 -0.5 -1.8 conserved protein of unknown function compare
PP_4060 -0.5 -4.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_2631 -0.5 -1.4 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1188 -0.5 -3.2 C4-dicarboxylate transport protein compare
PP_4546 -0.5 -2.2 ATP-dependent helicase HrpA compare
PP_3380 -0.5 -2.2 2-ketogluconate utilization repressor compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Ethanolamine in Pseudomonas putida KT2440

For nitrogen source Ethanolamine across organisms