| | gene | name | fitness | t score | description | |
|---|
| b3764 | yifE | +3.4 | 21.9 | hypothetical protein (NCBI) | compare |
| b4480 | hdfR | +3.3 | 18.8 | transcriptional regulator HdfR (NCBI) | compare |
| b2289 | lrhA | +3.0 | 24.2 | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | compare |
| b3229 | sspA | +2.7 | 9.6 | stringent starvation protein A (NCBI) | compare |
| b3753 | rbsR | +2.6 | 19.3 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2684 | mprA | +2.4 | 13.8 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b2617 | smpA | +2.4 | 10.2 | small membrane protein A (VIMSS) | compare |
| b2512 | yfgL | +2.3 | 12.0 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b0178 | hlpA | +2.1 | 6.2 | periplasmic chaperone (NCBI) | compare |
| b2572 | rseA | +2.0 | 8.3 | anti-sigma factor (NCBI) | compare |
| b2571 | rseB | +1.9 | 14.2 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b3752 | rbsK | +1.8 | 10.1 | ribokinase (NCBI) | compare |
| b1642 | slyA | +1.8 | 5.9 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b2494 | yfgC | +1.8 | 12.7 | predicted peptidase (NCBI) | compare |
| b1085 | b1085 | +1.5 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1332 | ynaJ | +1.5 | 0.9 | predicted inner membrane protein (NCBI) | compare |
| b0145 | dksA | +1.5 | 7.3 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b0232 | yafN | +1.3 | 1.4 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b0957 | ompA | +1.3 | 4.8 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b4503 | yafF | +1.3 | 1.2 | no description | compare |
| b0889 | lrp | +1.3 | 5.3 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b3979 | thrT | +1.2 | 0.4 | tRNA-Thr (NCBI) | compare |
| b1542 | ydfI | +1.1 | 2.8 | predicted mannonate dehydrogenase (NCBI) | compare |
| b3404 | envZ | +1.0 | 7.6 | osmolarity sensor protein (NCBI) | compare |
| b4025 | pgi | +1.0 | 7.3 | glucose-6-phosphate isomerase (NCBI) | compare |
| b0226 | dinJ | +1.0 | 3.9 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b4451 | ryhB | +1.0 | 1.8 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b3643 | rph | +0.9 | 3.9 | ribonuclease PH (NCBI) | compare |
| b3096 | yqjB | +0.9 | 6.4 | hypothetical protein (NCBI) | compare |
| b3194 | yrbE | +0.9 | 6.9 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b0053 | surA | +0.9 | 5.9 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b4172 | hfq | +0.9 | 1.5 | RNA-binding protein Hfq (NCBI) | compare |
| b1349 | recT | +0.9 | 3.9 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b3163 | nlpI | +0.9 | 5.9 | hypothetical protein (NCBI) | compare |
| b1914 | uvrY | +0.9 | 4.0 | response regulator (NCBI) | compare |
| b2939 | yqgB | +0.9 | 1.0 | predicted protein (RefSeq) | compare |
| b1422 | ydcI | +0.8 | 5.7 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b2183 | rsuA | +0.8 | 3.0 | 16S rRNA pseudouridylate 516 synthase (NCBI) | compare |
| b1707 | ydiV | +0.8 | 4.5 | hypothetical protein (NCBI) | compare |
| b1361 | ydaW | +0.8 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b2741 | rpoS | +0.8 | 5.3 | RNA polymerase sigma factor (NCBI) | compare |
| b1758 | b1758 | +0.8 | 1.3 | putative cytochrome oxidase (VIMSS) | compare |
| b4685 | yrbN | +0.8 | 3.4 | expressed protein (RefSeq) | compare |
| b4450 | arcZ | +0.8 | 1.7 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b3234 | degQ | +0.8 | 5.5 | serine endoprotease, periplasmic (NCBI) | compare |
| b1101 | ptsG | +0.8 | 5.8 | fused glucose-specific PTS enzymes: IIB component/IIC component (NCBI) | compare |
| b2346 | vacJ | +0.8 | 4.2 | predicted lipoprotein (NCBI) | compare |
| b1480 | sra | +0.7 | 1.7 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b1954 | dsrA | +0.7 | 1.5 | regulatory antisense RNA (NCBI) | compare |
| b2258 | b2258 | +0.7 | 1.2 | putative transport/receptor protein (VIMSS) | compare |
| b0404 | yajB | +0.7 | 3.5 | hypothetical protein (NCBI) | compare |
| b2377 | yfdY | +0.7 | 2.4 | predicted inner membrane protein (NCBI) | compare |
| b0549 | ybcO | +0.7 | 1.7 | DLP12 prophage; predicted protein (NCBI) | compare |
| b2934 | cmtB | +0.7 | 0.8 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1150 | ymfR | +0.7 | 0.9 | e14 prophage; predicted protein (NCBI) | compare |
| b1600 | mdtJ | +0.7 | 1.7 | multidrug efflux system transporter (NCBI) | compare |
| b2096 | gatY | +0.7 | 3.2 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b2786 | barA | +0.6 | 5.8 | hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) | compare |
| b3193 | yrbD | +0.6 | 4.8 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1400 | paaY | +0.6 | 2.2 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b1743 | spy | +0.6 | 2.3 | envelope stress induced periplasmic protein (NCBI) | compare |
| b4545 | ypdJ | +0.6 | 1.1 | no description | compare |
| b0688 | pgm | +0.6 | 2.4 | phosphoglucomutase (NCBI) | compare |
| b2911 | ssrS | +0.6 | 1.6 | 6S regulatory RNA (NCBI) | compare |
| b1289 | ycjD | +0.6 | 2.8 | hypothetical protein (NCBI) | compare |
| b2215 | ompC | +0.6 | 3.8 | outer membrane porin protein C (NCBI) | compare |
| b4538 | yoeF | +0.6 | 0.9 | hypothetical protein (RefSeq) | compare |
| b2945 | endA | +0.6 | 4.3 | DNA-specific endonuclease I (NCBI) | compare |
| b3466 | yhhL | +0.6 | 2.9 | conserved inner membrane protein (NCBI) | compare |
| b1971 | yedY | +0.6 | 3.2 | hypothetical protein (NCBI) | compare |
| b3192 | yrbC | +0.6 | 4.4 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b4511 | ybdZ | +0.6 | 3.0 | hypothetical protein (NCBI) | compare |
| b0828 | iaaA | +0.6 | 2.8 | L-asparaginase (NCBI) | compare |
| b1895 | yecG | +0.6 | 2.4 | universal stress protein (NCBI) | compare |
| b3022 | b3022 | +0.6 | 4.1 | predicted cyanide hydratase (NCBI) | compare |
| b1347 | ydaC | +0.6 | 0.3 | Rac prophage; predicted protein (NCBI) | compare |
| b1514 | lsrC | +0.6 | 1.6 | AI2 transporter (NCBI) | compare |
| b0870 | ltaE | +0.6 | 1.6 | L-allo-threonine aldolase, PLP-dependent (NCBI) | compare |
| b3075 | ebgR | +0.6 | 2.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3666 | uhpT | +0.6 | 3.9 | sugar phosphate antiporter (NCBI) | compare |
| b3341 | rpsG | +0.6 | 1.1 | 30S ribosomal protein S7 (NCBI) | compare |
| b2807 | ygdD | +0.6 | 3.0 | conserved inner membrane protein (NCBI) | compare |
| b0796 | ybiH | +0.5 | 2.0 | putative transcriptional regulator (VIMSS) | compare |
| b1818 | manY | +0.5 | 1.5 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b2292 | yfbS | +0.5 | 3.8 | predicted transporter (NCBI) | compare |
| b4596 | yciZ | +0.5 | 0.8 | hypothetical protein (RefSeq) | compare |
| b2445 | yffN | +0.5 | 2.0 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1806 | yeaY | +0.5 | 1.6 | predicted lipoprotein (NCBI) | compare |
| b4215 | ytfI | +0.5 | 1.3 | hypothetical protein (NCBI) | compare |
| b4078 | yjcO | +0.5 | 4.3 | hypothetical protein (NCBI) | compare |
| b3292 | zntR | +0.5 | 2.4 | zinc-responsive transcriptional regulator (NCBI) | compare |
| b1446 | ydcY | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b3129 | sohA | +0.5 | 1.9 | predicted regulator (NCBI) | compare |
| b0990 | cspG | +0.5 | 0.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b0453 | ybaY | +0.5 | 3.8 | glycoprotein/polysaccharide metabolism (VIMSS) | compare |
| b1821 | b1821 | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2896 | ygfX | +0.5 | 2.3 | hypothetical protein (NCBI) | compare |
| b3403 | pck | +0.5 | 4.0 | phosphoenolpyruvate carboxykinase (NCBI) | compare |
| b1520 | b1520 | +0.5 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3430 | glgC | +0.5 | 3.6 | glucose-1-phosphate adenylyltransferase (NCBI) | compare |
| b0607 | uspG | +0.5 | 2.8 | universal stress protein UP12 (NCBI) | compare |
| b1279 | yciS | +0.5 | 0.7 | conserved inner membrane protein (NCBI) | compare |
| b2962 | yggX | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b0825 | mipB | +0.5 | 2.5 | putative transaldolase (VIMSS) | compare |
| b1111 | ycfQ | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b3191 | yrbB | +0.5 | 3.4 | orf, hypothetical protein (VIMSS) | compare |
| b1566 | flxA | +0.5 | 2.3 | Qin prophage; predicted protein (NCBI) | compare |
| b3405 | ompR | +0.5 | 3.0 | osmolarity response regulator (NCBI) | compare |
| b1487 | ddpA | +0.5 | 2.6 | D-ala-D-a la transporter subunit (NCBI) | compare |
| b1205 | ychH | +0.5 | 1.5 | predicted inner membrane protein (NCBI) | compare |
| b2814 | metZ | +0.5 | 1.0 | tRNA-Met (NCBI) | compare |
| b2356 | yfdM | +0.5 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4406 | yaeP | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b1307 | pspD | +0.5 | 1.1 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b1661 | cfa | +0.5 | 2.9 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b2794 | yqcD | +0.5 | 3.3 | hypothetical protein (NCBI) | compare |
| b0218 | yafU | +0.5 | 1.7 | predicted inner membrane protein (RefSeq) | compare |
| b0435 | bolA | +0.5 | 2.2 | possible regulator of murein genes (VIMSS) | compare |
| b3188 | sfsB | +0.5 | 2.6 | DNA-binding transcriptional activator of maltose metabolism (NCBI) | compare |
| b0001 | thrL | +0.5 | 0.8 | thr operon leader peptide (NCBI) | compare |
| b3658 | selC | +0.5 | 1.6 | tRNA-Sec (NCBI) | compare |
| b3071 | yqjI | +0.5 | 2.2 | predicted transcriptional regulator (NCBI) | compare |
| b1936 | intG | +0.4 | 0.7 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1709 | btuD | +0.4 | 0.6 | vitamin B12-transporter ATPase (NCBI) | compare |
| b2642 | yfjW | +0.4 | 0.5 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b4631 | ykgQ | +0.4 | 1.2 | no description | compare |
| b0527 | ybcI | +0.4 | 2.2 | conserved inner membrane protein (NCBI) | compare |
| b3106 | yhaK | +0.4 | 1.5 | predicted pirin-related protein (NCBI) | compare |
| b0560 | nohB | +0.4 | 0.8 | DLP12 prophage; DNA packaging protein (NCBI) | compare |
| b0247 | ykfG | +0.4 | 0.8 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b2229 | b2229 | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3484 | yhhI | +0.4 | 1.6 | predicted transposase (NCBI) | compare |
| b3765 | yifB | +0.4 | 3.4 | predicted bifunctional enzyme and transcriptional regulator (RefSeq) | compare |
| b1757 | b1757 | +0.4 | 2.3 | putative thiosulfate sulfur transferase (VIMSS) | compare |
| b1871 | yecP | +0.4 | 2.2 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b0830 | yliB | +0.4 | 2.7 | predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b1335 | ogt | +0.4 | 1.5 | O-6-alkylguanine-DNA:cysteine-protein methyltransferase (NCBI) | compare |
| b4533 | ynfO | +0.4 | 1.7 | Qin prophage; predicted protein (NCBI) | compare |
| b2217 | rcsB | +0.4 | 2.3 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b2006 | yeeW | +0.4 | 1.8 | CP4-44 prophage; predicted protein (RefSeq) | compare |
| b0925 | ycbB | +0.4 | 3.4 | predicted carboxypeptidase (NCBI) | compare |
| b2144 | sanA | +0.4 | 3.3 | hypothetical protein (NCBI) | compare |
| b4068 | yjcH | +0.4 | 1.5 | required for glycolate transport, with actP (from data) | compare |
| b0772 | ybhC | +0.4 | 3.2 | predicted pectinesterase (NCBI) | compare |
| b1233 | ychJ | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b4608 | ryfC | +0.4 | 1.4 | Novel sRNA, function unknown (RefSeq) | compare |
| b1819 | manZ | +0.4 | 2.2 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b2674 | nrdI | +0.4 | 2.5 | hypothetical protein (NCBI) | compare |
| b3672 | ivbL | +0.4 | 1.6 | ilvB operon leader peptide (NCBI) | compare |
| b0819 | ybiS | +0.4 | 2.8 | hypothetical protein (NCBI) | compare |
| b1418 | cybB | +0.4 | 1.5 | cytochrome b(561) (VIMSS) | compare |
| b2197 | ccmE | +0.4 | 1.7 | periplasmic heme chaperone (NCBI) | compare |
| b3932 | hslV | +0.4 | 3.4 | ATP-dependent protease peptidase subunit (NCBI) | compare |
| b1595 | ynfL | +0.4 | 1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3002 | yqhA | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b1847 | yebF | +0.4 | 0.7 | predicted protein (RefSeq) | compare |
| b3195 | yrbF | +0.4 | 3.0 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b1916 | sdiA | +0.4 | 2.9 | DNA-binding transcriptional activator (NCBI) | compare |
| b1337 | abgB | +0.4 | 1.3 | predicted peptidase, aminobenzoyl-glutamate utilization protein (NCBI) | compare |
| b4698 | mgrR | +0.4 | 1.9 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b0929 | ompF | +0.4 | 1.7 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b2114 | metG | +0.4 | 1.1 | methionyl-tRNA synthetase (NCBI) | compare |
| b3573 | yiaI | +0.4 | 3.1 | predicted hydrogenase, 4Fe-4S ferredoxin-type component (NCBI) | compare |
| b1752 | ydjZ | +0.4 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b0487 | cueR | +0.4 | 2.0 | DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) | compare |
| b1553 | ydfP | +0.4 | 1.1 | Qin prophage; conserved protein (NCBI) | compare |
| b1159 | mcrA | +0.4 | 0.8 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b3425 | glpE | +0.4 | 2.4 | thiosulfate sulfurtransferase (NCBI) | compare |
| b4546 | ypeB | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |
| b4644 | ypjI | +0.4 | 2.4 | no description | compare |
| b1628 | rsxB | +0.4 | 0.9 | electron transport complex protein RnfB (NCBI) | compare |
| b0388 | aroL | +0.4 | 1.7 | shikimate kinase II (NCBI) | compare |
| b2836 | aas | +0.4 | 3.0 | 2-acyl-glycerophospho-ethanolamine acyltransferase (NCBI) | compare |
| b0595 | entB | +0.4 | 3.1 | isochorismatase (NCBI) | compare |
| b1958 | yedI | +0.4 | 1.8 | conserved inner membrane protein (NCBI) | compare |
| b4493 | gapC | +0.4 | 1.3 | no description | compare |
| b4594 | ymgJ | +0.4 | 1.3 | hypothetical protein (RefSeq) | compare |
| b2570 | rseC | +0.4 | 2.7 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b4558 | yifL | +0.4 | 2.4 | predicted lipoprotein (NCBI) | compare |
| b2154 | yeiG | +0.4 | 1.8 | predicted esterase (NCBI) | compare |
| b2795 | ygdH | +0.4 | 2.9 | hypothetical protein (NCBI) | compare |
| b0225 | yafQ | +0.4 | 1.6 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b1741 | ydjQ | +0.4 | 1.7 | endonuclease of nucleotide excision repair (NCBI) | compare |
| b2262 | menB | +0.4 | 1.1 | naphthoate synthase (NCBI) | compare |
| b1615 | uidC | +0.4 | 1.9 | membrane-associated protein (VIMSS) | compare |
| b4110 | yjcZ | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1513 | lsrA | +0.4 | 2.4 | fused AI2 transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b2293 | yfbT | +0.4 | 1.5 | putative phosphatase (VIMSS) | compare |
| b0280 | yagN | +0.4 | 2.3 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b1285 | gmr | +0.4 | 2.2 | modulator of Rnase II stability (NCBI) | compare |
| b0240 | crl | +0.4 | 2.5 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2004 | yeeU | +0.4 | 1.5 | CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b1733 | chbG | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b3888 | yiiD | +0.4 | 3.0 | predicted acetyltransferase (NCBI) | compare |
| b1558 | cspF | +0.4 | 1.2 | Qin prophage; cold shock protein (NCBI) | compare |
| b2156 | lysP | +0.4 | 2.5 | lysine transporter (NCBI) | compare |
| b4011 | yjaA | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b1326 | mpaA | +0.4 | 1.8 | murein peptide amidase A (RefSeq) | compare |
| b1261 | trpB | +0.4 | 1.2 | tryptophan synthase subunit beta (NCBI) | compare |
| b1582 | ynfA | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |