Experiment set27IT073 for Pseudomonas putida KT2440

Compare to:

L-Serine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0290 -6.6 -10.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1079 -6.5 -8.9 Ornithine carbamoyltransferase compare
PP_5048 -6.4 -8.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5075 -6.4 -14.3 glutamate synthase (NADPH) beta subunit compare
PP_0787 -6.4 -6.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0420 -6.3 -15.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0082 -6.2 -6.1 tryptophan synthase alpha chain compare
PP_4724 -6.0 -8.2 Carbamoyl-phosphate synthase small chain compare
PP_5076 -5.9 -24.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_1088 -5.9 -11.9 Argininosuccinate synthase compare
PP_4680 -5.8 -19.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -5.7 -5.6 3-isopropylmalate dehydratase small subunit compare
PP_0083 -5.7 -7.8 tryptophan synthase beta chain compare
PP_0967 -5.7 -14.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4723 -5.6 -15.8 Carbamoyl-phosphate synthase large chain compare
PP_1988 -5.6 -11.9 3-isopropylmalate dehydrogenase compare
PP_4678 -5.5 -19.5 Ketol-acid reductoisomerase compare
PP_5185 -5.5 -7.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5097 -5.4 -18.8 homoserine O-acetyltransferase compare
PP_5303 -5.3 -7.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4679 -5.2 -10.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -5.2 -14.8 Histidinol dehydrogenase compare
PP_0293 -5.1 -4.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1995 -5.1 -11.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0422 -4.9 -8.8 Indole-3-glycerol phosphate synthase compare
PP_0184 -4.9 -8.8 Argininosuccinate lyase compare
PP_0965 -4.9 -13.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0417 -4.9 -21.6 Anthranilate synthase component 1 compare
PP_1231 -4.9 -9.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5098 -4.9 -10.6 methionine biosynthesis protein MetW compare
PP_3511 -4.9 -11.2 Branched-chain-amino-acid aminotransferase compare
PP_2327 -4.9 -10.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0289 -4.8 -8.5 Imidazoleglycerol-phosphate dehydratase compare
PP_3999 -4.8 -6.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0421 -4.7 -8.5 Anthranilate phosphoribosyltransferase compare
PP_5014 -4.7 -6.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4890 -4.5 -8.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_0292 -4.5 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2001 -4.3 -9.4 O-succinylhomoserine sulfhydrylase compare
PP_5346 -4.3 -13.2 pyruvate carboxylase subunit B compare
PP_2371 -4.3 -8.4 Sulphite reductase hemoprotein, beta subunit compare
PP_5047 -4.3 -8.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5347 -4.1 -15.2 pyruvate carboxylase subunit A compare
PP_5128 -4.1 -9.4 Dihydroxy-acid dehydratase compare
PP_1589 -4.1 -12.8 uridylyltransferase compare
PP_5015 -4.1 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1654 -4.0 -6.1 cysteine synthase B compare
PP_5289 -3.9 -5.7 Acetylglutamate kinase compare
PP_5348 -3.8 -12.4 Transcriptional regulator, LysR family compare
PP_1985 -3.8 -6.9 3-isopropylmalate dehydratase large subunit compare
PP_0339 -3.6 -3.5 Pyruvate dehydrogenase E1 component compare
PP_2370 -3.6 -3.6 conserved protein of unknown function compare
PP_4696 -3.6 -8.7 Nitrogen regulation protein NR(I) compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_5095 -3.4 -2.3 pyrroline-5-carboxylate reductase compare
PP_0691 -3.2 -5.2 Glutamate 5-kinase compare
PP_2328 -3.2 -8.9 Phosphoadenosine phosphosulfate reductase compare
PP_4700 -3.1 -4.2 pantothenate synthetase compare
PP_0291 -2.8 -3.6 conserved protein of unknown function compare
PP_1025 -2.8 -8.9 2-isopropylmalate synthase compare
PP_4364 -2.4 -5.2 putative Anti-sigma F factor antagonist compare
PP_3144 -2.3 -9.8 L-serine dehydratase conserved
PP_2088 -2.2 -7.4 RNA polymerase sigma factor SigX compare
PP_0362 -2.1 -13.6 Biotin synthase compare
PP_1022 -2.0 -5.9 glucose 6-phosphate-1-dehydrogenase compare
PP_4480 -2.0 -11.1 arginine N-succinyltransferase, subunit alpha compare
PP_1912 -1.9 -7.6 Phosphate acyltransferase compare
PP_4943 -1.9 -3.3 putative Glycosyl transferase compare
PP_1233 -1.9 -5.2 sulfurtransferase compare
PP_3143 -1.9 -4.2 Transcriptional regulator, LysR family compare
PP_1664 -1.8 -5.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1215 -1.7 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1217 -1.7 -4.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1216 -1.6 -3.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4964 -1.5 -3.3 D-erythrose 4-phosphate dehydrogenase compare
PP_3790 -1.5 -10.3 diaminopimelate epimerase compare
PP_2168 -1.5 -9.6 Transaldolase compare
PP_4895 -1.5 -3.6 tRNA dimethylallyltransferase compare
PP_5104 -1.5 -7.7 thiazole synthase compare
PP_3649 -1.5 -3.6 Transcriptional regulator, GntR family compare
PP_4782 -1.5 -5.7 Phosphomethylpyrimidine kinase compare
PP_0735 -1.4 -2.7 molybdopterin-synthase adenylyltransferase compare
PP_3484 -1.4 -5.0 Response regulator receiver protein compare
PP_4984 -1.4 -9.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0127 -1.4 -5.7 Thiol:disulfide interchange protein compare
PP_2414 -1.4 -1.9 conserved exported protein of unknown function compare
PP_1362 -1.3 -3.4 pyruvate kinase II compare
PP_2390 -1.3 -8.4 Transcriptional regulator, LysR family compare
PP_0363 -1.3 -9.7 8-amino-7-oxononanoate synthase compare
PP_2378 -1.3 -2.3 Fe/S biogenesis protein NfuA compare
PP_0364 -1.3 -7.7 pimeloyl-[acp] methyl ester esterase compare
PP_5331 -1.3 -2.7 Long-chain acyl-CoA thioester hydrolase compare
PP_2388 -1.3 -5.0 Transporter, LysE family compare
PP_0365 -1.3 -7.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5350 -1.3 -4.1 Transcriptional regulator, RpiR family compare
PP_0809 -1.2 -9.2 disulfide bond formation protein B compare
PP_0164 -1.2 -5.8 conserved protein of unknown function compare
PP_4004 -1.2 -3.2 DNA translocase FtsK compare
PP_0366 -1.2 -5.1 dethiobiotin synthetase compare
PP_4922 -1.2 -8.2 Phosphomethylpyrimidine synthase compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0393 -1.1 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5230 -1.1 -3.4 Tyrosine recombinase XerC compare
PP_1366 -1.1 -1.6 Transcriptional regulator MvaT, P16 subunit compare
PP_0846 -1.1 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_4699 -1.0 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2302 -1.0 -5.1 DNA-binding, ATP-dependent protease compare
PP_1348 -1.0 -4.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4120 -1.0 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_3821 -1.0 -6.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3105 -1.0 -2.1 conserved membrane protein of unknown function compare
PP_5328 -1.0 -2.3 putative phosphate transport system permease protein compare
PP_1426 -0.9 -7.4 L-aspartate oxidase compare
PP_5227 -0.9 -4.7 diaminopimelate decarboxylase compare
PP_4098 -0.9 -1.4 UvrABC system protein C compare
PP_1734 -0.9 -2.1 Probable septum site-determining protein MinC compare
PP_1468 -0.9 -1.9 Tyrosine recombinase XerD compare
PP_1214 -0.9 -2.0 putative transcriptional regulatory protein compare
PP_5203 -0.9 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_4695 -0.9 -5.8 Sensory box histidine kinase compare
PP_0435 -0.8 -7.0 Peptidase, M23/M37 family compare
PP_2794 -0.8 -1.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4693 -0.8 -2.9 RNA polymerase-binding transcription factor DksA compare
PP_3378 -0.8 -2.0 putative 2-ketogluconokinase compare
PP_0512 -0.8 -2.6 hypothetical protein compare
PP_1128 -0.7 -1.7 OmpA family protein compare
PP_0440 -0.7 -1.3 Elongation factor Tu-A compare
PP_4944 -0.7 -2.2 Carbamoyltransferase compare
PP_5216 -0.7 -1.8 exopolyphosphatase compare
PP_4121 -0.7 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PP_3102 -0.7 -3.1 conserved protein of unknown function compare
PP_0556 -0.7 -3.1 Acetoin catabolism protein compare
PP_4129 -0.7 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2402 -0.7 -1.7 putative Sensor histidine kinase compare
PP_1493 -0.7 -1.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4546 -0.7 -2.4 ATP-dependent helicase HrpA compare
PP_1826 -0.7 -1.9 Hydrolase, isochorismatase family compare
PP_4058 -0.7 -5.2 1,4-alpha-glucan branching enzyme compare
PP_3243 -0.6 -1.7 Acetyltransferase, GNAT family compare
PP_4124 -0.6 -2.4 NADH-quinone oxidoreductase subunit G compare
PP_3789 -0.6 -3.2 putative Efflux transporter compare
PP_2307 -0.6 -1.7 conserved protein of unknown function compare
PP_5507 -0.6 -2.1 protein of unknown function compare
PP_5313 -0.6 -1.7 DNA-binding protein HU-alpha compare
PP_3248 -0.6 -1.2 Dyp-type peroxidase family protein compare
PP_1224 -0.6 -3.8 periplasmic subunit of the TolQRA transport system compare
PP_0832 -0.6 -2.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4481 -0.6 -2.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1137 -0.6 -3.7 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_4379 -0.6 -3.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1609 -0.6 -2.5 conserved protein of unknown function compare
PP_3286 -0.6 -3.1 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1553 -0.6 -1.3 conserved protein of unknown function compare
PP_4253 -0.6 -2.1 cytochrome c oxidase subunit, cbb3-type compare
PP_1322 -0.6 -1.7 putative Lipoprotein compare
PP_2976 -0.6 -1.6 putative transposase compare
PP_2324 -0.6 -4.1 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2631 -0.6 -1.3 putative cellulose biosynthesis, BcsF/YhjT compare
PP_4377 -0.6 -3.2 putative Flagellin FlaG compare
PP_4018 -0.6 -2.0 Acetyltransferase, GNAT family compare
PP_1387 -0.6 -3.0 Probable HTH-type transcriptional regulator TtgR compare
PP_2345 -0.6 -1.4 conserved exported protein of unknown function compare
PP_0063 -0.5 -1.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4940 -0.5 -3.3 Putative glycosyltransferase compare
PP_4126 -0.5 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_1764 -0.5 -3.0 Phosphoglycolate phosphatase 2 compare
PP_2348 -0.5 -2.9 Sensor histidine kinase compare
PP_4101 -0.5 -2.4 Acetyltransferase, GNAT family compare
PP_0607 -0.5 -2.1 putative Type IV pili biogenesis protein FimT compare
PP_1637 -0.5 -2.0 Transcriptional regulator, LysR family compare
PP_2903 -0.5 -1.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2029 -0.5 -1.7 von Willebrand factor type A domain protein compare
PP_5528 -0.5 -1.3 conserved protein of unknown function compare
PP_4684 -0.5 -3.0 conserved protein of unknown function with kinase-like domain compare
PP_1770 -0.5 -1.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1681 -0.5 -3.9 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_0695 -0.5 -3.2 conserved protein of unknown function compare
PP_1036 -0.5 -2.1 membrane-bound lytic murein transglycosylase F compare
PP_1028 -0.5 -1.9 Transcriptional regulator, LysR family compare
PP_3245 -0.5 -1.1 conserved protein of unknown function compare
PP_5233 -0.5 -3.1 ammonium transporter AmtB compare
PP_1326 -0.5 -1.4 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2907 -0.5 -1.6 DNA-binding response regulator compare
PP_2929 -0.5 -3.2 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0833 -0.5 -0.9 queuine tRNA-ribosyltransferase compare
PP_5327 -0.5 -1.1 putative phosphate ABC transporter, permease subunit compare
PP_4776 -0.5 -3.2 AsnC family transcriptional regulator compare
PP_0434 -0.5 -2.8 Anhydro-N-acetylmuramic acid kinase compare
PP_2580 -0.5 -2.2 conserved protein of unknown function compare
PP_1864 -0.5 -1.7 conserved protein of unknown function compare
PP_3776 -0.5 -2.7 putative permease (RarD protein) compare
PP_0979 -0.5 -1.9 DNA polymerase III subunit chi compare
PP_1304 -0.5 -3.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3508 -0.5 -1.8 Protein CobW compare
PP_3715 -0.5 -2.1 Muconate cycloisomerase 1 compare
PP_1122 -0.4 -1.4 OmpA family protein compare
PP_5236 -0.4 -3.2 conserved protein of unknown function compare
PP_0627 -0.4 -1.2 conserved protein of unknown function compare
PP_4966 -0.4 -1.8 transcriptional regulator of methionine metabolism compare
PP_1151 -0.4 -2.5 conserved protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Serine in Pseudomonas putida KT2440

For nitrogen source L-Serine across organisms