Experiment set27IT072 for Pseudomonas putida KT2440

Compare to:

L-Serine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.2 -5.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -7.1 -8.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5048 -6.9 -8.2 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0422 -6.6 -7.8 Indole-3-glycerol phosphate synthase compare
PP_5076 -6.3 -23.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_4724 -6.3 -7.5 Carbamoyl-phosphate synthase small chain compare
PP_5075 -6.1 -15.8 glutamate synthase (NADPH) beta subunit compare
PP_0082 -6.0 -7.1 tryptophan synthase alpha chain compare
PP_0083 -5.9 -7.0 tryptophan synthase beta chain compare
PP_5014 -5.9 -5.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_4723 -5.6 -15.9 Carbamoyl-phosphate synthase large chain compare
PP_4680 -5.6 -19.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -5.6 -19.5 Ketol-acid reductoisomerase compare
PP_0966 -5.6 -15.3 Histidinol dehydrogenase compare
PP_1995 -5.5 -12.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0184 -5.4 -7.4 Argininosuccinate lyase compare
PP_0420 -5.3 -15.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4679 -5.3 -10.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5098 -5.2 -12.1 methionine biosynthesis protein MetW compare
PP_5047 -5.1 -11.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1985 -5.1 -8.2 3-isopropylmalate dehydratase large subunit compare
PP_0967 -5.0 -11.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4890 -5.0 -8.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_2328 -5.0 -7.6 Phosphoadenosine phosphosulfate reductase compare
PP_1986 -5.0 -5.0 3-isopropylmalate dehydratase small subunit compare
PP_2327 -5.0 -10.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1988 -5.0 -12.6 3-isopropylmalate dehydrogenase compare
PP_1088 -4.9 -14.9 Argininosuccinate synthase compare
PP_5097 -4.9 -19.2 homoserine O-acetyltransferase compare
PP_0787 -4.8 -5.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0417 -4.8 -20.2 Anthranilate synthase component 1 compare
PP_5015 -4.7 -7.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1079 -4.7 -8.3 Ornithine carbamoyltransferase compare
PP_0292 -4.6 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3511 -4.6 -10.7 Branched-chain-amino-acid aminotransferase compare
PP_1231 -4.5 -7.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0421 -4.5 -8.9 Anthranilate phosphoribosyltransferase compare
PP_3999 -4.5 -8.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2001 -4.5 -9.8 O-succinylhomoserine sulfhydrylase compare
PP_5185 -4.3 -9.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0289 -4.2 -8.0 Imidazoleglycerol-phosphate dehydratase compare
PP_2371 -4.2 -10.0 Sulphite reductase hemoprotein, beta subunit compare
PP_5346 -4.2 -12.7 pyruvate carboxylase subunit B compare
PP_5348 -4.0 -11.0 Transcriptional regulator, LysR family compare
PP_5128 -3.9 -7.9 Dihydroxy-acid dehydratase compare
PP_0965 -3.8 -12.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1589 -3.8 -12.7 uridylyltransferase compare
PP_0691 -3.8 -5.8 Glutamate 5-kinase compare
PP_5289 -3.7 -5.7 Acetylglutamate kinase compare
PP_4700 -3.7 -3.6 pantothenate synthetase compare
PP_0339 -3.7 -3.6 Pyruvate dehydrogenase E1 component compare
PP_5303 -3.6 -6.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5347 -3.5 -15.8 pyruvate carboxylase subunit A compare
PP_5095 -3.5 -2.4 pyrroline-5-carboxylate reductase compare
PP_2370 -3.5 -3.4 conserved protein of unknown function compare
PP_1654 -3.4 -6.7 cysteine synthase B compare
PP_1025 -3.0 -10.0 2-isopropylmalate synthase compare
PP_4364 -3.0 -6.4 putative Anti-sigma F factor antagonist compare
PP_4999 -2.9 -2.7 dihydroorotase-like protein compare
PP_0127 -2.8 -6.9 Thiol:disulfide interchange protein compare
PP_4943 -2.8 -3.7 putative Glycosyl transferase compare
PP_2088 -2.7 -5.9 RNA polymerase sigma factor SigX compare
PP_1217 -2.5 -6.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3144 -2.3 -9.6 L-serine dehydratase conserved
PP_0362 -2.1 -13.2 Biotin synthase compare
PP_2378 -2.1 -3.4 Fe/S biogenesis protein NfuA compare
PP_0164 -2.1 -7.7 conserved protein of unknown function compare
PP_1912 -2.0 -7.9 Phosphate acyltransferase compare
PP_4696 -2.0 -6.3 Nitrogen regulation protein NR(I) compare
PP_2414 -2.0 -1.6 conserved exported protein of unknown function compare
PP_1022 -2.0 -5.8 glucose 6-phosphate-1-dehydrogenase compare
PP_3143 -1.8 -4.6 Transcriptional regulator, LysR family compare
PP_3790 -1.8 -11.2 diaminopimelate epimerase compare
PP_2168 -1.8 -10.8 Transaldolase compare
PP_2388 -1.7 -4.6 Transporter, LysE family compare
PP_0291 -1.7 -1.8 conserved protein of unknown function compare
PP_4480 -1.7 -9.6 arginine N-succinyltransferase, subunit alpha compare
PP_2390 -1.7 -9.6 Transcriptional regulator, LysR family compare
PP_4895 -1.6 -3.7 tRNA dimethylallyltransferase compare
PP_4782 -1.6 -5.5 Phosphomethylpyrimidine kinase compare
PP_1233 -1.6 -5.4 sulfurtransferase compare
PP_4693 -1.5 -6.0 RNA polymerase-binding transcription factor DksA compare
PP_3484 -1.5 -3.4 Response regulator receiver protein compare
PP_1362 -1.4 -3.4 pyruvate kinase II compare
PP_1664 -1.4 -4.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_0809 -1.4 -9.3 disulfide bond formation protein B compare
PP_4984 -1.4 -10.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5104 -1.3 -6.1 thiazole synthase compare
PP_3821 -1.3 -7.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0363 -1.3 -10.3 8-amino-7-oxononanoate synthase compare
PP_0364 -1.3 -7.7 pimeloyl-[acp] methyl ester esterase compare
PP_4122 -1.3 -2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0365 -1.2 -8.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1348 -1.2 -5.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0735 -1.2 -2.8 molybdopterin-synthase adenylyltransferase compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5331 -1.1 -3.3 Long-chain acyl-CoA thioester hydrolase compare
PP_4004 -1.1 -3.5 DNA translocase FtsK compare
PP_4964 -1.1 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_1994 -1.1 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_4922 -1.1 -8.4 Phosphomethylpyrimidine synthase compare
PP_5350 -1.1 -3.1 Transcriptional regulator, RpiR family compare
PP_1493 -1.0 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0833 -1.0 -2.3 queuine tRNA-ribosyltransferase compare
PP_5227 -1.0 -5.1 diaminopimelate decarboxylase compare
PP_1468 -1.0 -2.2 Tyrosine recombinase XerD compare
PP_2302 -1.0 -5.0 DNA-binding, ATP-dependent protease compare
PP_4131 -1.0 -4.5 NADH-quinone oxidoreductase subunit N compare
PP_4058 -0.9 -6.9 1,4-alpha-glucan branching enzyme compare
PP_2307 -0.9 -1.8 conserved protein of unknown function compare
PP_4940 -0.9 -5.2 Putative glycosyltransferase compare
PP_2044 -0.9 -2.8 conserved inner membrane protein of unknown function compare
PP_3105 -0.9 -2.3 conserved membrane protein of unknown function compare
PP_4130 -0.9 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0366 -0.8 -4.9 dethiobiotin synthetase compare
PP_1733 -0.8 -1.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_5203 -0.8 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_1426 -0.8 -6.5 L-aspartate oxidase compare
PP_4695 -0.8 -5.9 Sensory box histidine kinase compare
PP_0393 -0.8 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3376 -0.8 -3.6 putative phosphonate dehydrogenase compare
PP_1216 -0.8 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4481 -0.8 -3.7 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_0065 -0.8 -2.5 NAD-binding component of TrK potassium transporter compare
PP_3378 -0.7 -1.6 putative 2-ketogluconokinase compare
PP_2345 -0.7 -2.0 conserved exported protein of unknown function compare
PP_0435 -0.7 -6.3 Peptidase, M23/M37 family compare
PP_0914 -0.7 -5.6 GGDEF domain protein compare
PP_5328 -0.7 -1.9 putative phosphate transport system permease protein compare
PP_5230 -0.7 -2.6 Tyrosine recombinase XerC compare
PP_5604 -0.7 -1.6 putative subtilisin-like serine protease compare
PP_1142 -0.7 -1.4 conserved protein of unknown function compare
PP_0630 -0.7 -1.3 DNA gyrase inhibitor YacG compare
PP_2145 -0.7 -3.7 beta-N-acetylglucosaminidase compare
PP_1366 -0.7 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_3946 -0.7 -1.3 HTH-type transcriptional repressor NicR compare
PP_2402 -0.7 -1.5 putative Sensor histidine kinase compare
PP_4546 -0.7 -2.4 ATP-dependent helicase HrpA compare
PP_1224 -0.7 -4.0 periplasmic subunit of the TolQRA transport system compare
PP_5507 -0.7 -1.9 protein of unknown function compare
PP_5324 -0.7 -1.8 Response regulator compare
PP_3789 -0.6 -3.0 putative Efflux transporter compare
PP_1629 -0.6 -2.5 Protein RecA compare
PP_3064 -0.6 -2.7 Phage tail protein compare
PP_2253 -0.6 -2.1 Transcriptional regulator, GntR family compare
PP_1679 -0.6 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3286 -0.6 -3.8 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1568 -0.6 -1.2 conserved protein of unknown function compare
PP_4121 -0.6 -2.9 NADH-quinone oxidoreductase subunit C/D compare
PP_4699 -0.6 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4684 -0.6 -4.0 conserved protein of unknown function with kinase-like domain compare
PP_2152 -0.6 -2.4 glycerophosphoryl diester phosphodiesterase compare
PP_2681 -0.6 -1.5 coenzyme PQQ synthesis protein D compare
PP_1137 -0.6 -4.0 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_5028 -0.6 -2.2 proline iminopeptidase compare
PP_5748 -0.6 -1.1 cytochrome c heme lyase subunit compare
PP_3892 -0.6 -1.6 conserved protein of unknown function compare
PP_5233 -0.6 -3.9 ammonium transporter AmtB compare
PP_1789 -0.6 -2.6 Hydrolase, haloacid dehalogenase-like family compare
PP_0963 -0.6 -1.7 putative BolA family protein compare
PP_5338 -0.6 -1.2 aspartate ammonia-lyase compare
PP_1764 -0.6 -3.4 Phosphoglycolate phosphatase 2 compare
PP_0834 -0.6 -1.7 Sec translocation complex subunit YajC compare
PP_4581 -0.6 -1.6 putative amidotransferase compare
PP_0378 -0.6 -3.4 Pyrroloquinoline-quinone synthase compare
PP_1734 -0.6 -1.4 Probable septum site-determining protein MinC compare
PP_4836 -0.6 -2.7 conserved exported protein of unknown function compare
PP_0379 -0.6 -3.4 Coenzyme PQQ synthesis protein B compare
PP_0261 -0.6 -3.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_3506 -0.6 -1.9 Magnesium chelatase, subunit ChII compare
PP_5456 -0.5 -1.4 conserved protein of unknown function compare
PP_0593 -0.5 -0.9 putative ribosome-binding factor compare
PP_2929 -0.5 -3.7 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3906 -0.5 -2.0 conserved protein of unknown function compare
PP_2580 -0.5 -1.9 conserved protein of unknown function compare
PP_5216 -0.5 -1.6 exopolyphosphatase compare
PP_1300 -0.5 -1.7 putative amino acid ABC transporter - ATP-binding subunit compare
PP_5621 -0.5 -1.4 protein of unknown function compare
PP_0003 -0.5 -1.8 16S RNA methyltransferase compare
PP_0694 -0.5 -3.0 conserved protein of unknown function compare
PP_2324 -0.5 -3.0 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1214 -0.5 -1.3 putative transcriptional regulatory protein compare
PP_5717 -0.5 -1.9 conserved protein of unknown function compare
PP_5557 -0.5 -2.1 protein of unknown function compare
PP_3788 -0.5 -3.9 putative Non-ribosomal peptide synthetase compare
PP_1826 -0.5 -1.7 Hydrolase, isochorismatase family compare
PP_0209 -0.5 -1.9 ATP-binding taurine transporter subunit compare
PP_4179 -0.5 -3.7 Chaperone protein HtpG compare
PP_1404 -0.5 -1.6 conserved protein of unknown function compare
PP_2306 -0.5 -0.9 conserved exported protein of unknown function compare
PP_2322 -0.5 -2.3 Major outer membrane lipoprotein compare
PP_0945 -0.5 -2.3 conserved protein of unknown function compare
PP_1011 -0.5 -3.7 glucokinase compare
PP_3102 -0.5 -1.6 conserved protein of unknown function compare
PP_1672 -0.5 -2.5 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4120 -0.5 -1.6 NADH-quinone oxidoreductase subunit B compare
PP_5514 -0.5 -1.8 conserved protein of unknown function compare
PP_1681 -0.5 -3.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_t10 -0.5 -1.0 tRNA-Pro compare
PP_5313 -0.5 -1.1 DNA-binding protein HU-alpha compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Serine in Pseudomonas putida KT2440

For nitrogen source L-Serine across organisms