Experiment set27IT070 for Pseudomonas putida KT2440

Compare to:

L-Threonine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0082 -5.6 -7.7 tryptophan synthase alpha chain compare
PP_1988 -5.4 -10.4 3-isopropylmalate dehydrogenase compare
PP_0290 -5.3 -11.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0083 -4.9 -10.0 tryptophan synthase beta chain compare
PP_1986 -4.9 -5.8 3-isopropylmalate dehydratase small subunit compare
PP_2168 -4.8 -13.1 Transaldolase compare
PP_5075 -4.5 -17.6 glutamate synthase (NADPH) beta subunit compare
PP_5076 -4.4 -19.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_4058 -4.2 -15.7 1,4-alpha-glucan branching enzyme compare
PP_1985 -4.1 -7.9 3-isopropylmalate dehydratase large subunit compare
PP_0289 -4.1 -9.1 Imidazoleglycerol-phosphate dehydratase compare
PP_3511 -4.1 -12.6 Branched-chain-amino-acid aminotransferase compare
PP_0184 -3.9 -9.4 Argininosuccinate lyase compare
PP_4678 -3.9 -16.5 Ketol-acid reductoisomerase compare
PP_1995 -3.9 -10.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1079 -3.8 -7.5 Ornithine carbamoyltransferase compare
PP_0321 -3.8 -11.2 low specificity L-threonine aldolase conserved
PP_4724 -3.8 -8.1 Carbamoyl-phosphate synthase small chain compare
PP_0422 -3.8 -8.8 Indole-3-glycerol phosphate synthase compare
PP_1088 -3.8 -13.5 Argininosuccinate synthase compare
PP_4723 -3.8 -16.7 Carbamoyl-phosphate synthase large chain compare
PP_4364 -3.7 -6.7 putative Anti-sigma F factor antagonist compare
PP_0966 -3.7 -14.8 Histidinol dehydrogenase compare
PP_2088 -3.7 -6.0 RNA polymerase sigma factor SigX compare
PP_5048 -3.7 -9.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0967 -3.6 -12.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5289 -3.6 -4.6 Acetylglutamate kinase compare
PP_0421 -3.5 -7.9 Anthranilate phosphoribosyltransferase compare
PP_0293 -3.4 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5047 -3.4 -7.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5128 -3.4 -8.9 Dihydroxy-acid dehydratase compare
PP_0989 -3.1 -3.8 glycine cleavage system H protein 1 compare
PP_0417 -3.1 -18.0 Anthranilate synthase component 1 compare
PP_4890 -3.1 -8.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_4679 -3.1 -8.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4680 -3.0 -17.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0420 -3.0 -14.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5185 -3.0 -7.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2378 -2.9 -2.8 Fe/S biogenesis protein NfuA compare
PP_4999 -2.7 -2.6 dihydroorotase-like protein compare
PP_0292 -2.6 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0986 -2.6 -8.6 aminomethyltransferase conserved
PP_2302 -2.6 -9.2 DNA-binding, ATP-dependent protease compare
PP_1589 -2.5 -11.4 uridylyltransferase compare
PP_0965 -2.4 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4696 -2.4 -7.1 Nitrogen regulation protein NR(I) compare
PP_5015 -2.4 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5058 -2.3 -5.9 Carboxy-terminal-processing protease compare
PP_4004 -2.2 -4.1 DNA translocase FtsK compare
PP_0997 -2.2 -9.4 Sigma-54 dependent transcriptional regulator/sensory box protein conserved
PP_0988 -2.1 -10.2 glycine dehydrogenase conserved
PP_5014 -2.1 -3.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_0914 -2.1 -11.3 GGDEF domain protein compare
PP_4693 -2.0 -5.3 RNA polymerase-binding transcription factor DksA compare
PP_1231 -2.0 -8.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1217 -2.0 -5.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1493 -1.9 -3.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0339 -1.8 -5.0 Pyruvate dehydrogenase E1 component compare
PP_2328 -1.8 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_1654 -1.8 -5.2 cysteine synthase B compare
PP_3649 -1.8 -3.9 Transcriptional regulator, GntR family compare
PP_4098 -1.8 -2.3 UvrABC system protein C compare
PP_0833 -1.8 -3.0 queuine tRNA-ribosyltransferase compare
PP_0787 -1.7 -5.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5227 -1.7 -7.4 diaminopimelate decarboxylase compare
PP_1198 -1.6 -3.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2414 -1.6 -1.5 conserved exported protein of unknown function compare
PP_1025 -1.6 -9.2 2-isopropylmalate synthase compare
PP_0001 -1.5 -1.9 probable chromosome-partitioning protein compare
PP_0164 -1.4 -6.3 conserved protein of unknown function compare
PP_5233 -1.4 -7.6 ammonium transporter AmtB conserved
PP_3376 -1.4 -6.4 putative phosphonate dehydrogenase compare
PP_4060 -1.4 -10.4 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_5095 -1.3 -1.6 pyrroline-5-carboxylate reductase compare
PP_0691 -1.3 -2.9 Glutamate 5-kinase compare
PP_2433 -1.2 -3.1 conserved protein of unknown function compare
PP_5347 -1.2 -8.8 pyruvate carboxylase subunit A compare
PP_0725 -1.2 -4.3 conserved hypothetical TPR repeat protein compare
PP_4828 -1.2 -1.6 Precorrin-8X methylmutase compare
PP_2087 -1.1 -3.2 CmpX protein compare
PP_5104 -1.1 -6.6 thiazole synthase compare
PP_4799 -1.1 -0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4910 -1.1 -1.6 conserved protein of unknown function compare
PP_2370 -1.1 -3.5 conserved protein of unknown function compare
PP_1656 -1.1 -4.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_5098 -1.0 -6.7 methionine biosynthesis protein MetW compare
PP_4700 -1.0 -2.5 pantothenate synthetase compare
PP_1468 -1.0 -2.4 Tyrosine recombinase XerD compare
PP_0002 -1.0 -4.9 probable chromosome partition protein compare
PP_0291 -1.0 -1.5 conserved protein of unknown function compare
PP_5097 -1.0 -6.9 homoserine O-acetyltransferase compare
PP_5346 -1.0 -6.4 pyruvate carboxylase subunit B compare
PP_5203 -0.9 -5.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_1233 -0.9 -3.6 sulfurtransferase compare
PP_0846 -0.9 -1.6 DnaK-like molecular chaperone specific for IscU compare
PP_5475 -0.9 -1.9 conserved protein of unknown function compare
PP_3505 -0.9 -2.3 conserved protein of unknown function compare
PP_4247 -0.8 -1.4 Exonuclease compare
PP_5652 -0.8 -2.4 conserved protein of unknown function, phage origin compare
PP_0735 -0.8 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_1734 -0.8 -1.8 Probable septum site-determining protein MinC compare
PP_2001 -0.8 -5.6 O-succinylhomoserine sulfhydrylase compare
PP_3312 -0.8 -2.3 putative Heat shock protein compare
PP_2327 -0.8 -3.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3999 -0.8 -4.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1824 -0.8 -1.9 Smr domain protein compare
PP_0393 -0.8 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0362 -0.7 -5.9 Biotin synthase compare
PP_5352 -0.7 -5.1 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_3971 -0.7 -2.1 conserved protein of unknown function compare
PP_4695 -0.7 -5.3 Sensory box histidine kinase compare
PP_2416 -0.7 -2.6 putative Iron ABC transporter, ATP-binding protein compare
PP_2371 -0.7 -3.2 Sulphite reductase hemoprotein, beta subunit compare
PP_5036 -0.7 -4.2 probable formiminoglutamate deiminase compare
PP_5313 -0.7 -1.9 DNA-binding protein HU-alpha compare
PP_3318 -0.7 -2.0 conserved protein of unknown function compare
PP_0987 -0.7 -3.4 L-serine dehydratase compare
PP_4947 -0.7 -5.7 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_1733 -0.7 -1.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_3377 -0.6 -5.3 2-ketogluconate transporter, putative compare
PP_4989 -0.6 -2.1 Protein PilJ compare
PP_0195 -0.6 -2.3 conserved protein of unknown function compare
PP_4338 -0.6 -4.6 Chemotaxis histidine kinase CheA compare
PP_4340 -0.6 -2.5 response regulator for chemotactic signal transduction compare
PP_4782 -0.6 -2.8 Phosphomethylpyrimidine kinase compare
PP_2348 -0.6 -2.8 Sensor histidine kinase compare
PP_5453 -0.6 -1.4 conserved protein of unknown function compare
PP_3481 -0.6 -1.5 conserved exported protein of unknown function compare
PP_3036 -0.6 -2.4 conserved protein of unknown function compare
PP_1142 -0.6 -1.1 conserved protein of unknown function compare
PP_5633 -0.6 -2.6 conserved protein of unknown function compare
PP_1128 -0.6 -1.6 OmpA family protein compare
PP_2714 -0.6 -3.3 Sensor histidine kinase compare
PP_1293 -0.6 -1.0 molybdopterin synthase small subunit compare
PP_1216 -0.6 -0.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4895 -0.6 -1.6 tRNA dimethylallyltransferase compare
PP_0435 -0.6 -4.4 Peptidase, M23/M37 family compare
PP_3760 -0.6 -2.9 putative methyltransferase compare
PP_3904 -0.6 -2.5 conserved protein of unknown function compare
PP_5465 -0.6 -3.6 conserved protein of unknown function compare
PP_5556 -0.6 -1.7 putative bacteriophage lysis protein compare
PP_2031 -0.6 -1.4 conserved protein of unknown function compare
PP_0643 -0.5 -2.0 protein of unknown function compare
PP_4804 -0.5 -1.4 RlpA-like lipoprotein compare
PP_5338 -0.5 -1.1 aspartate ammonia-lyase compare
PP_5348 -0.5 -3.5 Transcriptional regulator, LysR family compare
PP_4993 -0.5 -1.7 Glutathione synthetase compare
PP_1215 -0.5 -0.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_5507 -0.5 -1.2 protein of unknown function compare
PP_4136 -0.5 -1.2 Transcriptional regulator, LuxR family compare
PP_4964 -0.5 -1.2 D-erythrose 4-phosphate dehydrogenase compare
PP_2326 -0.5 -3.2 Universal stress protein compare
PP_5216 -0.5 -1.1 exopolyphosphatase compare
PP_4897 -0.5 -1.9 N-acetylmuramoyl-L-alanine amidase compare
PP_2681 -0.5 -1.6 coenzyme PQQ synthesis protein D compare
PP_3239 -0.5 -1.6 putative cointegrate resolution protein T Tn4652 compare
PP_1096 -0.5 -1.5 putative electron transport complex protein compare
PP_0087 -0.5 -1.9 conserved exported protein of unknown function compare
PP_1713 -0.5 -1.7 Transcriptional regulator PcaQ compare
PP_1099 -0.5 -1.2 Cold shock protein CapB compare
PP_0534 -0.5 -2.8 putative Transcriptional regulator PfeR compare
PP_5230 -0.5 -1.6 Tyrosine recombinase XerC compare
PP_5328 -0.5 -1.4 putative phosphate transport system permease protein compare
PP_5090 -0.5 -1.5 putative cell division protein compare
PP_2147 -0.5 -1.6 conserved exported protein of unknown function compare
PP_2880 -0.5 -1.4 Transcriptional regulator, TetR family compare
PP_1348 -0.5 -2.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4685 -0.5 -2.7 conserved protein of unknown function compare
PP_3378 -0.5 -1.4 putative 2-ketogluconokinase compare
PP_2044 -0.5 -1.1 conserved inner membrane protein of unknown function compare
PP_t49 -0.5 -1.8 tRNA-Met compare
PP_0065 -0.5 -1.6 NAD-binding component of TrK potassium transporter compare
PP_0703 -0.5 -1.9 putative Transmembrane sensor compare
PP_3094 -0.5 -1.6 conserved exported protein of unknown function compare
PP_4952 -0.5 -0.8 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0123 -0.5 -2.7 DNA polymerase I, 5 compare
PP_0414 -0.5 -2.7 Polyamine ABC transporter, permease protein compare
PP_3603 -0.5 -2.9 Transcriptional regulator, GntR family compare
PP_4739 -0.5 -2.0 conserved protein of unknown function compare
PP_4814 -0.5 -1.5 ATP-dependent protease La domain protein compare
PP_2336 -0.5 -1.8 aconitate hydratase 1 compare
PP_3407 -0.5 -1.4 conserved protein of unknown function compare
PP_4101 -0.5 -2.5 Acetyltransferase, GNAT family compare
PP_1455 -0.5 -1.3 conserved protein of unknown function compare
PP_4645 -0.5 -1.5 Large-conductance mechanosensitive channel compare
PP_0757 -0.5 -1.9 conserved protein of unknown function compare
PP_1860 -0.5 -2.7 Organic hydroperoxide resistance transcriptional regulator compare
PP_1294 -0.4 -1.4 molybdopterin synthase large subunit compare
PP_2868 -0.4 -2.3 Transcriptional regulator, Cro/CI family compare
PP_4143 -0.4 -1.8 conserved protein of unknown function compare
PP_2568 -0.4 -0.9 Ring-cleaving dioxygenase compare
PP_4286 -0.4 -2.6 allantoinase compare
PP_2337 -0.4 -1.3 aconitate isomerase compare
PP_3810 -0.4 -0.9 conserved protein of unknown function compare
PP_2747 -0.4 -1.4 conserved protein of unknown function compare
PP_3726 -0.4 -1.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_2217 -0.4 -1.4 enoyl-CoA hydratase compare
PP_0048 -0.4 -0.9 conserved protein of unknown function compare
PP_2204 -0.4 -2.5 copper resistance protein B compare
PP_3773 -0.4 -1.7 conserved protein of unknown function compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source L-Threonine in Pseudomonas putida KT2440

For nitrogen source L-Threonine across organisms