Experiment set27IT068 for Pseudomonas putida KT2440

Compare to:

L-Leucine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.7 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0422 -5.8 -8.0 Indole-3-glycerol phosphate synthase compare
PP_0082 -5.3 -7.3 tryptophan synthase alpha chain compare
PP_2168 -4.3 -13.4 Transaldolase compare
PP_3511 -4.3 -11.5 Branched-chain-amino-acid aminotransferase compare
PP_1088 -4.2 -13.6 Argininosuccinate synthase compare
PP_4058 -4.1 -14.7 1,4-alpha-glucan branching enzyme compare
PP_5047 -4.1 -7.8 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0290 -4.0 -7.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -3.9 -11.5 phosphoserine phosphatase compare
PP_1079 -3.9 -10.1 Ornithine carbamoyltransferase compare
PP_0083 -3.9 -9.7 tryptophan synthase beta chain compare
PP_5048 -3.9 -8.1 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4724 -3.8 -9.2 Carbamoyl-phosphate synthase small chain compare
PP_4723 -3.8 -16.3 Carbamoyl-phosphate synthase large chain compare
PP_0184 -3.8 -8.4 Argininosuccinate lyase compare
PP_0421 -3.7 -6.7 Anthranilate phosphoribosyltransferase compare
PP_1995 -3.7 -9.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4680 -3.6 -15.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0292 -3.5 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0967 -3.4 -10.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1589 -3.4 -11.5 uridylyltransferase compare
PP_0417 -3.3 -17.2 Anthranilate synthase component 1 compare
PP_4678 -3.3 -15.1 Ketol-acid reductoisomerase compare
PP_5014 -3.3 -4.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_0289 -3.3 -9.4 Imidazoleglycerol-phosphate dehydratase compare
PP_4890 -3.2 -8.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_5128 -3.0 -8.0 Dihydroxy-acid dehydratase compare
PP_0965 -3.0 -10.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -3.0 -8.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4999 -3.0 -2.0 dihydroorotase-like protein compare
PP_4364 -2.9 -7.3 putative Anti-sigma F factor antagonist compare
PP_2302 -2.9 -8.5 DNA-binding, ATP-dependent protease compare
PP_0966 -2.9 -12.8 Histidinol dehydrogenase compare
PP_0420 -2.9 -13.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4696 -2.8 -7.6 Nitrogen regulation protein NR(I) compare
PP_2088 -2.8 -4.5 RNA polymerase sigma factor SigX compare
PP_5346 -2.7 -9.0 pyruvate carboxylase subunit B compare
PP_2328 -2.7 -7.9 Phosphoadenosine phosphosulfate reductase compare
PP_0691 -2.6 -5.2 Glutamate 5-kinase compare
PP_4060 -2.5 -13.9 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_2001 -2.5 -9.6 O-succinylhomoserine sulfhydrylase compare
PP_4679 -2.5 -8.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1493 -2.5 -3.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4004 -2.5 -4.4 DNA translocase FtsK compare
PP_5289 -2.4 -3.6 Acetylglutamate kinase compare
PP_5350 -2.4 -5.2 Transcriptional regulator, RpiR family compare
PP_5347 -2.4 -11.2 pyruvate carboxylase subunit A compare
PP_5098 -2.3 -7.5 methionine biosynthesis protein MetW compare
PP_5097 -2.3 -11.1 homoserine O-acetyltransferase compare
PP_1362 -2.2 -5.5 pyruvate kinase II compare
PP_0362 -2.0 -10.6 Biotin synthase compare
PP_1022 -2.0 -5.9 glucose 6-phosphate-1-dehydrogenase compare
PP_5015 -1.9 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5155 -1.9 -3.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4814 -1.9 -4.9 ATP-dependent protease La domain protein compare
PP_1198 -1.9 -3.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5348 -1.9 -6.8 Transcriptional regulator, LysR family compare
PP_4066 -1.9 -4.3 methylglutaconyl-CoA hydratase compare
PP_0914 -1.8 -10.5 GGDEF domain protein compare
PP_1216 -1.8 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0902 -1.8 -10.9 integral membrane sensor signal transduction histidine kinase compare
PP_0901 -1.8 -7.4 DNA-binding response regulator compare
PP_5345 -1.8 -5.8 Acetyltransferase, GNAT family compare
PP_3999 -1.8 -7.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4065 -1.8 -8.5 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_2370 -1.8 -3.3 conserved protein of unknown function compare
PP_1020 -1.7 -4.0 putative glucose-6-phosphate 1-epimerase compare
PP_0164 -1.7 -6.6 conserved protein of unknown function compare
PP_3376 -1.6 -6.2 putative phosphonate dehydrogenase compare
PP_1215 -1.6 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4693 -1.6 -3.7 RNA polymerase-binding transcription factor DksA compare
PP_2433 -1.6 -1.8 conserved protein of unknown function compare
PP_2371 -1.5 -5.7 Sulphite reductase hemoprotein, beta subunit compare
PP_1233 -1.5 -3.8 sulfurtransferase compare
PP_1217 -1.5 -4.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4699 -1.5 -4.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2031 -1.5 -3.4 conserved protein of unknown function compare
PP_0127 -1.4 -6.3 Thiol:disulfide interchange protein compare
PP_1237 -1.4 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1468 -1.4 -2.9 Tyrosine recombinase XerD compare
PP_4403 -1.4 -7.6 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_4867 -1.4 -8.8 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) compare
PP_4695 -1.3 -8.7 Sensory box histidine kinase compare
PP_4864 -1.3 -9.3 High-affinity branched-chain amino acid transport ATP-binding protein BraF conserved
PP_4863 -1.3 -9.2 high-affinity branched-chain amino acid transporter, ATP-binding conserved
PP_1654 -1.3 -3.9 cysteine synthase B compare
PP_0435 -1.3 -9.4 Peptidase, M23/M37 family compare
PP_1328 -1.2 -2.1 Protein MraZ compare
PP_0735 -1.2 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_4866 -1.2 -8.5 High-affinity branched-chain amino acid transport system permease protein BraD conserved
PP_1138 -1.2 -4.5 branched chain amino acid transporter - ATP binding subunit compare
PP_0406 -1.2 -3.6 Nucleotidyltransferase family protein compare
PP_4199 -1.2 -1.5 putative Lipoprotein compare
PP_4401 -1.2 -7.0 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit conserved
PP_4400 -1.2 -5.2 Bkd operon transcriptional regulator compare
PP_2720 -1.2 -1.8 conserved protein of unknown function compare
PP_5227 -1.2 -3.8 diaminopimelate decarboxylase compare
PP_0949 -1.2 -5.0 putative ATP-binding protein UPF0042 compare
PP_4402 -1.2 -6.4 branched-chain alpha-keto acid dehydrogenase complex, beta subunit conserved
PP_4865 -1.2 -7.6 High-affinity branched-chain amino acid transport system permease protein BraE conserved
PP_5328 -1.1 -2.3 putative phosphate transport system permease protein compare
PP_4067 -1.1 -3.7 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_4631 -1.1 -4.3 conserved protein of unknown function compare
PP_5090 -1.1 -1.8 putative cell division protein compare
PP_1355 -1.1 -9.0 Muropeptide permease AmpG compare
PP_0002 -1.1 -5.4 probable chromosome partition protein compare
PP_4942 -1.0 -2.0 conserved protein of unknown function compare
PP_5104 -1.0 -6.2 thiazole synthase compare
PP_1322 -1.0 -2.4 putative Lipoprotein compare
PP_2714 -1.0 -4.1 Sensor histidine kinase compare
PP_5114 -1.0 -1.3 putative adenine methyltransferase compare
PP_4368 -1.0 -5.2 flagellar motor switch protein compare
PP_4700 -1.0 -2.4 pantothenate synthetase compare
PP_0063 -1.0 -2.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5233 -1.0 -5.9 ammonium transporter AmtB compare
PP_3821 -1.0 -6.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4910 -1.0 -2.2 conserved protein of unknown function compare
PP_1140 -1.0 -7.1 branched chain amino acid transporter - permease subunit compare
PP_5110 -1.0 -2.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2348 -1.0 -4.4 Sensor histidine kinase compare
PP_4874 -1.0 -0.9 50S ribosomal protein L9 compare
PP_0834 -0.9 -2.2 Sec translocation complex subunit YajC compare
PP_4782 -0.9 -4.6 Phosphomethylpyrimidine kinase compare
PP_0163 -0.9 -6.6 putative transcriptional regulator compare
PP_1139 -0.9 -7.4 branched chain amino acid transporter - permease subunit compare
PP_4964 -0.9 -2.1 D-erythrose 4-phosphate dehydrogenase compare
PP_2217 -0.9 -3.2 enoyl-CoA hydratase compare
PP_1137 -0.9 -5.5 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_0434 -0.9 -4.7 Anhydro-N-acetylmuramic acid kinase compare
PP_2402 -0.9 -1.9 putative Sensor histidine kinase compare
PP_2145 -0.9 -3.7 beta-N-acetylglucosaminidase compare
PP_2144 -0.9 -2.4 Transcriptional regulator, TetR family compare
PP_1348 -0.9 -4.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1764 -0.9 -3.0 Phosphoglycolate phosphatase 2 compare
PP_3398 -0.9 -2.4 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4098 -0.9 -1.3 UvrABC system protein C compare
PP_4064 -0.9 -6.7 isovaleryl-CoA dehydrogenase compare
PP_4179 -0.9 -5.9 Chaperone protein HtpG compare
PP_4505 -0.9 -4.3 Sensor histidine kinase compare
PP_0833 -0.9 -1.7 queuine tRNA-ribosyltransferase compare
PP_4895 -0.9 -2.1 tRNA dimethylallyltransferase compare
PP_5295 -0.9 -1.5 conserved protein of unknown function compare
PP_4369 -0.8 -5.8 Flagellar M-ring protein compare
PP_0789 -0.8 -3.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4966 -0.8 -2.7 transcriptional regulator of methionine metabolism compare
PP_1664 -0.8 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_4050 -0.8 -6.8 glycogen synthase compare
PP_3649 -0.8 -2.1 Transcriptional regulator, GntR family compare
PP_4952 -0.8 -1.3 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2631 -0.8 -1.4 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1800 -0.8 -5.6 Oxidoreductase Rmd compare
PP_1598 -0.8 -3.5 regulatory intramembrane protein RIP zinc protease compare
PP_4984 -0.8 -5.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1214 -0.8 -2.0 putative transcriptional regulatory protein compare
PP_5202 -0.8 -1.5 putative cell division protein compare
PP_1672 -0.8 -2.5 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0291 -0.8 -1.8 conserved protein of unknown function compare
PP_1994 -0.8 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_4358 -0.8 -4.7 flagellar synthesis, switching and energizing component compare
PP_4379 -0.8 -3.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1141 -0.7 -5.2 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_1082 -0.7 -2.2 bacterioferritin compare
PP_4902 -0.7 -1.6 Oligoribonuclease compare
PP_5217 -0.7 -6.2 Polyphosphate kinase compare
PP_0879 -0.7 -4.2 dipeptide ABC transporter - putative ATP binding subunit compare
PP_4477 -0.7 -4.5 N-succinylarginine dihydrolase compare
PP_5055 -0.7 -2.9 Sulfurtransferase compare
PP_0365 -0.7 -5.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4482 -0.7 -2.7 Transcriptional regulator, AraC family compare
PP_4994 -0.7 -3.6 conserved protein of unknown function compare
PP_1734 -0.7 -1.3 Probable septum site-determining protein MinC compare
PP_1763 -0.7 -2.5 putative oxidoreductase compare
PP_2414 -0.7 -0.7 conserved exported protein of unknown function compare
PP_0405 -0.7 -5.5 conserved protein of unknown function compare
PP_3241 -0.7 -1.2 conserved exported protein of unknown function compare
PP_4799 -0.7 -0.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3938 -0.7 -1.8 conserved protein of unknown function compare
PP_t10 -0.7 -1.2 tRNA-Pro compare
PP_0855 -0.7 -1.6 conserved protein of unknown function compare
PP_4743 -0.7 -2.6 conserved protein of unknown function compare
PP_0364 -0.6 -4.4 pimeloyl-[acp] methyl ester esterase compare
PP_2773 -0.6 -1.5 conserved protein of unknown function compare
PP_0757 -0.6 -2.1 conserved protein of unknown function compare
PP_1045 -0.6 -1.9 Type II secretion pathway protein XcpP compare
PP_3378 -0.6 -1.6 putative 2-ketogluconokinase compare
PP_5007 -0.6 -1.0 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3760 -0.6 -3.2 putative methyltransferase compare
PP_4681 -0.6 -1.6 conserved protein of unknown function compare
PP_4359 -0.6 -3.4 Flagellar protein FliL compare
PP_2029 -0.6 -1.5 von Willebrand factor type A domain protein compare
PP_2032 -0.6 -3.0 putative ATPase compare
PP_4762 -0.6 -3.5 Acyl-CoA thioesterase II compare
PP_4943 -0.6 -1.1 putative Glycosyl transferase compare
PP_0363 -0.6 -4.3 8-amino-7-oxononanoate synthase compare
PP_0195 -0.6 -2.0 conserved protein of unknown function compare
PP_1236 -0.6 -3.0 putative Glycine cleavage system transcriptional repressor compare
PP_0066 -0.6 -2.9 Ribosomal RNA small subunit methyltransferase B compare
PP_t29 -0.6 -1.2 tRNA-Ala compare
PP_1611 -0.6 -3.5 2-dehydro-3-deoxyphosphooctonate aldolase compare


Specific Phenotypes

For 16 genes in this experiment

For nitrogen source L-Leucine in Pseudomonas putida KT2440

For nitrogen source L-Leucine across organisms