Experiment set27IT067 for Pseudomonas putida KT2440

Compare to:

L-Isoleucine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.4 -5.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -6.1 -11.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0422 -6.0 -9.1 Indole-3-glycerol phosphate synthase compare
PP_1988 -5.7 -13.0 3-isopropylmalate dehydrogenase compare
PP_0083 -5.7 -8.7 tryptophan synthase beta chain compare
PP_4364 -5.6 -8.7 putative Anti-sigma F factor antagonist compare
PP_2168 -5.6 -16.6 Transaldolase compare
PP_0082 -5.5 -9.2 tryptophan synthase alpha chain compare
PP_2088 -5.3 -7.2 RNA polymerase sigma factor SigX compare
PP_3511 -5.3 -10.0 Branched-chain-amino-acid aminotransferase compare
PP_1986 -5.2 -6.2 3-isopropylmalate dehydratase small subunit compare
PP_1589 -5.2 -11.6 uridylyltransferase compare
PP_5048 -5.1 -9.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5014 -5.0 -6.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_5047 -5.0 -12.0 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1079 -4.9 -10.3 Ornithine carbamoyltransferase compare
PP_4723 -4.9 -18.3 Carbamoyl-phosphate synthase large chain compare
PP_0184 -4.9 -9.3 Argininosuccinate lyase compare
PP_1995 -4.8 -13.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -4.8 -16.0 Argininosuccinate synthase compare
PP_2371 -4.8 -9.7 Sulphite reductase hemoprotein, beta subunit compare
PP_2328 -4.8 -8.6 Phosphoadenosine phosphosulfate reductase compare
PP_1985 -4.7 -7.5 3-isopropylmalate dehydratase large subunit compare
PP_4909 -4.6 -13.2 phosphoserine phosphatase compare
PP_4678 -4.5 -19.8 Ketol-acid reductoisomerase compare
PP_0289 -4.5 -9.7 Imidazoleglycerol-phosphate dehydratase compare
PP_4724 -4.5 -9.0 Carbamoyl-phosphate synthase small chain compare
PP_0421 -4.5 -8.0 Anthranilate phosphoribosyltransferase compare
PP_0967 -4.5 -14.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -4.4 -15.0 Histidinol dehydrogenase compare
PP_5097 -4.3 -17.5 homoserine O-acetyltransferase compare
PP_1025 -4.2 -15.2 2-isopropylmalate synthase compare
PP_5185 -4.2 -10.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0417 -4.1 -19.5 Anthranilate synthase component 1 compare
PP_0420 -4.1 -16.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2336 -4.0 -4.8 aconitate hydratase 1 compare
PP_2001 -3.9 -13.0 O-succinylhomoserine sulfhydrylase compare
PP_2214 -3.9 -8.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4058 -3.9 -17.4 1,4-alpha-glucan branching enzyme compare
PP_0292 -3.9 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4680 -3.8 -19.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2215 -3.8 -5.5 acetyl-CoA acetyltransferase compare
PP_2217 -3.8 -6.5 enoyl-CoA hydratase compare
PP_5098 -3.8 -12.3 methionine biosynthesis protein MetW compare
PP_0965 -3.7 -14.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4999 -3.6 -2.5 dihydroorotase-like protein compare
PP_5289 -3.6 -5.1 Acetylglutamate kinase compare
PP_4890 -3.5 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_5347 -3.5 -13.1 pyruvate carboxylase subunit A compare
PP_3999 -3.4 -10.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2370 -3.4 -4.2 conserved protein of unknown function compare
PP_4679 -3.4 -8.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -3.4 -9.6 Dihydroxy-acid dehydratase compare
PP_5346 -3.4 -10.0 pyruvate carboxylase subunit B compare
PP_5015 -3.4 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2337 -3.3 -4.9 aconitate isomerase compare
PP_5348 -3.2 -12.4 Transcriptional regulator, LysR family compare
PP_5345 -2.8 -7.9 Acetyltransferase, GNAT family compare
PP_5155 -2.8 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1231 -2.7 -8.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4696 -2.7 -8.4 Nitrogen regulation protein NR(I) compare
PP_0691 -2.6 -6.5 Glutamate 5-kinase compare
PP_2327 -2.3 -6.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4631 -2.2 -8.3 conserved protein of unknown function conserved
PP_4700 -2.2 -4.4 pantothenate synthetase compare
PP_0362 -2.1 -13.9 Biotin synthase compare
PP_2216 -2.0 -9.9 short-chain acyl-CoA dehydrogenase conserved
PP_0914 -2.0 -12.5 GGDEF domain protein compare
PP_2211 -2.0 -8.0 Transcriptional regulator, AraC family conserved
PP_0787 -1.9 -4.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4143 -1.9 -5.1 conserved protein of unknown function compare
PP_2433 -1.9 -2.3 conserved protein of unknown function compare
PP_4004 -1.8 -3.9 DNA translocase FtsK compare
PP_1493 -1.8 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3590 -1.8 -8.0 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_5227 -1.7 -6.6 diaminopimelate decarboxylase compare
PP_0164 -1.7 -7.2 conserved protein of unknown function compare
PP_4060 -1.7 -11.5 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4693 -1.6 -4.6 RNA polymerase-binding transcription factor DksA compare
PP_1217 -1.6 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0406 -1.5 -4.2 Nucleotidyltransferase family protein compare
PP_0261 -1.5 -8.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5350 -1.5 -5.2 Transcriptional regulator, RpiR family compare
PP_0291 -1.4 -1.8 conserved protein of unknown function compare
PP_4400 -1.4 -8.1 Bkd operon transcriptional regulator conserved
PP_4964 -1.4 -3.4 D-erythrose 4-phosphate dehydrogenase compare
PP_4401 -1.4 -8.7 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit conserved
PP_4403 -1.4 -7.6 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_1020 -1.4 -3.5 putative glucose-6-phosphate 1-epimerase compare
PP_1783 -1.4 -1.8 dTDP-glucose pyrophosphorylase compare
PP_2302 -1.3 -6.3 DNA-binding, ATP-dependent protease compare
PP_5095 -1.3 -1.7 pyrroline-5-carboxylate reductase compare
PP_4368 -1.3 -8.7 flagellar motor switch protein compare
PP_1362 -1.2 -4.8 pyruvate kinase II compare
PP_4358 -1.2 -6.9 flagellar synthesis, switching and energizing component compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4402 -1.2 -8.6 branched-chain alpha-keto acid dehydrogenase complex, beta subunit conserved
PP_0435 -1.2 -8.5 Peptidase, M23/M37 family compare
PP_4369 -1.1 -7.8 Flagellar M-ring protein compare
PP_1355 -1.1 -9.6 Muropeptide permease AmpG compare
PP_2213 -1.1 -5.3 putative acyl-CoA synthetase compare
PP_1233 -1.1 -4.8 sulfurtransferase compare
PP_1994 -1.1 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_0434 -1.1 -7.2 Anhydro-N-acetylmuramic acid kinase compare
PP_4699 -1.1 -4.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5216 -1.1 -2.0 exopolyphosphatase compare
PP_2334 -1.1 -3.6 2-methylisocitrate lyase compare
PP_1826 -1.0 -3.6 Hydrolase, isochorismatase family compare
PP_1366 -1.0 -1.9 Transcriptional regulator MvaT, P16 subunit compare
PP_2145 -1.0 -4.6 beta-N-acetylglucosaminidase compare
PP_3821 -1.0 -6.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1468 -1.0 -2.3 Tyrosine recombinase XerD compare
PP_1654 -1.0 -3.5 cysteine synthase B compare
PP_0363 -1.0 -7.1 8-amino-7-oxononanoate synthase compare
PP_4726 -0.9 -2.0 Chaperone protein DnaJ compare
PP_4866 -0.9 -7.1 High-affinity branched-chain amino acid transport system permease protein BraD compare
PP_4863 -0.9 -7.8 high-affinity branched-chain amino acid transporter, ATP-binding compare
PP_2253 -0.9 -2.9 Transcriptional regulator, GntR family compare
PP_5104 -0.9 -5.1 thiazole synthase compare
PP_4864 -0.9 -7.1 High-affinity branched-chain amino acid transport ATP-binding protein BraF compare
PP_1664 -0.9 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_4865 -0.9 -6.2 High-affinity branched-chain amino acid transport system permease protein BraE compare
PP_5028 -0.9 -2.8 proline iminopeptidase compare
PP_1764 -0.9 -3.0 Phosphoglycolate phosphatase 2 compare
PP_1022 -0.9 -2.9 glucose 6-phosphate-1-dehydrogenase compare
PP_5035 -0.9 -5.9 Histidine utilization repressor compare
PP_5007 -0.9 -2.1 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1300 -0.9 -3.8 putative amino acid ABC transporter - ATP-binding subunit compare
PP_0366 -0.9 -4.2 dethiobiotin synthetase compare
PP_0405 -0.9 -6.7 conserved protein of unknown function compare
PP_0364 -0.9 -5.7 pimeloyl-[acp] methyl ester esterase compare
PP_0833 -0.9 -1.9 queuine tRNA-ribosyltransferase compare
PP_4179 -0.9 -5.8 Chaperone protein HtpG compare
PP_4359 -0.9 -4.8 Flagellar protein FliL compare
PP_4404 -0.8 -4.9 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_4867 -0.8 -6.2 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) compare
PP_1216 -0.8 -2.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4910 -0.8 -1.1 conserved protein of unknown function compare
PP_3649 -0.8 -2.5 Transcriptional regulator, GntR family compare
PP_4695 -0.8 -6.1 Sensory box histidine kinase compare
PP_0365 -0.8 -5.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2031 -0.8 -2.6 conserved protein of unknown function compare
PP_1428 -0.8 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_4984 -0.8 -6.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5217 -0.8 -6.7 Polyphosphate kinase compare
PP_0260 -0.8 -3.7 ADP-sugar pyrophosphorylase compare
PP_1141 -0.8 -5.4 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_3892 -0.8 -2.0 conserved protein of unknown function compare
PP_4782 -0.7 -2.9 Phosphomethylpyrimidine kinase compare
PP_1733 -0.7 -1.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_5507 -0.7 -1.6 protein of unknown function compare
PP_0735 -0.7 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_2883 -0.7 -2.1 conserved protein of unknown function compare
PP_3508 -0.7 -3.4 Protein CobW compare
PP_4050 -0.7 -6.3 glycogen synthase compare
PP_1140 -0.7 -5.7 branched chain amino acid transporter - permease subunit compare
PP_5233 -0.7 -4.5 ammonium transporter AmtB compare
PP_0002 -0.7 -3.6 probable chromosome partition protein compare
PP_0878 -0.7 -4.4 dipeptide ABC transporter, binding subunit compare
PP_4923 -0.7 -4.6 Outer membrane efflux protein compare
PP_1139 -0.7 -5.7 branched chain amino acid transporter - permease subunit compare
PP_0127 -0.7 -3.2 Thiol:disulfide interchange protein compare
PP_2414 -0.7 -1.9 conserved exported protein of unknown function compare
PP_1137 -0.7 -4.5 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_2087 -0.7 -1.6 CmpX protein compare
PP_1198 -0.6 -1.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5426 -0.6 -4.8 conserved protein of unknown function compare
PP_3505 -0.6 -1.8 conserved protein of unknown function compare
PP_2880 -0.6 -2.2 Transcriptional regulator, TetR family compare
PP_0719 -0.6 -0.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3376 -0.6 -3.0 putative phosphonate dehydrogenase compare
PP_5328 -0.6 -1.7 putative phosphate transport system permease protein compare
PP_1734 -0.6 -1.5 Probable septum site-determining protein MinC compare
PP_2348 -0.6 -2.8 Sensor histidine kinase compare
PP_1138 -0.6 -2.7 branched chain amino acid transporter - ATP binding subunit compare
PP_4480 -0.6 -4.3 arginine N-succinyltransferase, subunit alpha compare
PP_1348 -0.6 -3.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1299 -0.6 -4.3 putative amino acid ABC transporter - membrane subunit compare
PP_4937 -0.6 -1.8 toluene tolerance protein compare
PP_0949 -0.6 -3.5 putative ATP-binding protein UPF0042 compare
PP_5652 -0.6 -1.7 conserved protein of unknown function, phage origin compare
PP_5267 -0.6 -1.4 putative cytochrome c5 compare
PP_4370 -0.6 -2.5 Flagellar hook-basal body complex protein FliE compare
PP_5236 -0.6 -3.9 conserved protein of unknown function compare
PP_3627 -0.6 -3.3 conserved protein of unknown function compare
PP_4701 -0.6 -1.0 glucose-6-phosphate isomerase compare
PP_4340 -0.6 -2.4 response regulator for chemotactic signal transduction compare
PP_4101 -0.6 -2.9 Acetyltransferase, GNAT family compare
PP_5230 -0.6 -2.0 Tyrosine recombinase XerC compare
PP_5628 -0.6 -2.2 conserved protein of unknown function compare
PP_3105 -0.6 -2.2 conserved membrane protein of unknown function compare
PP_0276 -0.6 -1.2 Transcriptional regulator, Cro/CI family compare
PP_1097 -0.6 -1.2 Methionine--tRNA ligase compare
PP_3239 -0.6 -1.6 putative cointegrate resolution protein T Tn4652 compare
PP_1800 -0.6 -4.2 Oxidoreductase Rmd compare
PP_4504 -0.6 -1.6 conserved exported protein of unknown function compare
PP_4943 -0.5 -1.3 putative Glycosyl transferase compare
PP_0025 -0.5 -1.1 hypothetical protein compare
PP_2324 -0.5 -3.9 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_0182 -0.5 -2.4 conserved protein of unknown function compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source L-Isoleucine in Pseudomonas putida KT2440

For nitrogen source L-Isoleucine across organisms