Experiment set27IT065 for Pseudomonas putida KT2440

Compare to:

L-Phenylalanine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0083 -5.6 -7.6 tryptophan synthase beta chain compare
PP_5048 -5.5 -7.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0082 -5.4 -8.3 tryptophan synthase alpha chain compare
PP_1079 -5.3 -9.2 Ornithine carbamoyltransferase compare
PP_1988 -4.8 -12.0 3-isopropylmalate dehydrogenase compare
PP_1986 -4.8 -4.8 3-isopropylmalate dehydratase small subunit compare
PP_2088 -4.7 -7.5 RNA polymerase sigma factor SigX compare
PP_0966 -4.5 -15.1 Histidinol dehydrogenase compare
PP_0293 -4.2 -5.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -4.2 -9.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4058 -4.1 -16.3 1,4-alpha-glucan branching enzyme compare
PP_4678 -4.0 -16.6 Ketol-acid reductoisomerase compare
PP_4680 -3.9 -15.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3511 -3.9 -10.3 Branched-chain-amino-acid aminotransferase compare
PP_3590 -3.9 -6.6 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1995 -3.9 -11.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5047 -3.8 -9.7 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_2168 -3.8 -14.6 Transaldolase compare
PP_0292 -3.7 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0967 -3.7 -13.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5097 -3.6 -15.7 homoserine O-acetyltransferase compare
PP_0184 -3.5 -9.4 Argininosuccinate lyase compare
PP_4724 -3.5 -9.9 Carbamoyl-phosphate synthase small chain compare
PP_0289 -3.5 -10.0 Imidazoleglycerol-phosphate dehydratase compare
PP_0422 -3.5 -5.9 Indole-3-glycerol phosphate synthase compare
PP_4723 -3.4 -16.0 Carbamoyl-phosphate synthase large chain compare
PP_0420 -3.3 -11.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5098 -3.2 -9.2 methionine biosynthesis protein MetW compare
PP_2001 -3.2 -10.8 O-succinylhomoserine sulfhydrylase compare
PP_5014 -3.2 -5.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_5128 -3.2 -8.6 Dihydroxy-acid dehydratase compare
PP_1088 -3.2 -13.3 Argininosuccinate synthase compare
PP_3434 -3.1 -5.5 conserved protein of unknown function compare
PP_0965 -3.1 -11.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -3.1 -5.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4364 -3.0 -7.6 putative Anti-sigma F factor antagonist compare
PP_4909 -3.0 -9.1 phosphoserine phosphatase compare
PP_0421 -3.0 -10.4 Anthranilate phosphoribosyltransferase compare
PP_1985 -2.9 -7.9 3-isopropylmalate dehydratase large subunit compare
PP_4890 -2.9 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_2371 -2.9 -7.3 Sulphite reductase hemoprotein, beta subunit compare
PP_4895 -2.8 -2.7 tRNA dimethylallyltransferase compare
PP_4489 -2.8 -15.0 sigma-54 dependent transcriptional regulator conserved
PP_4490 -2.7 -13.1 phenylalanine-4-hydroxylase conserved
PP_4999 -2.7 -2.5 dihydroorotase-like protein compare
PP_2370 -2.6 -5.6 conserved protein of unknown function compare
PP_5289 -2.5 -5.2 Acetylglutamate kinase compare
PP_3433 -2.5 -12.9 4-hydroxyphenylpyruvate dioxygenase conserved
PP_5155 -2.5 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0833 -2.5 -3.7 queuine tRNA-ribosyltransferase compare
PP_1589 -2.4 -10.7 uridylyltransferase compare
PP_3999 -2.1 -8.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1620 -2.0 -7.2 5'(3')-nucleotidase and polyphosphatase compare
PP_4679 -2.0 -4.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1917 -1.9 -9.4 4-amino-4-deoxychorismate lyase compare
PP_0417 -1.9 -14.6 Anthranilate synthase component 1 compare
PP_0691 -1.9 -4.4 Glutamate 5-kinase compare
PP_4699 -1.9 -4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4696 -1.9 -7.0 Nitrogen regulation protein NR(I) compare
PP_1217 -1.8 -5.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5015 -1.8 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2329 -1.8 -10.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1493 -1.8 -3.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2302 -1.7 -6.4 DNA-binding, ATP-dependent protease compare
PP_2328 -1.7 -6.2 Phosphoadenosine phosphosulfate reductase compare
PP_4620 -1.6 -8.4 Fumarylacetoacetase compare
PP_4004 -1.6 -4.4 DNA translocase FtsK compare
PP_4917 -1.6 -3.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1138 -1.5 -4.1 branched chain amino acid transporter - ATP binding subunit compare
PP_1198 -1.5 -4.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5227 -1.4 -4.8 diaminopimelate decarboxylase compare
PP_1141 -1.4 -9.2 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit conserved
PP_1866 -1.4 -6.7 Phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2327 -1.4 -5.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3105 -1.4 -3.8 conserved membrane protein of unknown function compare
PP_1137 -1.4 -8.1 high-affinity branched-chain amino acid transporter, ATP binding conserved
PP_1139 -1.4 -10.1 branched chain amino acid transporter - permease subunit conserved
PP_4693 -1.3 -4.6 RNA polymerase-binding transcription factor DksA compare
PP_2414 -1.3 -2.7 conserved exported protein of unknown function compare
PP_1140 -1.3 -9.4 branched chain amino acid transporter - permease subunit conserved
PP_5346 -1.3 -7.6 pyruvate carboxylase subunit B compare
PP_5347 -1.3 -9.0 pyruvate carboxylase subunit A compare
PP_4695 -1.2 -8.7 Sensory box histidine kinase compare
PP_1025 -1.2 -6.5 2-isopropylmalate synthase compare
PP_2433 -1.2 -2.3 conserved protein of unknown function compare
PP_4619 -1.2 -6.0 Maleylacetoacetate isomerase conserved
PP_0393 -1.2 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0291 -1.1 -1.9 conserved protein of unknown function compare
PP_5233 -1.1 -7.0 ammonium transporter AmtB compare
PP_1468 -1.1 -2.2 Tyrosine recombinase XerD compare
PP_5217 -1.1 -9.2 Polyphosphate kinase compare
PP_4700 -1.1 -2.9 pantothenate synthetase compare
PP_2217 -1.0 -3.4 enoyl-CoA hydratase compare
PP_4060 -1.0 -6.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4143 -1.0 -3.5 conserved protein of unknown function compare
PP_1322 -1.0 -1.9 putative Lipoprotein compare
PP_1231 -1.0 -4.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1215 -0.9 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_2348 -0.9 -3.8 Sensor histidine kinase compare
PP_3376 -0.9 -4.2 putative phosphonate dehydrogenase compare
PP_4799 -0.9 -0.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5090 -0.9 -2.3 putative cell division protein compare
PP_1328 -0.9 -1.8 Protein MraZ compare
PP_0117 -0.9 -4.7 Zn(2+) ABC transporter - permease subunit compare
PP_1408 -0.9 -5.5 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_5465 -0.9 -5.3 conserved protein of unknown function compare
PP_0362 -0.9 -6.8 Biotin synthase compare
PP_t12 -0.9 -1.1 tRNA-Thr compare
PP_0787 -0.9 -3.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3286 -0.8 -4.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_5348 -0.8 -4.3 Transcriptional regulator, LysR family compare
PP_0120 -0.8 -5.3 putative zinc ABC transporter compare
PP_0153 -0.8 -2.2 hypothetical protein compare
PP_1216 -0.8 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2087 -0.8 -1.9 CmpX protein compare
PP_1553 -0.8 -1.4 conserved protein of unknown function compare
PP_4631 -0.7 -2.8 conserved protein of unknown function compare
PP_t10 -0.7 -1.3 tRNA-Pro compare
PP_0834 -0.7 -1.5 Sec translocation complex subunit YajC compare
PP_4701 -0.7 -1.1 glucose-6-phosphate isomerase compare
PP_0002 -0.7 -4.2 probable chromosome partition protein compare
PP_5717 -0.7 -2.1 conserved protein of unknown function compare
PP_4340 -0.7 -3.6 response regulator for chemotactic signal transduction compare
PP_0673 -0.7 -1.0 conserved protein of unknown function compare
PP_5055 -0.7 -2.5 Sulfurtransferase compare
PP_4685 -0.7 -4.2 conserved protein of unknown function compare
PP_5621 -0.7 -2.5 protein of unknown function compare
PP_5701 -0.7 -1.7 conserved protein of unknown function compare
PP_3880 -0.7 -1.6 conserved exported protein of unknown function compare
PP_0063 -0.7 -2.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4477 -0.7 -4.1 N-succinylarginine dihydrolase compare
PP_1824 -0.7 -0.7 Smr domain protein compare
PP_3378 -0.6 -1.6 putative 2-ketogluconokinase compare
PP_0164 -0.6 -3.3 conserved protein of unknown function compare
PP_0940 -0.6 -4.5 putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD compare
PP_4054 -0.6 -1.1 conserved protein of unknown function compare
PP_0914 -0.6 -4.6 GGDEF domain protein compare
PP_5274 -0.6 -1.8 conserved protein of unknown function compare
PP_2439 -0.6 -1.2 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4642 -0.6 -0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_3926 -0.6 -1.7 short-chain dehydrogenase compare
PP_1344 -0.6 -1.6 conserved protein of unknown function compare
PP_4338 -0.6 -4.2 Chemotaxis histidine kinase CheA compare
PP_0881 -0.6 -3.4 dipeptide ABC transporter - putative membrane subunit compare
PP_4804 -0.6 -1.5 RlpA-like lipoprotein compare
PP_2326 -0.6 -3.7 Universal stress protein compare
PP_5471 -0.6 -1.5 putative response regulator receiver protein compare
PP_3892 -0.6 -1.5 conserved protein of unknown function compare
PP_5008 -0.6 -1.8 Poly granule-associated protein compare
PP_0878 -0.6 -3.2 dipeptide ABC transporter, binding subunit compare
PP_4560 -0.6 -2.5 putative Ribonuclease BN compare
PP_1690 -0.6 -2.4 conserved protein of unknown function compare
PP_0185 -0.6 -3.9 Positive alginate biosynthesis regulatory protein compare
PP_3035 -0.6 -1.1 conserved protein of unknown function compare
PP_3277 -0.6 -3.1 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_4050 -0.6 -5.0 glycogen synthase compare
PP_2820 -0.6 -1.7 HTH-type transcriptional regulator nfxB compare
PP_1605 -0.6 -1.2 Ribonuclease HII compare
PP_4864 -0.6 -4.5 High-affinity branched-chain amino acid transport ATP-binding protein BraF compare
PP_4268 -0.6 -1.2 nucleoid-associated broad specificity regulator compare
PP_0995 -0.6 -3.1 conserved membrane protein of unknown function compare
PP_2631 -0.6 -1.1 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1826 -0.5 -1.7 Hydrolase, isochorismatase family compare
PP_4832 -0.5 -2.4 Precorrin-6x reductase compare
PP_1020 -0.5 -1.1 putative glucose-6-phosphate 1-epimerase compare
PP_2499 -0.5 -1.3 conserved protein of unknown function compare
PP_1999 -0.5 -1.3 membrane protein required for colicin V production compare
PP_4387 -0.5 -1.8 conserved exported protein of unknown function compare
PP_3506 -0.5 -2.3 Magnesium chelatase, subunit ChII compare
PP_4505 -0.5 -3.4 Sensor histidine kinase compare
PP_1239 -0.5 -2.8 Metallo-beta-lactamase family protein compare
PP_2646 -0.5 -1.8 conserved protein of unknown function compare
PP_4866 -0.5 -4.0 High-affinity branched-chain amino acid transport system permease protein BraD compare
PP_4863 -0.5 -4.3 high-affinity branched-chain amino acid transporter, ATP-binding compare
PP_4495 -0.5 -4.5 aromatic amino acid transport protein compare
PP_5230 -0.5 -1.7 Tyrosine recombinase XerC compare
PP_4073 -0.5 -1.5 conserved exported protein of unknown function compare
PP_5350 -0.5 -2.0 Transcriptional regulator, RpiR family compare
PP_1026 -0.5 -2.1 Peptidase, M23/M37 family compare
PP_4870 -0.5 -1.8 Azurin compare
PP_t64 -0.5 -2.7 tRNA-Gly compare
PP_4828 -0.5 -1.1 Precorrin-8X methylmutase compare
PP_0248 -0.5 -3.7 Probable alpha-L-glutamate ligase compare
PP_5095 -0.5 -0.6 pyrroline-5-carboxylate reductase compare
PP_4482 -0.5 -2.0 Transcriptional regulator, AraC family compare
PP_0261 -0.5 -3.1 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2750 -0.5 -2.1 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1346 -0.5 -2.3 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_0209 -0.5 -2.6 ATP-binding taurine transporter subunit compare
PP_2256 -0.5 -2.4 Transcriptional regulator, Cro/CI family compare
PP_4966 -0.5 -1.7 transcriptional regulator of methionine metabolism compare
PP_1269 -0.5 -0.8 Universal stress protein family compare
PP_5203 -0.5 -2.6 5-formyltetrahydrofolate cyclo-ligase compare
PP_2232 -0.5 -2.3 XRE family transcriptional regulator compare
PP_5598 -0.5 -1.8 conserved protein of unknown function compare
PP_4684 -0.5 -3.2 conserved protein of unknown function with kinase-like domain compare
PP_4754 -0.5 -3.1 Transcriptional regulator, TetR family compare
PP_0937 -0.5 -2.4 endoribonuclease G (RNAse G) compare
PP_2067 -0.5 -2.4 putative EmrB/QacA family drug resistance transporter compare
PP_1662 -0.5 -2.6 conserved protein of unknown function compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source L-Phenylalanine in Pseudomonas putida KT2440

For nitrogen source L-Phenylalanine across organisms