Experiment set27IT064 for Pseudomonas putida KT2440

Compare to:

L-Phenylalanine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0083 -6.0 -5.8 tryptophan synthase beta chain compare
PP_0082 -5.5 -8.4 tryptophan synthase alpha chain compare
PP_1985 -5.3 -7.1 3-isopropylmalate dehydratase large subunit compare
PP_0293 -5.0 -4.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -4.9 -11.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1079 -4.8 -9.8 Ornithine carbamoyltransferase compare
PP_5048 -4.8 -8.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2168 -4.7 -15.6 Transaldolase compare
PP_0966 -4.6 -12.4 Histidinol dehydrogenase compare
PP_0292 -4.5 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4680 -4.5 -18.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -4.3 -13.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3590 -4.1 -8.6 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1986 -4.0 -5.0 3-isopropylmalate dehydratase small subunit compare
PP_1988 -3.8 -10.9 3-isopropylmalate dehydrogenase compare
PP_0967 -3.8 -13.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4364 -3.7 -6.9 putative Anti-sigma F factor antagonist compare
PP_5014 -3.7 -7.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_2088 -3.7 -5.2 RNA polymerase sigma factor SigX compare
PP_4678 -3.6 -15.0 Ketol-acid reductoisomerase compare
PP_5098 -3.6 -10.7 methionine biosynthesis protein MetW compare
PP_0289 -3.6 -8.2 Imidazoleglycerol-phosphate dehydratase compare
PP_2371 -3.5 -8.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4058 -3.5 -15.7 1,4-alpha-glucan branching enzyme compare
PP_3511 -3.5 -11.2 Branched-chain-amino-acid aminotransferase compare
PP_4890 -3.5 -9.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_5097 -3.5 -16.3 homoserine O-acetyltransferase compare
PP_4723 -3.4 -15.4 Carbamoyl-phosphate synthase large chain compare
PP_5047 -3.4 -11.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4489 -3.3 -15.0 sigma-54 dependent transcriptional regulator conserved
PP_3433 -3.3 -11.0 4-hydroxyphenylpyruvate dioxygenase conserved
PP_0420 -3.2 -14.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0422 -3.1 -6.6 Indole-3-glycerol phosphate synthase compare
PP_1088 -3.1 -13.4 Argininosuccinate synthase compare
PP_5289 -3.0 -7.3 Acetylglutamate kinase compare
PP_4724 -3.0 -8.0 Carbamoyl-phosphate synthase small chain compare
PP_0421 -3.0 -8.7 Anthranilate phosphoribosyltransferase compare
PP_5185 -3.0 -9.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4490 -3.0 -12.4 phenylalanine-4-hydroxylase conserved
PP_0184 -3.0 -8.0 Argininosuccinate lyase compare
PP_1589 -3.0 -11.9 uridylyltransferase compare
PP_0833 -3.0 -3.5 queuine tRNA-ribosyltransferase compare
PP_5155 -2.9 -5.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2001 -2.9 -12.5 O-succinylhomoserine sulfhydrylase compare
PP_0965 -2.9 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5128 -2.8 -9.8 Dihydroxy-acid dehydratase compare
PP_4909 -2.8 -8.7 phosphoserine phosphatase compare
PP_4917 -2.7 -3.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3999 -2.7 -9.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4696 -2.6 -7.7 Nitrogen regulation protein NR(I) compare
PP_4895 -2.5 -3.4 tRNA dimethylallyltransferase compare
PP_0691 -2.3 -5.9 Glutamate 5-kinase compare
PP_2302 -2.1 -6.0 DNA-binding, ATP-dependent protease compare
PP_4699 -2.1 -4.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2328 -2.0 -6.7 Phosphoadenosine phosphosulfate reductase compare
PP_4679 -2.0 -6.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2433 -1.9 -4.4 conserved protein of unknown function compare
PP_2329 -1.9 -10.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1620 -1.8 -8.1 5'(3')-nucleotidase and polyphosphatase compare
PP_3434 -1.8 -4.2 conserved protein of unknown function compare
PP_5095 -1.8 -2.1 pyrroline-5-carboxylate reductase compare
PP_2402 -1.8 -3.3 putative Sensor histidine kinase compare
PP_5227 -1.8 -5.3 diaminopimelate decarboxylase compare
PP_0417 -1.7 -13.1 Anthranilate synthase component 1 compare
PP_1493 -1.7 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1468 -1.7 -4.1 Tyrosine recombinase XerD compare
PP_2370 -1.7 -2.7 conserved protein of unknown function compare
PP_4620 -1.6 -8.1 Fumarylacetoacetase compare
PP_1866 -1.6 -7.9 Phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1217 -1.6 -4.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1198 -1.6 -4.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5015 -1.6 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1138 -1.6 -4.8 branched chain amino acid transporter - ATP binding subunit compare
PP_4693 -1.6 -5.4 RNA polymerase-binding transcription factor DksA compare
PP_1917 -1.5 -7.5 4-amino-4-deoxychorismate lyase compare
PP_2327 -1.5 -6.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1137 -1.5 -7.6 high-affinity branched-chain amino acid transporter, ATP binding conserved
PP_4619 -1.5 -6.2 Maleylacetoacetate isomerase conserved
PP_5114 -1.4 -1.9 putative adenine methyltransferase compare
PP_1141 -1.4 -8.9 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit conserved
PP_1140 -1.3 -9.8 branched chain amino acid transporter - permease subunit conserved
PP_5233 -1.3 -7.7 ammonium transporter AmtB compare
PP_5465 -1.3 -6.3 conserved protein of unknown function compare
PP_5346 -1.3 -7.5 pyruvate carboxylase subunit B compare
PP_1215 -1.2 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1231 -1.2 -5.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1139 -1.2 -9.0 branched chain amino acid transporter - permease subunit conserved
PP_5347 -1.2 -8.1 pyruvate carboxylase subunit A compare
PP_4695 -1.2 -8.2 Sensory box histidine kinase compare
PP_1328 -1.2 -3.4 Protein MraZ compare
PP_1055 -1.2 -1.7 Type II secretion pathway protein GspN compare
PP_0291 -1.1 -2.2 conserved protein of unknown function compare
PP_1025 -1.1 -6.0 2-isopropylmalate synthase compare
PP_4999 -1.1 -1.2 dihydroorotase-like protein compare
PP_3766 -1.1 -2.4 Lactoylglutathione lyase compare
PP_0362 -1.0 -7.5 Biotin synthase compare
PP_5230 -1.0 -3.4 Tyrosine recombinase XerC compare
PP_3312 -1.0 -1.7 putative Heat shock protein compare
PP_2414 -1.0 -1.2 conserved exported protein of unknown function compare
PP_1408 -1.0 -6.5 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_0117 -1.0 -5.6 Zn(2+) ABC transporter - permease subunit compare
PP_4793 -1.0 -2.0 conserved protein of unknown function compare
PP_4799 -0.9 -0.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5217 -0.9 -8.0 Polyphosphate kinase compare
PP_1528 -0.9 -1.4 conserved protein of unknown function compare
PP_3649 -0.9 -2.6 Transcriptional regulator, GntR family compare
PP_4143 -0.9 -3.8 conserved protein of unknown function compare
PP_5348 -0.9 -5.4 Transcriptional regulator, LysR family compare
PP_2031 -0.9 -2.1 conserved protein of unknown function compare
PP_5055 -0.9 -3.7 Sulfurtransferase compare
PP_1216 -0.9 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0673 -0.8 -1.7 conserved protein of unknown function compare
PP_2087 -0.8 -1.4 CmpX protein compare
PP_0834 -0.8 -2.5 Sec translocation complex subunit YajC compare
PP_1734 -0.8 -1.8 Probable septum site-determining protein MinC compare
PP_4060 -0.8 -4.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_2793 -0.8 -2.6 Acyl-CoA dehydrogenase family protein compare
PP_0393 -0.8 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4482 -0.8 -3.3 Transcriptional regulator, AraC family compare
PP_0120 -0.8 -4.4 putative zinc ABC transporter compare
PP_0832 -0.8 -3.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0593 -0.8 -1.2 putative ribosome-binding factor compare
PP_1783 -0.8 -1.2 dTDP-glucose pyrophosphorylase compare
PP_3833 -0.7 -2.7 Response regulator compare
PP_1269 -0.7 -1.1 Universal stress protein family compare
PP_1729 -0.7 -1.8 conserved protein of unknown function compare
PP_0914 -0.7 -5.2 GGDEF domain protein compare
PP_1404 -0.7 -1.6 conserved protein of unknown function compare
PP_3376 -0.7 -2.8 putative phosphonate dehydrogenase compare
PP_2136 -0.7 -2.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2326 -0.7 -3.9 Universal stress protein compare
PP_4505 -0.7 -3.1 Sensor histidine kinase compare
PP_2013 -0.7 -3.5 conserved protein of unknown function compare
PP_1824 -0.7 -1.6 Smr domain protein compare
PP_3241 -0.6 -1.2 conserved exported protein of unknown function compare
PP_4701 -0.6 -1.0 glucose-6-phosphate isomerase compare
PP_0787 -0.6 -2.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4050 -0.6 -5.5 glycogen synthase compare
PP_3481 -0.6 -1.3 conserved exported protein of unknown function compare
PP_4477 -0.6 -4.0 N-succinylarginine dihydrolase compare
PP_4010 -0.6 -3.1 DNA replication inhibitor compare
PP_2217 -0.6 -1.6 enoyl-CoA hydratase compare
PP_3239 -0.6 -1.3 putative cointegrate resolution protein T Tn4652 compare
PP_2137 -0.6 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_4814 -0.6 -2.4 ATP-dependent protease La domain protein compare
PP_5003 -0.6 -4.0 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_5717 -0.6 -1.1 conserved protein of unknown function compare
PP_3924 -0.6 -2.0 conserved protein of unknown function compare
PP_4054 -0.6 -0.8 conserved protein of unknown function compare
PP_4910 -0.6 -1.5 conserved protein of unknown function compare
PP_1362 -0.6 -2.4 pyruvate kinase II compare
PP_0232 -0.6 -1.2 ATP-binding taurine transporter subunit compare
PP_5274 -0.6 -1.7 conserved protein of unknown function compare
PP_1654 -0.6 -1.8 cysteine synthase B compare
PP_4864 -0.6 -4.5 High-affinity branched-chain amino acid transport ATP-binding protein BraF compare
PP_4820 -0.6 -3.2 tRNA-dihydrouridine synthase B compare
PP_4700 -0.6 -1.7 pantothenate synthetase compare
PP_3265 -0.6 -1.7 putative phosphohydrolase of unknown function compare
PP_5730 -0.5 -2.8 conserved protein of unknown function compare
PP_1690 -0.5 -2.7 conserved protein of unknown function compare
PP_2581 -0.5 -1.6 conserved protein of unknown function compare
PP_5508 -0.5 -1.0 conserved protein of unknown function compare
PP_1553 -0.5 -1.8 conserved protein of unknown function compare
PP_1237 -0.5 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1713 -0.5 -1.7 Transcriptional regulator PcaQ compare
PP_0878 -0.5 -3.5 dipeptide ABC transporter, binding subunit compare
PP_4004 -0.5 -1.8 DNA translocase FtsK compare
PP_4268 -0.5 -1.2 nucleoid-associated broad specificity regulator compare
PP_0002 -0.5 -3.3 probable chromosome partition protein compare
PP_3286 -0.5 -2.8 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4863 -0.5 -4.5 high-affinity branched-chain amino acid transporter, ATP-binding compare
PP_4098 -0.5 -1.0 UvrABC system protein C compare
PP_0940 -0.5 -3.9 putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD compare
PP_1439 -0.5 -1.5 conserved exported protein of unknown function compare
PP_0942 -0.5 -3.8 regulatory protease compare
PP_4866 -0.5 -4.1 High-affinity branched-chain amino acid transport system permease protein BraD compare
PP_0164 -0.5 -2.4 conserved protein of unknown function compare
PP_3447 -0.5 -1.1 conserved membrane protein of unknown function compare
PP_2348 -0.5 -3.1 Sensor histidine kinase compare
PP_4754 -0.5 -3.5 Transcriptional regulator, TetR family compare
PP_0185 -0.5 -3.8 Positive alginate biosynthesis regulatory protein compare
PP_4379 -0.5 -2.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4288 -0.5 -2.1 ureidoglycolate lyase compare
PP_2740 -0.5 -1.3 Transcriptional regulator, MerR family compare
PP_4685 -0.5 -3.1 conserved protein of unknown function compare
PP_0204 -0.5 -3.1 Transcriptional regulator, GntR family compare
PP_5303 -0.5 -1.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0937 -0.5 -2.7 endoribonuclease G (RNAse G) compare
PP_3398 -0.5 -1.8 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4495 -0.5 -4.4 aromatic amino acid transport protein compare
PP_2256 -0.5 -2.8 Transcriptional regulator, Cro/CI family compare
PP_3930 -0.5 -1.8 conserved exported protein of unknown function compare
PP_3098 -0.5 -0.9 conserved protein of unknown function compare
PP_4338 -0.5 -3.0 Chemotaxis histidine kinase CheA compare
PP_0533 -0.5 -3.3 histidine kinase compare
PP_3035 -0.5 -1.5 conserved protein of unknown function compare
PP_3281 -0.5 -2.4 hydroxyphenylacetyl-CoA thioesterase compare
PP_3122 -0.5 -2.9 acetoacetyl CoA-transferase (subunit A) compare
PP_4073 -0.5 -1.4 conserved exported protein of unknown function compare
PP_4621 -0.5 -3.7 Homogentisate 1,2-dioxygenase compare


Specific Phenotypes

For 13 genes in this experiment

For nitrogen source L-Phenylalanine in Pseudomonas putida KT2440

For nitrogen source L-Phenylalanine across organisms