Experiment set27IT063 for Pseudomonas putida KT2440

Compare to:

L-Histidine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_3511 -6.5 -10.9 Branched-chain-amino-acid aminotransferase compare
PP_5289 -6.2 -6.0 Acetylglutamate kinase compare
PP_4678 -6.1 -18.7 Ketol-acid reductoisomerase compare
PP_0082 -6.0 -7.2 tryptophan synthase alpha chain compare
PP_1079 -6.0 -10.0 Ornithine carbamoyltransferase compare
PP_0787 -6.0 -5.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0422 -5.7 -8.6 Indole-3-glycerol phosphate synthase compare
PP_4680 -5.7 -18.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0083 -5.5 -8.4 tryptophan synthase beta chain compare
PP_5036 -5.4 -11.4 probable formiminoglutamate deiminase conserved
PP_1988 -5.4 -12.8 3-isopropylmalate dehydrogenase compare
PP_1995 -5.2 -12.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4723 -5.2 -16.8 Carbamoyl-phosphate synthase large chain compare
PP_1985 -5.1 -7.7 3-isopropylmalate dehydratase large subunit compare
PP_2371 -5.1 -8.4 Sulphite reductase hemoprotein, beta subunit compare
PP_4679 -5.1 -10.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -5.0 -5.9 3-isopropylmalate dehydratase small subunit compare
PP_4909 -5.0 -12.5 phosphoserine phosphatase compare
PP_1088 -4.9 -14.9 Argininosuccinate synthase compare
PP_4724 -4.9 -7.9 Carbamoyl-phosphate synthase small chain compare
PP_5075 -4.8 -18.9 glutamate synthase (NADPH) beta subunit compare
PP_0417 -4.7 -20.5 Anthranilate synthase component 1 compare
PP_0691 -4.5 -5.4 Glutamate 5-kinase compare
PP_5076 -4.5 -21.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_5097 -4.5 -17.9 homoserine O-acetyltransferase compare
PP_5185 -4.4 -9.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0420 -4.4 -15.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0184 -4.3 -9.2 Argininosuccinate lyase compare
PP_1231 -4.2 -10.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5098 -4.2 -9.0 methionine biosynthesis protein MetW compare
PP_5128 -4.2 -8.0 Dihydroxy-acid dehydratase compare
PP_3999 -4.2 -9.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4700 -4.1 -2.9 pantothenate synthetase compare
PP_0421 -4.0 -9.4 Anthranilate phosphoribosyltransferase compare
PP_2001 -4.0 -12.1 O-succinylhomoserine sulfhydrylase compare
PP_5029 -3.9 -14.8 N-formylglutamate deformylase conserved
PP_5155 -3.8 -3.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1025 -3.7 -12.3 2-isopropylmalate synthase compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_0339 -3.3 -5.0 Pyruvate dehydrogenase E1 component compare
PP_2370 -3.3 -3.1 conserved protein of unknown function compare
PP_5303 -3.2 -7.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2327 -3.1 -9.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4696 -2.7 -8.2 Nitrogen regulation protein NR(I) compare
PP_5030 -2.6 -8.9 Imidazolonepropionase conserved
PP_1022 -2.6 -6.9 glucose 6-phosphate-1-dehydrogenase compare
PP_1216 -2.5 -3.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2328 -2.5 -8.7 Phosphoadenosine phosphosulfate reductase compare
PP_0127 -2.3 -6.5 Thiol:disulfide interchange protein compare
PP_0888 -2.3 -2.7 Photosynthetic apparatus regulatory protein RegA compare
PP_4364 -2.3 -5.5 putative Anti-sigma F factor antagonist compare
PP_1912 -2.2 -6.8 Phosphate acyltransferase compare
PP_4874 -2.1 -2.0 50S ribosomal protein L9 compare
PP_5347 -2.0 -10.7 pyruvate carboxylase subunit A compare
PP_5346 -1.9 -9.5 pyruvate carboxylase subunit B compare
PP_0809 -1.8 -11.8 disulfide bond formation protein B compare
PP_3790 -1.8 -9.1 diaminopimelate epimerase compare
PP_2168 -1.8 -10.8 Transaldolase compare
PP_0833 -1.8 -3.3 queuine tRNA-ribosyltransferase compare
PP_2414 -1.7 -2.2 conserved exported protein of unknown function compare
PP_5348 -1.6 -8.5 Transcriptional regulator, LysR family compare
PP_4782 -1.6 -6.5 Phosphomethylpyrimidine kinase compare
PP_1426 -1.5 -11.8 L-aspartate oxidase compare
PP_4964 -1.5 -3.4 D-erythrose 4-phosphate dehydrogenase compare
PP_1217 -1.5 -4.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1468 -1.5 -4.0 Tyrosine recombinase XerD compare
PP_5331 -1.5 -4.0 Long-chain acyl-CoA thioester hydrolase compare
PP_5095 -1.4 -1.8 pyrroline-5-carboxylate reductase compare
PP_2402 -1.4 -2.5 putative Sensor histidine kinase compare
PP_5104 -1.4 -7.1 thiazole synthase compare
PP_2378 -1.4 -2.5 Fe/S biogenesis protein NfuA compare
PP_5048 -1.3 -6.2 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4699 -1.3 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1233 -1.3 -5.2 sulfurtransferase compare
PP_4693 -1.3 -3.9 RNA polymerase-binding transcription factor DksA compare
PP_4684 -1.3 -6.6 conserved protein of unknown function with kinase-like domain compare
PP_0735 -1.2 -2.9 molybdopterin-synthase adenylyltransferase compare
PP_3508 -1.2 -4.2 Protein CobW compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4828 -1.2 -1.4 Precorrin-8X methylmutase compare
PP_1629 -1.1 -4.1 Protein RecA compare
PP_0362 -1.1 -9.0 Biotin synthase compare
PP_5227 -1.1 -6.3 diaminopimelate decarboxylase compare
PP_4922 -1.1 -8.4 Phosphomethylpyrimidine synthase compare
PP_0365 -1.1 -7.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0164 -1.1 -5.1 conserved protein of unknown function compare
PP_1348 -1.1 -5.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3892 -1.0 -2.4 conserved protein of unknown function compare
PP_4984 -1.0 -6.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0363 -1.0 -7.3 8-amino-7-oxononanoate synthase compare
PP_0834 -1.0 -2.2 Sec translocation complex subunit YajC compare
PP_1994 -1.0 -1.4 tRNA pseudouridine (38-40)synthase compare
PP_0393 -1.0 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1654 -0.9 -3.1 cysteine synthase B compare
PP_3241 -0.9 -1.8 conserved exported protein of unknown function compare
PP_5628 -0.9 -2.1 conserved protein of unknown function compare
PP_5328 -0.9 -2.2 putative phosphate transport system permease protein compare
PP_1770 -0.9 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_3098 -0.9 -1.6 conserved protein of unknown function compare
PP_0364 -0.9 -6.3 pimeloyl-[acp] methyl ester esterase compare
PP_1679 -0.9 -3.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4917 -0.8 -2.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3649 -0.8 -2.4 Transcriptional regulator, GntR family compare
PP_3505 -0.8 -2.5 conserved protein of unknown function compare
PP_1637 -0.8 -3.3 Transcriptional regulator, LysR family compare
PP_0366 -0.8 -5.1 dethiobiotin synthetase compare
PP_1733 -0.8 -1.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_3105 -0.8 -2.7 conserved membrane protein of unknown function compare
PP_5032 -0.8 -5.1 Histidine ammonia-lyase compare
PP_4701 -0.8 -1.2 glucose-6-phosphate isomerase compare
PP_0084 -0.8 -4.3 HTH-type transcriptional regulator TrpI compare
PP_5621 -0.8 -2.2 protein of unknown function compare
PP_1681 -0.8 -5.7 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_3506 -0.8 -3.4 Magnesium chelatase, subunit ChII compare
PP_3286 -0.8 -4.5 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2345 -0.7 -2.5 conserved exported protein of unknown function compare
PP_3507 -0.7 -5.7 Aerobic cobaltochelatase subunit CobN compare
PP_1672 -0.7 -3.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_5471 -0.7 -1.7 putative response regulator receiver protein compare
PP_4804 -0.7 -1.8 RlpA-like lipoprotein compare
PP_3789 -0.7 -3.4 putative Efflux transporter compare
PP_1678 -0.7 -2.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2880 -0.7 -2.0 Transcriptional regulator, TetR family compare
PP_1367 -0.7 -3.9 formyltetrahydrofolate hydrolase compare
PP_3484 -0.7 -2.8 Response regulator receiver protein compare
PP_1675 -0.7 -4.8 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3551 -0.7 -1.8 DNA-binding response regulator, LuxR family compare
PP_1783 -0.7 -1.3 dTDP-glucose pyrophosphorylase compare
PP_1362 -0.7 -2.6 pyruvate kinase II compare
PP_5033 -0.7 -5.1 Urocanate hydratase compare
PP_1366 -0.7 -0.5 Transcriptional regulator MvaT, P16 subunit compare
PP_0122 -0.7 -1.3 conserved exported protein of unknown function compare
PP_1697 -0.6 -2.7 transcriptional regulator, GntR family compare
PP_1493 -0.6 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4829 -0.6 -2.0 putative precorrin-3B synthase compare
PP_4977 -0.6 -4.8 5,10-methylenetetrahydrofolate reductase compare
PP_5047 -0.6 -2.6 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4827 -0.6 -4.5 Precorrin-2 C(20)-methyltransferase compare
PP_2253 -0.6 -1.2 Transcriptional regulator, GntR family compare
PP_1322 -0.6 -1.8 putative Lipoprotein compare
PP_1110 -0.6 -3.0 serine acetyltransferase compare
PP_4695 -0.6 -4.5 Sensory box histidine kinase compare
PP_0377 -0.6 -1.4 coenzyme PQQ synthesis protein D compare
PP_4832 -0.6 -1.5 Precorrin-6x reductase compare
PP_5216 -0.6 -1.4 exopolyphosphatase compare
PP_2375 -0.6 -4.9 cobalamin-dependent methionine synthase compare
PP_0261 -0.6 -3.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0376 -0.6 -4.6 Coenzyme PQQ synthesis protein E compare
PP_4993 -0.6 -2.1 Glutathione synthetase compare
PP_3102 -0.6 -2.1 conserved protein of unknown function compare
PP_1109 -0.6 -4.5 Transcriptional regulator, GntR family compare
PP_4199 -0.6 -1.0 putative Lipoprotein compare
PP_5230 -0.6 -2.2 Tyrosine recombinase XerC compare
PP_1304 -0.6 -4.1 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1009 -0.6 -2.7 glyceraldehyde-3-phosphate dehydrogenase compare
PP_1041 -0.6 -1.8 twin arginine protein export complex subunit compare
PP_5717 -0.6 -1.5 conserved protein of unknown function compare
PP_4379 -0.6 -3.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4098 -0.6 -1.0 UvrABC system protein C compare
PP_5031 -0.6 -4.1 proline (histidine) APC transporter compare
PP_1528 -0.6 -1.3 conserved protein of unknown function compare
PP_1676 -0.6 -3.2 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4247 -0.6 -1.5 Exonuclease compare
PP_1677 -0.6 -3.1 Adenosyl-cobyric acid synthase compare
PP_3392 -0.5 -1.3 conserved protein of unknown function compare
PP_3248 -0.5 -1.0 Dyp-type peroxidase family protein compare
PP_4826 -0.5 -2.7 Precorrin-3B C17-methyltransferase compare
PP_3946 -0.5 -1.0 HTH-type transcriptional repressor NicR compare
PP_4480 -0.5 -3.6 arginine N-succinyltransferase, subunit alpha compare
PP_5093 -0.5 -1.1 twitching motility protein compare
PP_4156 -0.5 -1.2 Transcriptional regulator, LysR family compare
PP_1215 -0.5 -0.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_1261 -0.5 -1.8 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_4004 -0.5 -1.4 DNA translocase FtsK compare
PP_0610 -0.5 -2.1 conserved exported protein of unknown function compare
PP_0003 -0.5 -1.7 16S RNA methyltransferase compare
PP_4902 -0.5 -1.0 Oligoribonuclease compare
PP_5350 -0.5 -2.2 Transcriptional regulator, RpiR family compare
PP_1303 -0.5 -3.5 Sulfate adenylyltransferase subunit 2 compare
PP_0775 -0.5 -0.9 conserved protein of unknown function compare
PP_4830 -0.5 -2.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_1111 -0.5 -3.4 putative Synthetase compare
PP_2322 -0.5 -2.5 Major outer membrane lipoprotein compare
PP_2348 -0.5 -1.9 Sensor histidine kinase compare
PP_0673 -0.5 -1.3 conserved protein of unknown function compare
PP_2217 -0.5 -1.8 enoyl-CoA hydratase compare
PP_0381 -0.5 -3.5 Coenzyme PQQ synthesis protein F compare
PP_4387 -0.5 -1.4 conserved exported protein of unknown function compare
PP_1589 -0.5 -3.4 uridylyltransferase compare
PP_5090 -0.5 -1.2 putative cell division protein compare
PP_4124 -0.5 -2.2 NADH-quinone oxidoreductase subunit G compare
PP_1063 -0.5 -3.7 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_2847 -0.5 -1.5 Urease accessory protein UreJ compare
PP_1346 -0.5 -2.3 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_5315 -0.5 -2.1 Rubredoxin-1 compare
PP_3539 -0.5 -1.9 putative Transcriptional regulator compare
PP_2929 -0.5 -2.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2624 -0.5 -2.1 conserved protein of unknown function compare
PP_2883 -0.5 -1.4 conserved protein of unknown function compare
PP_1368 -0.5 -2.8 putative membrane protein containing a glycosyltransferase domain compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Histidine in Pseudomonas putida KT2440

For nitrogen source L-Histidine across organisms