Experiment set27IT062 for Pseudomonas putida KT2440

Compare to:

L-Histidine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1988 -6.8 -10.4 3-isopropylmalate dehydrogenase compare
PP_1986 -6.7 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_1985 -6.7 -6.5 3-isopropylmalate dehydratase large subunit compare
PP_4679 -6.2 -9.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4723 -6.0 -15.2 Carbamoyl-phosphate synthase large chain compare
PP_4678 -6.0 -19.6 Ketol-acid reductoisomerase compare
PP_1995 -5.9 -13.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0422 -5.9 -8.9 Indole-3-glycerol phosphate synthase compare
PP_0082 -5.9 -8.0 tryptophan synthase alpha chain compare
PP_5185 -5.8 -8.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4724 -5.8 -8.9 Carbamoyl-phosphate synthase small chain compare
PP_1079 -5.8 -9.9 Ornithine carbamoyltransferase compare
PP_0420 -5.7 -16.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0083 -5.6 -8.6 tryptophan synthase beta chain compare
PP_4909 -5.6 -11.9 phosphoserine phosphatase compare
PP_0184 -5.5 -7.6 Argininosuccinate lyase compare
PP_1088 -5.5 -14.6 Argininosuccinate synthase compare
PP_3511 -5.5 -13.2 Branched-chain-amino-acid aminotransferase compare
PP_5075 -5.3 -19.0 glutamate synthase (NADPH) beta subunit compare
PP_0417 -5.1 -21.5 Anthranilate synthase component 1 compare
PP_2371 -5.0 -10.2 Sulphite reductase hemoprotein, beta subunit compare
PP_4680 -5.0 -19.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -4.7 -7.8 Acetylglutamate kinase compare
PP_3999 -4.6 -8.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1231 -4.6 -10.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5128 -4.6 -7.9 Dihydroxy-acid dehydratase compare
PP_0421 -4.4 -8.2 Anthranilate phosphoribosyltransferase compare
PP_5097 -4.4 -20.1 homoserine O-acetyltransferase compare
PP_5076 -4.3 -21.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_5155 -4.2 -6.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2001 -4.1 -9.9 O-succinylhomoserine sulfhydrylase compare
PP_5036 -4.1 -11.6 probable formiminoglutamate deiminase conserved
PP_5029 -4.0 -17.4 N-formylglutamate deformylase conserved
PP_0691 -3.9 -6.5 Glutamate 5-kinase compare
PP_1025 -3.8 -12.3 2-isopropylmalate synthase compare
PP_4999 -3.6 -2.5 dihydroorotase-like protein compare
PP_2370 -3.6 -4.5 conserved protein of unknown function compare
PP_0339 -3.6 -4.3 Pyruvate dehydrogenase E1 component compare
PP_5098 -3.6 -10.9 methionine biosynthesis protein MetW compare
PP_0787 -3.5 -5.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4700 -3.5 -4.7 pantothenate synthetase compare
PP_4696 -3.4 -9.0 Nitrogen regulation protein NR(I) compare
PP_5303 -3.4 -6.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2327 -3.3 -9.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1912 -3.0 -9.4 Phosphate acyltransferase compare
PP_1022 -2.7 -7.0 glucose 6-phosphate-1-dehydrogenase compare
PP_2328 -2.7 -9.0 Phosphoadenosine phosphosulfate reductase compare
PP_5030 -2.5 -8.6 Imidazolonepropionase conserved
PP_5346 -2.2 -10.4 pyruvate carboxylase subunit B compare
PP_5347 -2.1 -13.0 pyruvate carboxylase subunit A compare
PP_4693 -2.0 -5.2 RNA polymerase-binding transcription factor DksA compare
PP_4364 -2.0 -7.4 putative Anti-sigma F factor antagonist compare
PP_2168 -1.9 -11.4 Transaldolase compare
PP_3790 -1.9 -10.6 diaminopimelate epimerase compare
PP_0127 -1.9 -8.0 Thiol:disulfide interchange protein compare
PP_5348 -1.8 -10.8 Transcriptional regulator, LysR family compare
PP_0809 -1.8 -11.3 disulfide bond formation protein B compare
PP_5095 -1.8 -2.1 pyrroline-5-carboxylate reductase compare
PP_1215 -1.8 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_5104 -1.7 -8.8 thiazole synthase compare
PP_4964 -1.7 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_1217 -1.7 -5.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1733 -1.6 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_0164 -1.5 -6.4 conserved protein of unknown function compare
PP_4684 -1.4 -7.4 conserved protein of unknown function with kinase-like domain compare
PP_0362 -1.4 -11.0 Biotin synthase compare
PP_1426 -1.4 -11.1 L-aspartate oxidase compare
PP_5331 -1.4 -4.1 Long-chain acyl-CoA thioester hydrolase compare
PP_1233 -1.4 -5.9 sulfurtransferase compare
PP_1055 -1.4 -2.7 Type II secretion pathway protein GspN compare
PP_1468 -1.3 -3.3 Tyrosine recombinase XerD compare
PP_5048 -1.3 -5.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4782 -1.3 -4.5 Phosphomethylpyrimidine kinase compare
PP_4004 -1.3 -4.0 DNA translocase FtsK compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0393 -1.2 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1110 -1.2 -5.2 serine acetyltransferase compare
PP_0364 -1.2 -8.0 pimeloyl-[acp] methyl ester esterase compare
PP_1654 -1.1 -3.1 cysteine synthase B compare
PP_1367 -1.1 -6.1 formyltetrahydrofolate hydrolase compare
PP_3649 -1.1 -3.2 Transcriptional regulator, GntR family compare
PP_4984 -1.1 -8.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1629 -1.1 -4.0 Protein RecA compare
PP_4922 -1.1 -8.2 Phosphomethylpyrimidine synthase compare
PP_4699 -1.1 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0735 -1.1 -2.4 molybdopterin-synthase adenylyltransferase compare
PP_2414 -1.0 -0.9 conserved exported protein of unknown function compare
PP_0833 -1.0 -2.4 queuine tRNA-ribosyltransferase compare
PP_5227 -1.0 -6.5 diaminopimelate decarboxylase compare
PP_0363 -1.0 -7.7 8-amino-7-oxononanoate synthase compare
PP_5230 -1.0 -3.1 Tyrosine recombinase XerC compare
PP_4122 -1.0 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4387 -1.0 -3.8 conserved exported protein of unknown function compare
PP_0261 -0.9 -5.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0593 -0.9 -1.5 putative ribosome-binding factor compare
PP_0084 -0.9 -6.7 HTH-type transcriptional regulator TrpI compare
PP_0365 -0.9 -6.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3098 -0.9 -1.8 conserved protein of unknown function compare
PP_2307 -0.9 -2.3 conserved protein of unknown function compare
PP_4910 -0.9 -1.7 conserved protein of unknown function compare
PP_3484 -0.9 -3.0 Response regulator receiver protein compare
PP_1824 -0.9 -1.7 Smr domain protein compare
PP_1348 -0.9 -4.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5338 -0.9 -1.6 aspartate ammonia-lyase compare
PP_3519 -0.9 -1.5 putative Lipoprotein compare
PP_3105 -0.8 -2.7 conserved membrane protein of unknown function compare
PP_0366 -0.8 -5.4 dethiobiotin synthetase compare
PP_5350 -0.8 -2.6 Transcriptional regulator, RpiR family compare
PP_1589 -0.8 -4.8 uridylyltransferase compare
PP_1528 -0.8 -1.4 conserved protein of unknown function compare
PP_4829 -0.8 -2.2 putative precorrin-3B synthase compare
PP_4126 -0.8 -1.8 NADH-quinone oxidoreductase subunit I compare
PP_3507 -0.8 -6.1 Aerobic cobaltochelatase subunit CobN compare
PP_1216 -0.8 -1.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4977 -0.8 -6.1 5,10-methylenetetrahydrofolate reductase compare
PP_4199 -0.8 -1.2 putative Lipoprotein compare
PP_4832 -0.8 -3.6 Precorrin-6x reductase compare
PP_4827 -0.7 -5.3 Precorrin-2 C(20)-methyltransferase compare
PP_2378 -0.7 -1.4 Fe/S biogenesis protein NfuA compare
PP_5033 -0.7 -5.9 Urocanate hydratase compare
PP_0846 -0.7 -1.5 DnaK-like molecular chaperone specific for IscU compare
PP_1678 -0.7 -2.3 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1672 -0.7 -3.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0377 -0.7 -2.0 coenzyme PQQ synthesis protein D compare
PP_1734 -0.7 -1.9 Probable septum site-determining protein MinC compare
PP_3892 -0.7 -1.9 conserved protein of unknown function compare
PP_2322 -0.7 -3.2 Major outer membrane lipoprotein compare
PP_4695 -0.7 -4.9 Sensory box histidine kinase compare
PP_5628 -0.7 -1.5 conserved protein of unknown function compare
PP_1770 -0.7 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1677 -0.7 -3.0 Adenosyl-cobyric acid synthase compare
PP_1681 -0.7 -4.7 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1679 -0.7 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1845 -0.7 -2.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_3789 -0.7 -3.1 putative Efflux transporter compare
PP_4826 -0.7 -3.5 Precorrin-3B C17-methyltransferase compare
PP_1128 -0.7 -2.3 OmpA family protein compare
PP_1109 -0.6 -5.1 Transcriptional regulator, GntR family compare
PP_4828 -0.6 -1.2 Precorrin-8X methylmutase compare
PP_1676 -0.6 -3.7 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1575 -0.6 -1.2 conserved protein of unknown function compare
PP_2928 -0.6 -4.2 Saccharopine dehydrogenase compare
PP_4917 -0.6 -1.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4993 -0.6 -2.3 Glutathione synthetase compare
PP_2794 -0.6 -2.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3505 -0.6 -2.0 conserved protein of unknown function compare
PP_1783 -0.6 -1.2 dTDP-glucose pyrophosphorylase compare
PP_1553 -0.6 -1.6 conserved protein of unknown function compare
PP_1268 -0.6 -1.8 putative HtrA suppressor protein sohA compare
PP_4018 -0.6 -2.4 Acetyltransferase, GNAT family compare
PP_4895 -0.6 -1.8 tRNA dimethylallyltransferase compare
PP_2929 -0.6 -3.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4880 -0.6 -2.3 exoribonuclease R compare
PP_1675 -0.6 -4.0 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5047 -0.6 -1.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1656 -0.6 -3.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_4481 -0.6 -3.5 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_0378 -0.6 -4.0 Pyrroloquinoline-quinone synthase compare
PP_4379 -0.6 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4480 -0.6 -3.9 arginine N-succinyltransferase, subunit alpha compare
PP_5028 -0.6 -2.3 proline iminopeptidase compare
PP_2375 -0.6 -4.8 cobalamin-dependent methionine synthase compare
PP_5328 -0.6 -1.5 putative phosphate transport system permease protein compare
PP_3506 -0.6 -2.4 Magnesium chelatase, subunit ChII compare
PP_4130 -0.5 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4944 -0.5 -1.9 Carbamoyltransferase compare
PP_4124 -0.5 -2.3 NADH-quinone oxidoreductase subunit G compare
PP_3971 -0.5 -1.4 conserved protein of unknown function compare
PP_1293 -0.5 -0.8 molybdopterin synthase small subunit compare
PP_2177 -0.5 -2.7 putative transcriptional regulator compare
PP_5216 -0.5 -1.4 exopolyphosphatase compare
PP_1362 -0.5 -2.1 pyruvate kinase II compare
PP_1304 -0.5 -3.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1637 -0.5 -2.0 Transcriptional regulator, LysR family compare
PP_1493 -0.5 -1.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_t57 -0.5 -2.9 tRNA-Arg compare
PP_1063 -0.5 -4.1 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_1303 -0.5 -2.9 Sulfate adenylyltransferase subunit 2 compare
PP_4722 -0.5 -2.4 Transcription elongation factor GreA compare
PP_2081 -0.5 -3.1 putative phosphoenolpyruvate synthase regulatory protein compare
PP_5034 -0.5 -3.4 Uncharacterized 21.2 kDa protein in hutC 3'region compare
PP_1994 -0.5 -0.9 tRNA pseudouridine (38-40)synthase compare
PP_5032 -0.5 -3.3 Histidine ammonia-lyase compare
PP_0484 -0.5 -3.0 transporter of an unknown substrate compare
PP_1111 -0.5 -3.5 putative Synthetase compare
PP_2031 -0.5 -1.7 conserved protein of unknown function compare
PP_5678 -0.5 -2.3 protein of unknown function compare
PP_4952 -0.5 -1.5 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2580 -0.5 -1.6 conserved protein of unknown function compare
PP_4120 -0.5 -1.9 NADH-quinone oxidoreductase subunit B compare
PP_0914 -0.5 -3.8 GGDEF domain protein compare
PP_1020 -0.5 -1.2 putative glucose-6-phosphate 1-epimerase compare
PP_5090 -0.5 -1.1 putative cell division protein compare
PP_0352 -0.5 -2.5 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_5031 -0.5 -3.9 proline (histidine) APC transporter compare
PP_0612 -0.5 -3.5 FAD-dependent glycine/D-amino acid oxidase compare
PP_0401 -0.5 -1.0 Ribosomal RNA small subunit methyltransferase A compare
PP_5203 -0.5 -3.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_3787 -0.5 -3.4 conserved protein of unknown function compare
PP_1142 -0.5 -1.0 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Histidine in Pseudomonas putida KT2440

For nitrogen source L-Histidine across organisms