Experiment set27IT061 for Pseudomonas putida KT2440

Compare to:

L-Valine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.3 -5.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0082 -6.3 -6.2 tryptophan synthase alpha chain compare
PP_5185 -6.2 -6.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0083 -5.6 -8.6 tryptophan synthase beta chain compare
PP_0967 -5.5 -15.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1995 -5.4 -13.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2168 -5.3 -16.0 Transaldolase compare
PP_0290 -5.3 -10.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5048 -5.2 -7.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1079 -4.9 -9.6 Ornithine carbamoyltransferase compare
PP_4723 -4.8 -18.1 Carbamoyl-phosphate synthase large chain compare
PP_0292 -4.8 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4696 -4.8 -7.9 Nitrogen regulation protein NR(I) compare
PP_3511 -4.7 -12.9 Branched-chain-amino-acid aminotransferase compare
PP_1088 -4.7 -15.3 Argininosuccinate synthase compare
PP_2371 -4.7 -9.4 Sulphite reductase hemoprotein, beta subunit compare
PP_5014 -4.7 -7.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_5289 -4.6 -7.0 Acetylglutamate kinase compare
PP_4678 -4.5 -18.2 Ketol-acid reductoisomerase compare
PP_0184 -4.4 -9.8 Argininosuccinate lyase compare
PP_3999 -4.4 -8.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5047 -4.4 -9.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5015 -4.4 -7.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5098 -4.3 -12.2 methionine biosynthesis protein MetW compare
PP_1231 -4.3 -8.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0289 -4.3 -7.8 Imidazoleglycerol-phosphate dehydratase compare
PP_0422 -4.2 -8.3 Indole-3-glycerol phosphate synthase compare
PP_0966 -4.2 -16.9 Histidinol dehydrogenase compare
PP_1985 -4.1 -7.6 3-isopropylmalate dehydratase large subunit compare
PP_2337 -4.1 -4.9 aconitate isomerase compare
PP_1589 -4.1 -12.9 uridylyltransferase compare
PP_4909 -4.1 -12.0 phosphoserine phosphatase compare
PP_5097 -4.1 -17.9 homoserine O-acetyltransferase compare
PP_0965 -4.1 -12.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5346 -4.0 -9.5 pyruvate carboxylase subunit B compare
PP_0417 -4.0 -18.9 Anthranilate synthase component 1 compare
PP_4724 -4.0 -10.2 Carbamoyl-phosphate synthase small chain compare
PP_0420 -3.9 -15.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0421 -3.8 -7.6 Anthranilate phosphoribosyltransferase compare
PP_2336 -3.7 -5.6 aconitate hydratase 1 compare
PP_2001 -3.6 -11.2 O-succinylhomoserine sulfhydrylase compare
PP_5095 -3.6 -2.4 pyrroline-5-carboxylate reductase compare
PP_2088 -3.5 -5.1 RNA polymerase sigma factor SigX compare
PP_4890 -3.5 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_4364 -3.4 -7.5 putative Anti-sigma F factor antagonist compare
PP_2370 -3.4 -3.2 conserved protein of unknown function compare
PP_1986 -3.4 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_1988 -3.3 -11.9 3-isopropylmalate dehydrogenase compare
PP_5348 -3.3 -11.4 Transcriptional regulator, LysR family compare
PP_4680 -3.3 -18.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -3.3 -10.3 Dihydroxy-acid dehydratase compare
PP_5188 -3.2 -6.9 putative transcriptional regulator (AsnC/Lrp family) conserved
PP_2328 -3.1 -8.4 Phosphoadenosine phosphosulfate reductase compare
PP_5155 -3.0 -3.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5347 -3.0 -12.6 pyruvate carboxylase subunit A compare
PP_0339 -3.0 -5.7 Pyruvate dehydrogenase E1 component compare
PP_0787 -2.9 -4.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2327 -2.9 -7.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4999 -2.9 -2.8 dihydroorotase-like protein compare
PP_0642 -2.8 -8.1 conserved membrane protein of unknown function compare
PP_1994 -2.3 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_2378 -2.2 -3.2 Fe/S biogenesis protein NfuA compare
PP_0291 -2.1 -2.5 conserved protein of unknown function compare
PP_2217 -2.0 -3.4 enoyl-CoA hydratase compare
PP_0164 -2.0 -8.3 conserved protein of unknown function compare
PP_0362 -2.0 -12.6 Biotin synthase compare
PP_4700 -2.0 -4.3 pantothenate synthetase compare
PP_5350 -1.8 -5.9 Transcriptional regulator, RpiR family compare
PP_4693 -1.8 -5.7 RNA polymerase-binding transcription factor DksA compare
PP_1022 -1.8 -6.2 glucose 6-phosphate-1-dehydrogenase compare
PP_1217 -1.7 -5.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5452 -1.7 -5.3 protein of unknown function compare
PP_0691 -1.6 -4.6 Glutamate 5-kinase compare
PP_0364 -1.5 -10.1 pimeloyl-[acp] methyl ester esterase compare
PP_4984 -1.5 -10.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4668 -1.5 -11.0 Transcriptional regulator, LysR family conserved
PP_2334 -1.5 -3.8 2-methylisocitrate lyase compare
PP_0363 -1.5 -9.6 8-amino-7-oxononanoate synthase compare
PP_1764 -1.4 -7.0 Phosphoglycolate phosphatase 2 compare
PP_4004 -1.4 -3.6 DNA translocase FtsK compare
PP_0406 -1.3 -5.6 Nucleotidyltransferase family protein compare
PP_4401 -1.3 -7.9 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit conserved
PP_5227 -1.3 -7.5 diaminopimelate decarboxylase compare
PP_0365 -1.3 -8.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0833 -1.3 -2.2 queuine tRNA-ribosyltransferase compare
PP_1362 -1.3 -4.8 pyruvate kinase II compare
PP_4828 -1.3 -1.3 Precorrin-8X methylmutase compare
PP_0366 -1.2 -7.2 dethiobiotin synthetase compare
PP_4400 -1.2 -6.5 Bkd operon transcriptional regulator compare
PP_4402 -1.2 -9.3 branched-chain alpha-keto acid dehydrogenase complex, beta subunit conserved
PP_4143 -1.2 -5.2 conserved protein of unknown function compare
PP_5303 -1.2 -4.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4403 -1.2 -8.0 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_1215 -1.2 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1142 -1.2 -2.0 conserved protein of unknown function compare
PP_4722 -1.1 -4.7 Transcription elongation factor GreA compare
PP_1912 -1.1 -4.4 Phosphate acyltransferase compare
PP_2031 -1.1 -3.2 conserved protein of unknown function compare
PP_0001 -1.1 -1.7 probable chromosome-partitioning protein compare
PP_5149 -1.1 -8.6 threonine deaminase compare
PP_2302 -1.1 -5.9 DNA-binding, ATP-dependent protease compare
PP_0127 -1.1 -5.3 Thiol:disulfide interchange protein compare
PP_4964 -1.1 -2.4 D-erythrose 4-phosphate dehydrogenase compare
PP_3492 -1.1 -6.7 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) conserved
PP_1654 -1.1 -3.9 cysteine synthase B compare
PP_3491 -1.0 -6.8 Enoly-coenzyme A hydratase/isomerase family protein conserved
PP_1025 -1.0 -8.1 2-isopropylmalate synthase compare
PP_1216 -1.0 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0393 -1.0 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5035 -1.0 -6.0 Histidine utilization repressor compare
PP_3510 -1.0 -4.1 conserved protein of unknown function compare
PP_3790 -1.0 -6.4 diaminopimelate epimerase compare
PP_0434 -0.9 -6.1 Anhydro-N-acetylmuramic acid kinase compare
PP_4667 -0.9 -6.3 methylmalonate-semialdehyde dehydrogenase compare
PP_4782 -0.9 -5.0 Phosphomethylpyrimidine kinase compare
PP_5114 -0.9 -1.4 putative adenine methyltransferase compare
PP_3505 -0.9 -2.7 conserved protein of unknown function compare
PP_3649 -0.9 -2.7 Transcriptional regulator, GntR family compare
PP_4666 -0.9 -3.9 3-hydroxyisobutyrate dehydrogenase compare
PP_0435 -0.9 -6.3 Peptidase, M23/M37 family compare
PP_0719 -0.8 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2388 -0.8 -3.3 Transporter, LysE family compare
PP_5328 -0.8 -2.1 putative phosphate transport system permease protein compare
PP_1426 -0.8 -6.7 L-aspartate oxidase compare
PP_1355 -0.8 -7.3 Muropeptide permease AmpG compare
PP_5028 -0.8 -2.9 proline iminopeptidase compare
PP_5279 -0.8 -2.3 conserved protein of unknown function compare
PP_1664 -0.8 -2.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_1293 -0.8 -1.3 molybdopterin synthase small subunit compare
PP_1734 -0.8 -1.9 Probable septum site-determining protein MinC compare
PP_5528 -0.8 -1.2 conserved protein of unknown function compare
PP_1468 -0.8 -1.7 Tyrosine recombinase XerD compare
PP_1553 -0.8 -1.7 conserved protein of unknown function compare
PP_5104 -0.8 -5.4 thiazole synthase compare
PP_4404 -0.8 -5.4 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_2972 -0.8 -1.2 conserved protein of unknown function compare
PP_2142 -0.8 -2.6 Cell division inhibitor SulA compare
PP_1493 -0.8 -1.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2145 -0.8 -4.0 beta-N-acetylglucosaminidase compare
PP_0405 -0.8 -6.3 conserved protein of unknown function compare
PP_4988 -0.8 -3.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1677 -0.7 -3.6 Adenosyl-cobyric acid synthase compare
PP_3730 -0.7 -1.5 Transcriptional regulatory protein AruR compare
PP_2390 -0.7 -4.0 Transcriptional regulator, LysR family compare
PP_1233 -0.7 -3.4 sulfurtransferase compare
PP_4832 -0.7 -2.9 Precorrin-6x reductase compare
PP_1826 -0.7 -2.4 Hydrolase, isochorismatase family compare
PP_3789 -0.7 -4.0 putative Efflux transporter compare
PP_1127 -0.7 -4.6 Carboxylesterase compare
PP_4910 -0.7 -1.2 conserved protein of unknown function compare
PP_2137 -0.7 -2.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_4695 -0.7 -5.2 Sensory box histidine kinase compare
PP_4824 -0.7 -3.2 Sensor histidine kinase/response regulator compare
PP_1020 -0.7 -2.2 putative glucose-6-phosphate 1-epimerase compare
PP_2029 -0.7 -1.7 von Willebrand factor type A domain protein compare
PP_0940 -0.7 -5.0 putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD compare
PP_0914 -0.7 -4.9 GGDEF domain protein compare
PP_4829 -0.6 -2.4 putative precorrin-3B synthase compare
PP_0345 -0.6 -1.7 putative Heptose kinase WapP compare
PP_5217 -0.6 -5.8 Polyphosphate kinase compare
PP_4073 -0.6 -2.6 conserved exported protein of unknown function compare
PP_4387 -0.6 -2.1 conserved exported protein of unknown function compare
PP_5652 -0.6 -2.1 conserved protein of unknown function, phage origin compare
PP_5241 -0.6 -1.3 DNA-binding response regulator, LuxR family compare
PP_3105 -0.6 -1.6 conserved membrane protein of unknown function compare
PP_0942 -0.6 -4.3 regulatory protease compare
PP_2214 -0.6 -2.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4546 -0.6 -2.3 ATP-dependent helicase HrpA compare
PP_5315 -0.6 -2.9 Rubredoxin-1 compare
PP_3392 -0.6 -1.9 conserved protein of unknown function compare
PP_t10 -0.6 -1.4 tRNA-Pro compare
PP_1575 -0.6 -1.9 conserved protein of unknown function compare
PP_5628 -0.6 -1.4 conserved protein of unknown function compare
PP_5216 -0.6 -1.2 exopolyphosphatase compare
PP_1048 -0.6 -1.7 putative protein secretion protein for export compare
PP_1299 -0.6 -3.4 putative amino acid ABC transporter - membrane subunit compare
PP_5600 -0.6 -2.0 conserved protein of unknown function compare
PP_1387 -0.6 -3.0 Probable HTH-type transcriptional regulator TtgR compare
PP_4238 -0.6 -2.0 conserved protein of unknown function compare
PP_1141 -0.6 -3.8 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_1678 -0.6 -1.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0888 -0.6 -1.0 Photosynthetic apparatus regulatory protein RegA compare
PP_4296 -0.6 -1.5 conserved exported protein of unknown function compare
PP_0260 -0.5 -3.2 ADP-sugar pyrophosphorylase compare
PP_4480 -0.5 -3.7 arginine N-succinyltransferase, subunit alpha compare
PP_5456 -0.5 -1.5 conserved protein of unknown function compare
PP_4944 -0.5 -1.8 Carbamoyltransferase compare
PP_5008 -0.5 -0.6 Poly granule-associated protein compare
PP_1138 -0.5 -2.7 branched chain amino acid transporter - ATP binding subunit compare
PP_5198 -0.5 -1.1 conserved protein of unknown function compare
PP_3637 -0.5 -1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1872 -0.5 -3.9 glutamate-pyruvate aminotransferase compare
PP_2081 -0.5 -3.7 putative phosphoenolpyruvate synthase regulatory protein compare
PP_3938 -0.5 -1.5 conserved protein of unknown function compare
PP_0195 -0.5 -1.9 conserved protein of unknown function compare
PP_1128 -0.5 -1.7 OmpA family protein compare
PP_1036 -0.5 -2.2 membrane-bound lytic murein transglycosylase F compare
PP_5230 -0.5 -1.8 Tyrosine recombinase XerC compare
PP_4223 -0.5 -1.7 diaminobutyrate-2-oxoglutarate transaminase compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source L-Valine in Pseudomonas putida KT2440

For nitrogen source L-Valine across organisms