Experiment set27IT060 for Pseudomonas putida KT2440

Compare to:

L-Valine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0966 -6.5 -14.0 Histidinol dehydrogenase compare
PP_0082 -6.1 -5.9 tryptophan synthase alpha chain compare
PP_0083 -6.0 -5.8 tryptophan synthase beta chain compare
PP_0290 -5.9 -10.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0184 -5.6 -6.6 Argininosuccinate lyase compare
PP_1995 -5.0 -11.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5185 -5.0 -8.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1088 -4.9 -14.4 Argininosuccinate synthase compare
PP_2337 -4.8 -3.3 aconitate isomerase compare
PP_4890 -4.8 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_2168 -4.8 -15.0 Transaldolase compare
PP_4909 -4.8 -12.3 phosphoserine phosphatase compare
PP_0420 -4.8 -15.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0421 -4.7 -8.7 Anthranilate phosphoribosyltransferase compare
PP_0967 -4.7 -14.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2328 -4.7 -7.8 Phosphoadenosine phosphosulfate reductase compare
PP_0422 -4.7 -8.7 Indole-3-glycerol phosphate synthase compare
PP_5048 -4.4 -7.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4723 -4.4 -17.0 Carbamoyl-phosphate synthase large chain compare
PP_2371 -4.3 -9.2 Sulphite reductase hemoprotein, beta subunit compare
PP_3511 -4.3 -10.6 Branched-chain-amino-acid aminotransferase compare
PP_1589 -4.3 -11.7 uridylyltransferase compare
PP_0417 -4.2 -19.5 Anthranilate synthase component 1 compare
PP_0289 -4.2 -7.4 Imidazoleglycerol-phosphate dehydratase compare
PP_0293 -4.1 -4.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5097 -4.1 -17.5 homoserine O-acetyltransferase compare
PP_1079 -4.1 -9.4 Ornithine carbamoyltransferase compare
PP_0292 -4.1 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0965 -4.0 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5047 -4.0 -8.5 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4364 -4.0 -7.9 putative Anti-sigma F factor antagonist compare
PP_5014 -4.0 -5.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_5289 -3.9 -6.8 Acetylglutamate kinase compare
PP_4724 -3.9 -9.0 Carbamoyl-phosphate synthase small chain compare
PP_2336 -3.8 -5.2 aconitate hydratase 1 compare
PP_4678 -3.8 -17.6 Ketol-acid reductoisomerase compare
PP_5347 -3.8 -13.7 pyruvate carboxylase subunit A compare
PP_2088 -3.8 -8.1 RNA polymerase sigma factor SigX compare
PP_5098 -3.8 -10.5 methionine biosynthesis protein MetW compare
PP_1231 -3.6 -7.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5155 -3.6 -5.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2001 -3.6 -9.5 O-succinylhomoserine sulfhydrylase compare
PP_4680 -3.4 -18.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5015 -3.4 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5346 -3.4 -10.3 pyruvate carboxylase subunit B compare
PP_4999 -3.4 -2.3 dihydroorotase-like protein compare
PP_3999 -3.3 -9.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1988 -3.3 -12.3 3-isopropylmalate dehydrogenase compare
PP_2217 -3.3 -4.6 enoyl-CoA hydratase compare
PP_2370 -3.3 -4.5 conserved protein of unknown function compare
PP_0339 -3.2 -4.8 Pyruvate dehydrogenase E1 component compare
PP_5188 -3.1 -7.2 putative transcriptional regulator (AsnC/Lrp family) conserved
PP_5128 -3.1 -9.4 Dihydroxy-acid dehydratase compare
PP_5348 -3.0 -10.4 Transcriptional regulator, LysR family compare
PP_4696 -2.9 -7.8 Nitrogen regulation protein NR(I) compare
PP_0787 -2.8 -7.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1986 -2.7 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_2327 -2.7 -9.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0642 -2.7 -7.3 conserved membrane protein of unknown function compare
PP_0164 -2.7 -8.5 conserved protein of unknown function compare
PP_1985 -2.7 -7.4 3-isopropylmalate dehydratase large subunit compare
PP_0691 -2.3 -4.1 Glutamate 5-kinase compare
PP_5328 -2.0 -3.0 putative phosphate transport system permease protein compare
PP_1022 -2.0 -6.5 glucose 6-phosphate-1-dehydrogenase compare
PP_5350 -2.0 -4.1 Transcriptional regulator, RpiR family compare
PP_0362 -1.8 -11.9 Biotin synthase compare
PP_1215 -1.7 -2.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_5452 -1.7 -4.0 protein of unknown function compare
PP_0364 -1.6 -9.2 pimeloyl-[acp] methyl ester esterase compare
PP_4700 -1.6 -3.5 pantothenate synthetase compare
PP_1142 -1.5 -2.2 conserved protein of unknown function compare
PP_4693 -1.5 -4.7 RNA polymerase-binding transcription factor DksA compare
PP_1216 -1.5 -3.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5230 -1.5 -4.2 Tyrosine recombinase XerC compare
PP_1217 -1.5 -4.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0291 -1.5 -1.8 conserved protein of unknown function compare
PP_4828 -1.5 -2.3 Precorrin-8X methylmutase compare
PP_4984 -1.4 -9.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0366 -1.4 -7.4 dethiobiotin synthetase compare
PP_0363 -1.4 -8.7 8-amino-7-oxononanoate synthase compare
PP_4668 -1.4 -8.8 Transcriptional regulator, LysR family conserved
PP_4403 -1.3 -8.3 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_4401 -1.3 -6.6 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit conserved
PP_0365 -1.3 -7.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4004 -1.3 -3.7 DNA translocase FtsK compare
PP_0888 -1.3 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_5227 -1.3 -7.1 diaminopimelate decarboxylase compare
PP_1764 -1.2 -6.0 Phosphoglycolate phosphatase 2 compare
PP_0127 -1.2 -5.9 Thiol:disulfide interchange protein compare
PP_1493 -1.2 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3491 -1.2 -7.2 Enoly-coenzyme A hydratase/isomerase family protein conserved
PP_4143 -1.2 -4.3 conserved protein of unknown function compare
PP_2302 -1.1 -4.7 DNA-binding, ATP-dependent protease compare
PP_4799 -1.1 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2388 -1.1 -3.8 Transporter, LysE family compare
PP_1664 -1.1 -3.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_4402 -1.1 -7.2 branched-chain alpha-keto acid dehydrogenase complex, beta subunit conserved
PP_3492 -1.1 -6.3 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) conserved
PP_4400 -1.1 -6.1 Bkd operon transcriptional regulator compare
PP_5149 -1.0 -7.2 threonine deaminase compare
PP_0435 -1.0 -7.7 Peptidase, M23/M37 family compare
PP_5303 -1.0 -4.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1025 -1.0 -6.8 2-isopropylmalate synthase compare
PP_1355 -1.0 -8.0 Muropeptide permease AmpG compare
PP_2334 -0.9 -2.9 2-methylisocitrate lyase compare
PP_5104 -0.9 -5.7 thiazole synthase compare
PP_0406 -0.9 -4.0 Nucleotidyltransferase family protein compare
PP_3790 -0.9 -6.0 diaminopimelate epimerase compare
PP_t29 -0.9 -1.2 tRNA-Ala compare
PP_4404 -0.9 -5.2 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_3510 -0.9 -3.8 conserved protein of unknown function compare
PP_5028 -0.9 -2.7 proline iminopeptidase compare
PP_3649 -0.9 -1.8 Transcriptional regulator, GntR family compare
PP_0261 -0.9 -5.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0434 -0.9 -5.7 Anhydro-N-acetylmuramic acid kinase compare
PP_1912 -0.9 -3.8 Phosphate acyltransferase compare
PP_1036 -0.8 -3.2 membrane-bound lytic murein transglycosylase F compare
PP_3098 -0.8 -1.5 conserved protein of unknown function compare
PP_4666 -0.8 -3.8 3-hydroxyisobutyrate dehydrogenase compare
PP_1366 -0.8 -1.5 Transcriptional regulator MvaT, P16 subunit compare
PP_5017 -0.8 -1.6 Sec-independent protein translocase protein TatB compare
PP_1994 -0.8 -1.2 tRNA pseudouridine (38-40)synthase compare
PP_4667 -0.8 -5.5 methylmalonate-semialdehyde dehydrogenase compare
PP_4722 -0.8 -2.5 Transcription elongation factor GreA compare
PP_2030 -0.8 -3.3 conserved protein of unknown function compare
PP_5039 -0.8 -2.4 conserved protein of unknown function compare
PP_1426 -0.8 -5.9 L-aspartate oxidase compare
PP_4964 -0.8 -1.7 D-erythrose 4-phosphate dehydrogenase compare
PP_1672 -0.8 -3.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_2214 -0.8 -3.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1268 -0.8 -2.4 putative HtrA suppressor protein sohA compare
PP_3892 -0.7 -1.8 conserved protein of unknown function compare
PP_5035 -0.7 -4.0 Histidine utilization repressor compare
PP_5338 -0.7 -1.4 aspartate ammonia-lyase compare
PP_5216 -0.7 -2.4 exopolyphosphatase compare
PP_4268 -0.7 -1.7 nucleoid-associated broad specificity regulator compare
PP_2145 -0.7 -2.7 beta-N-acetylglucosaminidase compare
PP_4824 -0.7 -3.6 Sensor histidine kinase/response regulator compare
PP_0405 -0.7 -5.9 conserved protein of unknown function compare
PP_1654 -0.7 -1.6 cysteine synthase B compare
PP_5236 -0.7 -5.2 conserved protein of unknown function compare
PP_3505 -0.7 -1.9 conserved protein of unknown function compare
PP_0735 -0.7 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_0940 -0.7 -5.1 putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD compare
PP_4593 -0.7 -1.3 conserved protein of unknown function compare
PP_1038 -0.7 -2.4 conserved protein of unknown function compare
PP_2345 -0.7 -2.7 conserved exported protein of unknown function compare
PP_5217 -0.7 -5.9 Polyphosphate kinase compare
PP_1127 -0.7 -4.4 Carboxylesterase compare
PP_0914 -0.7 -4.8 GGDEF domain protein compare
PP_2403 -0.7 -1.2 Chemotaxis protein CheY compare
PP_4122 -0.7 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1233 -0.6 -2.9 sulfurtransferase compare
PP_5095 -0.6 -0.8 pyrroline-5-carboxylate reductase compare
PP_4977 -0.6 -5.1 5,10-methylenetetrahydrofolate reductase compare
PP_1300 -0.6 -3.2 putative amino acid ABC transporter - ATP-binding subunit compare
PP_5423 -0.6 -2.2 conserved membrane protein of unknown function compare
PP_0941 -0.6 -3.0 putative ribosome associated protein compare
PP_3971 -0.6 -1.4 conserved protein of unknown function compare
PP_3789 -0.6 -3.7 putative Efflux transporter compare
PP_5073 -0.6 -1.4 conserved exported protein of unknown function compare
PP_3506 -0.6 -2.2 Magnesium chelatase, subunit ChII compare
PP_4910 -0.6 -1.0 conserved protein of unknown function compare
PP_2402 -0.6 -1.2 putative Sensor histidine kinase compare
PP_4387 -0.6 -1.6 conserved exported protein of unknown function compare
PP_1362 -0.6 -2.1 pyruvate kinase II compare
PP_0942 -0.6 -4.3 regulatory protease compare
PP_0273 -0.6 -2.1 conserved protein of unknown function compare
PP_1404 -0.6 -1.8 conserved protein of unknown function compare
PP_0556 -0.6 -2.5 Acetoin catabolism protein compare
PP_3637 -0.6 -1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2847 -0.6 -0.9 Urease accessory protein UreJ compare
PP_1348 -0.6 -2.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4340 -0.6 -2.7 response regulator for chemotactic signal transduction compare
PP_5202 -0.6 -1.6 putative cell division protein compare
PP_0673 -0.6 -1.3 conserved protein of unknown function compare
PP_2976 -0.6 -1.4 putative transposase compare
PP_4695 -0.6 -4.0 Sensory box histidine kinase compare
PP_0980 -0.6 -2.9 Probable cytosol aminopeptidase compare
PP_0063 -0.5 -1.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0381 -0.5 -3.1 Coenzyme PQQ synthesis protein F compare
PP_4944 -0.5 -1.7 Carbamoyltransferase compare
PP_4424 -0.5 -1.3 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_3508 -0.5 -2.0 Protein CobW compare
PP_2028 -0.5 -2.0 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_1770 -0.5 -1.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_2720 -0.5 -1.1 conserved protein of unknown function compare
PP_2631 -0.5 -1.6 putative cellulose biosynthesis, BcsF/YhjT compare
PP_3821 -0.5 -3.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5582 -0.5 -1.1 conserved protein of unknown function compare
PP_1468 -0.5 -1.2 Tyrosine recombinase XerD compare
PP_1198 -0.5 -2.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4988 -0.5 -2.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4073 -0.5 -1.9 conserved exported protein of unknown function compare
PP_3258 -0.5 -1.5 conserved protein of unknown function compare
PP_3398 -0.5 -1.8 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4546 -0.5 -1.9 ATP-dependent helicase HrpA compare
PP_2118 -0.5 -1.1 conserved protein of unknown function compare
PP_0484 -0.5 -3.3 transporter of an unknown substrate compare
PP_3198 -0.5 -1.2 Ferredoxin, 2Fe-2S compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source L-Valine in Pseudomonas putida KT2440

For nitrogen source L-Valine across organisms