Experiment set27IT052 for Pseudomonas putida KT2440

Compare to:

L-Asparagine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4909 -6.0 -10.0 phosphoserine phosphatase compare
PP_5014 -6.0 -5.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_0083 -5.8 -7.9 tryptophan synthase beta chain compare
PP_4724 -5.7 -8.8 Carbamoyl-phosphate synthase small chain compare
PP_1079 -5.7 -8.6 Ornithine carbamoyltransferase compare
PP_0292 -5.6 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1988 -5.5 -12.7 3-isopropylmalate dehydrogenase compare
PP_0290 -5.5 -12.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -5.3 -9.5 tryptophan synthase alpha chain compare
PP_0787 -5.2 -6.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4723 -5.1 -17.3 Carbamoyl-phosphate synthase large chain compare
PP_0967 -5.1 -16.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -5.0 -20.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -5.0 -14.5 Histidinol dehydrogenase compare
PP_4679 -5.0 -10.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -4.9 -20.4 Ketol-acid reductoisomerase compare
PP_3511 -4.9 -12.2 Branched-chain-amino-acid aminotransferase compare
PP_0691 -4.8 -5.7 Glutamate 5-kinase compare
PP_0417 -4.6 -21.7 Anthranilate synthase component 1 compare
PP_5289 -4.6 -7.6 Acetylglutamate kinase compare
PP_1986 -4.5 -5.0 3-isopropylmalate dehydratase small subunit compare
PP_1088 -4.4 -15.7 Argininosuccinate synthase compare
PP_0422 -4.4 -8.2 Indole-3-glycerol phosphate synthase compare
PP_5098 -4.4 -11.3 methionine biosynthesis protein MetW compare
PP_1995 -4.4 -11.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0293 -4.3 -5.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0420 -4.3 -14.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0184 -4.3 -9.6 Argininosuccinate lyase compare
PP_0289 -4.1 -8.9 Imidazoleglycerol-phosphate dehydratase compare
PP_2371 -4.1 -10.4 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -4.1 -9.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4890 -4.0 -8.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_1022 -4.0 -8.0 glucose 6-phosphate-1-dehydrogenase compare
PP_5097 -3.9 -16.0 homoserine O-acetyltransferase compare
PP_0421 -3.9 -7.9 Anthranilate phosphoribosyltransferase compare
PP_0965 -3.9 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -3.9 -8.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5155 -3.7 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1985 -3.6 -6.8 3-isopropylmalate dehydratase large subunit compare
PP_5015 -3.6 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1231 -3.6 -8.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2001 -3.6 -13.1 O-succinylhomoserine sulfhydrylase compare
PP_4999 -3.6 -2.4 dihydroorotase-like protein compare
PP_0339 -3.6 -4.2 Pyruvate dehydrogenase E1 component compare
PP_5128 -3.5 -9.7 Dihydroxy-acid dehydratase compare
PP_2327 -3.4 -8.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1025 -3.2 -11.1 2-isopropylmalate synthase compare
PP_4364 -3.1 -9.8 putative Anti-sigma F factor antagonist compare
PP_4700 -3.0 -4.6 pantothenate synthetase compare
PP_1912 -2.9 -7.8 Phosphate acyltransferase compare
PP_2328 -2.9 -9.1 Phosphoadenosine phosphosulfate reductase compare
PP_5303 -2.8 -6.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4696 -2.5 -7.4 Nitrogen regulation protein NR(I) compare
PP_0127 -2.4 -8.3 Thiol:disulfide interchange protein compare
PP_2370 -2.4 -3.4 conserved protein of unknown function compare
PP_2414 -2.3 -4.1 conserved exported protein of unknown function compare
PP_0735 -2.1 -3.4 molybdopterin-synthase adenylyltransferase compare
PP_4910 -2.0 -4.0 conserved protein of unknown function compare
PP_1664 -2.0 -3.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_0291 -2.0 -2.5 conserved protein of unknown function compare
PP_5095 -1.7 -2.0 pyrroline-5-carboxylate reductase compare
PP_0164 -1.7 -7.6 conserved protein of unknown function compare
PP_0809 -1.7 -10.7 disulfide bond formation protein B compare
PP_2378 -1.7 -3.0 Fe/S biogenesis protein NfuA compare
PP_4895 -1.6 -3.5 tRNA dimethylallyltransferase compare
PP_1233 -1.6 -5.4 sulfurtransferase compare
PP_2388 -1.6 -6.0 Transporter, LysE family compare
PP_2390 -1.5 -7.3 Transcriptional regulator, LysR family compare
PP_1362 -1.4 -4.4 pyruvate kinase II compare
PP_1215 -1.4 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_1217 -1.4 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3790 -1.3 -8.2 diaminopimelate epimerase compare
PP_4917 -1.3 -3.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4121 -1.3 -5.5 NADH-quinone oxidoreductase subunit C/D compare
PP_5104 -1.3 -8.1 thiazole synthase compare
PP_0495 -1.2 -5.9 type 1 L-asparaginase conserved
PP_3484 -1.2 -5.8 Response regulator receiver protein compare
PP_0393 -1.2 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4782 -1.2 -4.4 Phosphomethylpyrimidine kinase compare
PP_4004 -1.2 -3.2 DNA translocase FtsK compare
PP_4964 -1.2 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_5331 -1.2 -3.5 Long-chain acyl-CoA thioester hydrolase compare
PP_1426 -1.2 -8.8 L-aspartate oxidase compare
PP_5350 -1.1 -3.3 Transcriptional regulator, RpiR family compare
PP_0593 -1.1 -1.6 putative ribosome-binding factor compare
PP_0888 -1.1 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_1237 -1.0 -2.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4199 -1.0 -1.5 putative Lipoprotein compare
PP_3649 -1.0 -2.9 Transcriptional regulator, GntR family compare
PP_1493 -1.0 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1770 -1.0 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_2168 -0.9 -7.0 Transaldolase compare
PP_5338 -0.9 -1.8 aspartate ammonia-lyase compare
PP_1468 -0.9 -2.6 Tyrosine recombinase XerD compare
PP_1216 -0.9 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4922 -0.9 -6.7 Phosphomethylpyrimidine synthase compare
PP_1654 -0.9 -3.5 cysteine synthase B compare
PP_4944 -0.9 -2.6 Carbamoyltransferase compare
PP_3590 -0.9 -4.6 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_5227 -0.9 -4.7 diaminopimelate decarboxylase compare
PP_0362 -0.9 -6.7 Biotin synthase compare
PP_4943 -0.9 -2.1 putative Glycosyl transferase compare
PP_1097 -0.8 -1.4 Methionine--tRNA ligase compare
PP_4792 -0.8 -2.7 conserved exported protein of unknown function compare
PP_5701 -0.8 -1.6 conserved protein of unknown function compare
PP_1110 -0.8 -2.6 serine acetyltransferase compare
PP_5230 -0.8 -2.5 Tyrosine recombinase XerC compare
PP_1208 -0.8 -1.7 conserved protein of unknown function, SlyX family compare
PP_0232 -0.8 -1.5 ATP-binding taurine transporter subunit compare
PP_3105 -0.8 -1.8 conserved membrane protein of unknown function compare
PP_2403 -0.8 -1.9 Chemotaxis protein CheY compare
PP_4699 -0.7 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5216 -0.7 -1.8 exopolyphosphatase compare
PP_0566 -0.7 -1.2 translation-related factor compare
PP_1733 -0.7 -1.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_1348 -0.7 -4.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5346 -0.7 -4.7 pyruvate carboxylase subunit B compare
PP_3102 -0.7 -2.6 conserved protein of unknown function compare
PP_5347 -0.7 -5.0 pyruvate carboxylase subunit A compare
PP_3506 -0.7 -3.1 Magnesium chelatase, subunit ChII compare
PP_3239 -0.7 -2.6 putative cointegrate resolution protein T Tn4652 compare
PP_5028 -0.7 -2.5 proline iminopeptidase compare
PP_1346 -0.7 -3.5 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_0065 -0.7 -2.2 NAD-binding component of TrK potassium transporter compare
PP_2389 -0.7 -2.9 conserved protein of unknown function compare
PP_4131 -0.7 -3.1 NADH-quinone oxidoreductase subunit N compare
PP_4942 -0.7 -1.7 conserved protein of unknown function compare
PP_2631 -0.6 -2.0 putative cellulose biosynthesis, BcsF/YhjT compare
PP_4480 -0.6 -4.5 arginine N-succinyltransferase, subunit alpha compare
PP_0364 -0.6 -4.1 pimeloyl-[acp] methyl ester esterase compare
PP_4984 -0.6 -4.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0363 -0.6 -5.3 8-amino-7-oxononanoate synthase compare
PP_0695 -0.6 -3.4 conserved protein of unknown function compare
PP_4684 -0.6 -3.9 conserved protein of unknown function with kinase-like domain compare
PP_1734 -0.6 -1.5 Probable septum site-determining protein MinC compare
PP_0833 -0.6 -1.6 queuine tRNA-ribosyltransferase compare
PP_1214 -0.6 -1.4 putative transcriptional regulatory protein compare
PP_5202 -0.6 -2.2 putative cell division protein compare
PP_4379 -0.6 -3.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5348 -0.6 -4.0 Transcriptional regulator, LysR family compare
PP_1679 -0.6 -1.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4832 -0.6 -2.9 Precorrin-6x reductase compare
PP_3789 -0.6 -3.4 putative Efflux transporter compare
PP_1293 -0.6 -1.5 molybdopterin synthase small subunit compare
PP_3505 -0.6 -1.9 conserved protein of unknown function compare
PP_4268 -0.6 -1.1 nucleoid-associated broad specificity regulator compare
PP_2633 -0.6 -1.2 conserved protein of unknown function compare
PP_3892 -0.6 -1.5 conserved protein of unknown function compare
PP_4993 -0.6 -1.9 Glutathione synthetase compare
PP_5075 -0.6 -4.5 glutamate synthase (NADPH) beta subunit compare
PP_5628 -0.6 -1.3 conserved protein of unknown function compare
PP_4739 -0.6 -1.7 conserved protein of unknown function compare
PP_4880 -0.6 -2.2 exoribonuclease R compare
PP_2929 -0.6 -3.7 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0673 -0.6 -1.5 conserved protein of unknown function compare
PP_1303 -0.6 -3.0 Sulfate adenylyltransferase subunit 2 compare
PP_1589 -0.6 -3.5 uridylyltransferase compare
PP_5054 -0.5 -1.5 glutaredoxin 3 compare
PP_0001 -0.5 -1.0 probable chromosome-partitioning protein compare
PP_4058 -0.5 -4.1 1,4-alpha-glucan branching enzyme compare
PP_0365 -0.5 -3.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4481 -0.5 -3.5 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_4126 -0.5 -1.0 NADH-quinone oxidoreductase subunit I compare
PP_5048 -0.5 -3.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5717 -0.5 -1.1 conserved protein of unknown function compare
PP_0832 -0.5 -2.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0366 -0.5 -3.1 dethiobiotin synthetase compare
PP_0874 -0.5 -1.7 conserved protein of unknown function compare
PP_5017 -0.5 -1.1 Sec-independent protein translocase protein TatB compare
PP_5076 -0.5 -4.6 L-glutamate synthase(NADPH) alpha subunit compare
PP_1304 -0.5 -3.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5352 -0.5 -3.7 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4695 -0.5 -3.7 Sensory box histidine kinase compare
PP_2307 -0.5 -1.3 conserved protein of unknown function compare
PP_5008 -0.5 -1.2 Poly granule-associated protein compare
PP_0435 -0.5 -4.0 Peptidase, M23/M37 family compare
PP_4826 -0.5 -3.0 Precorrin-3B C17-methyltransferase compare
PP_1268 -0.5 -1.6 putative HtrA suppressor protein sohA compare
PP_1128 -0.5 -1.1 OmpA family protein compare
PP_3098 -0.5 -1.0 conserved protein of unknown function compare
PP_4831 -0.5 -3.1 putative cobalt-precorrin-6A synthase compare
PP_5035 -0.5 -3.3 Histidine utilization repressor compare
PP_1677 -0.5 -2.5 Adenosyl-cobyric acid synthase compare
PP_1036 -0.5 -2.1 membrane-bound lytic murein transglycosylase F compare
PP_2253 -0.5 -1.7 Transcriptional regulator, GntR family compare
PP_1681 -0.5 -3.4 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4829 -0.5 -1.8 putative precorrin-3B synthase compare
PP_2345 -0.5 -1.6 conserved exported protein of unknown function compare
PP_5267 -0.5 -1.0 putative cytochrome c5 compare
PP_0425 -0.5 -1.7 conserved protein of unknown function compare
PP_1198 -0.5 -1.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2883 -0.5 -1.4 conserved protein of unknown function compare
PP_5047 -0.5 -2.7 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5507 -0.5 -1.7 protein of unknown function compare
PP_4247 -0.5 -1.3 Exonuclease compare
PP_4848 -0.5 -1.7 Curved DNA-binding protein compare
PP_4124 -0.5 -1.9 NADH-quinone oxidoreductase subunit G compare
PP_t10 -0.4 -1.0 tRNA-Pro compare
PP_1690 -0.4 -2.1 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source L-Asparagine across organisms