Experiment set27IT051 for Pseudomonas putida KT2440

Compare to:

L-Lysine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1988 -7.9 -5.4 3-isopropylmalate dehydrogenase compare
PP_0292 -7.4 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1079 -7.3 -8.6 Ornithine carbamoyltransferase compare
PP_4678 -7.2 -13.8 Ketol-acid reductoisomerase compare
PP_3511 -7.1 -9.7 Branched-chain-amino-acid aminotransferase compare
PP_2088 -6.7 -8.0 RNA polymerase sigma factor SigX compare
PP_0966 -6.6 -14.1 Histidinol dehydrogenase compare
PP_1995 -6.6 -11.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5048 -6.5 -9.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0420 -6.5 -15.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4680 -6.5 -16.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4724 -6.4 -7.7 Carbamoyl-phosphate synthase small chain compare
PP_0967 -6.4 -13.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0082 -6.3 -6.2 tryptophan synthase alpha chain compare
PP_0422 -6.3 -8.7 Indole-3-glycerol phosphate synthase compare
PP_2168 -6.3 -14.7 Transaldolase compare
PP_5098 -6.2 -11.1 methionine biosynthesis protein MetW compare
PP_4890 -6.0 -8.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_4723 -6.0 -14.6 Carbamoyl-phosphate synthase large chain compare
PP_0290 -6.0 -11.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5097 -6.0 -17.7 homoserine O-acetyltransferase compare
PP_5014 -5.9 -5.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_0184 -5.9 -5.8 Argininosuccinate lyase compare
PP_1986 -5.9 -5.7 3-isopropylmalate dehydratase small subunit compare
PP_0787 -5.9 -6.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5076 -5.9 -26.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_2371 -5.7 -8.6 Sulphite reductase hemoprotein, beta subunit compare
PP_5075 -5.6 -17.7 glutamate synthase (NADPH) beta subunit compare
PP_0083 -5.5 -8.5 tryptophan synthase beta chain compare
PP_4909 -5.5 -11.1 phosphoserine phosphatase compare
PP_0691 -5.5 -3.8 Glutamate 5-kinase compare
PP_0417 -5.4 -23.0 Anthranilate synthase component 1 compare
PP_5289 -5.3 -7.2 Acetylglutamate kinase compare
PP_2001 -5.1 -10.6 O-succinylhomoserine sulfhydrylase compare
PP_0293 -5.1 -4.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4679 -5.1 -9.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0965 -5.1 -11.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1088 -5.0 -15.1 Argininosuccinate synthase compare
PP_2327 -5.0 -11.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5185 -4.9 -9.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1985 -4.9 -8.1 3-isopropylmalate dehydratase large subunit compare
PP_0421 -4.8 -9.1 Anthranilate phosphoribosyltransferase compare
PP_5128 -4.8 -8.8 Dihydroxy-acid dehydratase compare
PP_0289 -4.8 -9.4 Imidazoleglycerol-phosphate dehydratase compare
PP_1231 -4.7 -10.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5155 -4.5 -5.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5047 -4.4 -10.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_3999 -4.2 -9.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4700 -4.2 -2.9 pantothenate synthetase compare
PP_5015 -4.1 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2370 -4.0 -4.2 conserved protein of unknown function compare
PP_4058 -4.0 -16.4 1,4-alpha-glucan branching enzyme compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_1589 -3.4 -10.9 uridylyltransferase compare
PP_0383 -3.3 -12.7 Lysine 2-monooxygenase conserved
PP_0384 -3.3 -9.7 Transcriptional regulator, AsnC family conserved
PP_1025 -3.1 -8.2 2-isopropylmalate synthase compare
PP_5303 -2.9 -7.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0339 -2.8 -5.8 Pyruvate dehydrogenase E1 component compare
PP_5345 -2.7 -4.7 Acetyltransferase, GNAT family compare
PP_1233 -2.7 -7.9 sulfurtransferase compare
PP_5347 -2.6 -14.4 pyruvate carboxylase subunit A compare
PP_4696 -2.6 -8.3 Nitrogen regulation protein NR(I) compare
PP_3596 -2.5 -11.0 D-lysine oxidase compare
PP_5346 -2.5 -11.7 pyruvate carboxylase subunit B compare
PP_1300 -2.4 -8.4 putative amino acid ABC transporter - ATP-binding subunit conserved
PP_0406 -2.4 -7.8 Nucleotidyltransferase family protein compare
PP_1664 -2.3 -5.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_3595 -2.3 -12.4 L-lysine and D-lysine ABC transporter, permease component 2 (from data) compare
PP_0735 -2.3 -3.6 molybdopterin-synthase adenylyltransferase compare
PP_5095 -2.3 -2.1 pyrroline-5-carboxylate reductase compare
PP_4782 -2.2 -6.9 Phosphomethylpyrimidine kinase compare
PP_4964 -2.2 -3.3 D-erythrose 4-phosphate dehydrogenase compare
PP_3593 -2.2 -11.1 L-lysine and D-lysine ABC transporter, substrate-binding component (from data) compare
PP_0214 -2.1 -7.4 4-aminobutyrate aminotransferase compare
PP_1110 -2.1 -4.2 serine acetyltransferase compare
PP_2328 -2.0 -7.7 Phosphoadenosine phosphosulfate reductase compare
PP_3594 -2.0 -10.6 L-lysine and D-lysine ABC transporter, permease component 1 (from data) compare
PP_5104 -1.9 -9.8 thiazole synthase compare
PP_0291 -1.9 -2.1 conserved protein of unknown function compare
PP_1733 -1.9 -2.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_1654 -1.9 -5.5 cysteine synthase B compare
PP_4699 -1.9 -5.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1217 -1.8 -5.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1109 -1.8 -11.7 Transcriptional regulator, GntR family compare
PP_0435 -1.8 -12.0 Peptidase, M23/M37 family compare
PP_0434 -1.8 -9.3 Anhydro-N-acetylmuramic acid kinase compare
PP_5348 -1.8 -8.6 Transcriptional regulator, LysR family compare
PP_2145 -1.7 -7.1 beta-N-acetylglucosaminidase compare
PP_1355 -1.7 -13.2 Muropeptide permease AmpG compare
PP_4922 -1.7 -12.0 Phosphomethylpyrimidine synthase compare
PP_3592 -1.6 -9.4 Transcriptional regulator, RpiR family compare
PP_1022 -1.6 -4.5 glucose 6-phosphate-1-dehydrogenase compare
PP_1111 -1.6 -6.1 putative Synthetase compare
PP_1297 -1.6 -9.6 putative amino-acid ABC transporter-binding protein YhdW conserved
PP_4693 -1.6 -3.6 RNA polymerase-binding transcription factor DksA compare
PP_1097 -1.5 -2.3 Methionine--tRNA ligase compare
PP_0405 -1.5 -11.8 conserved protein of unknown function compare
PP_1912 -1.5 -6.7 Phosphate acyltransferase compare
PP_5146 -1.5 -8.9 RNA pyrophosphohydrolase compare
PP_1764 -1.5 -7.0 Phosphoglycolate phosphatase 2 compare
PP_3597 -1.5 -6.6 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_4004 -1.4 -4.0 DNA translocase FtsK compare
PP_4874 -1.4 -1.4 50S ribosomal protein L9 compare
PP_4098 -1.3 -2.1 UvrABC system protein C compare
PP_5260 -1.3 -8.6 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) compare
PP_1348 -1.3 -5.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0382 -1.3 -8.2 5-aminopentanamidase conserved
PP_0001 -1.3 -1.8 probable chromosome-partitioning protein compare
PP_5216 -1.2 -1.8 exopolyphosphatase compare
PP_1216 -1.2 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1215 -1.2 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_1224 -1.2 -5.9 periplasmic subunit of the TolQRA transport system compare
PP_4143 -1.2 -5.2 conserved protein of unknown function compare
PP_4943 -1.2 -2.7 putative Glycosyl transferase compare
PP_4695 -1.2 -8.2 Sensory box histidine kinase compare
PP_4910 -1.2 -1.7 conserved protein of unknown function compare
PP_1428 -1.1 -2.4 Sigma factor AlgU negative regulatory protein compare
PP_4799 -1.1 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0393 -1.1 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1734 -1.1 -2.2 Probable septum site-determining protein MinC compare
PP_4701 -1.1 -1.6 glucose-6-phosphate isomerase compare
PP_4060 -1.1 -9.1 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1468 -1.1 -1.5 Tyrosine recombinase XerD compare
PP_3376 -1.1 -5.9 putative phosphonate dehydrogenase compare
PP_0719 -1.1 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4364 -1.1 -5.4 putative Anti-sigma F factor antagonist compare
PP_2402 -1.1 -2.5 putative Sensor histidine kinase compare
PP_5230 -1.0 -2.8 Tyrosine recombinase XerC compare
PP_0362 -1.0 -7.3 Biotin synthase compare
PP_1783 -1.0 -1.7 dTDP-glucose pyrophosphorylase compare
PP_5257 -1.0 -7.6 L-pipecolate oxidase compare
PP_1994 -1.0 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_1142 -1.0 -1.7 conserved protein of unknown function compare
PP_1362 -1.0 -3.4 pyruvate kinase II compare
PP_1304 -1.0 -6.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5177 -1.0 -6.7 spermidine/putrescine ABC transporter - permease subunit compare
PP_5028 -1.0 -3.2 proline iminopeptidase compare
PP_5258 -0.9 -5.2 L-piperidine-6-carboxylate dehydrogenase compare
PP_3506 -0.9 -4.1 Magnesium chelatase, subunit ChII compare
PP_2433 -0.9 -1.6 conserved protein of unknown function compare
PP_3924 -0.9 -4.1 conserved protein of unknown function compare
PP_0833 -0.9 -1.6 queuine tRNA-ribosyltransferase compare
PP_4482 -0.9 -3.8 Transcriptional regulator, AraC family compare
PP_1298 -0.9 -4.3 putative amino acid ABC transporter - permease subunit compare
PP_5350 -0.9 -3.7 Transcriptional regulator, RpiR family compare
PP_0065 -0.9 -2.2 NAD-binding component of TrK potassium transporter compare
PP_0949 -0.9 -5.2 putative ATP-binding protein UPF0042 compare
PP_4942 -0.9 -2.0 conserved protein of unknown function compare
PP_1430 -0.9 -5.9 putative periplasmic serine endoprotease DegP-like compare
PP_0593 -0.9 -1.3 putative ribosome-binding factor compare
PP_2429 -0.9 -1.7 putative Membrane protein compare
PP_1826 -0.8 -3.1 Hydrolase, isochorismatase family compare
PP_2148 -0.8 -6.5 transcription-repair coupling factor compare
PP_5315 -0.8 -2.2 Rubredoxin-1 compare
PP_3649 -0.8 -2.4 Transcriptional regulator, GntR family compare
PP_0127 -0.8 -3.9 Thiol:disulfide interchange protein compare
PP_0003 -0.8 -2.3 16S RNA methyltransferase compare
PP_0213 -0.8 -3.1 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_5181 -0.8 -6.7 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_4199 -0.8 -1.2 putative Lipoprotein compare
PP_1268 -0.8 -2.2 putative HtrA suppressor protein sohA compare
PP_4804 -0.8 -1.9 RlpA-like lipoprotein compare
PP_3064 -0.8 -1.6 Phage tail protein compare
PP_2181 -0.8 -3.6 Transcriptional regulator, Cro/CI family compare
PP_4754 -0.8 -5.1 Transcriptional regulator, TetR family compare
PP_3102 -0.7 -2.4 conserved protein of unknown function compare
PP_3339 -0.7 -2.1 conserved exported protein of unknown function compare
PP_1426 -0.7 -6.0 L-aspartate oxidase compare
PP_5179 -0.7 -5.6 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_5178 -0.7 -6.0 spermidine/putrescine ABC transporter - inner membrane subunit compare
PP_4120 -0.7 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_1716 -0.7 -2.3 Transcriptional regulator, Cro/CI family compare
PP_0789 -0.7 -3.1 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1128 -0.7 -1.3 OmpA family protein compare
PP_0832 -0.7 -2.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4136 -0.7 -1.4 Transcriptional regulator, LuxR family compare
PP_2910 -0.7 -4.7 L-2-hydroxyglutarate oxidase compare
PP_4895 -0.7 -2.0 tRNA dimethylallyltransferase compare
PP_2324 -0.7 -4.6 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_3508 -0.7 -2.4 Protein CobW compare
PP_5621 -0.7 -2.2 protein of unknown function compare
PP_1303 -0.7 -3.9 Sulfate adenylyltransferase subunit 2 compare
PP_3603 -0.7 -3.8 Transcriptional regulator, GntR family compare
PP_4546 -0.7 -2.2 ATP-dependent helicase HrpA compare
PP_5073 -0.7 -1.1 conserved exported protein of unknown function compare
PP_4880 -0.7 -2.4 exoribonuclease R compare
PP_5035 -0.7 -4.4 Histidine utilization repressor compare
PP_5217 -0.7 -5.8 Polyphosphate kinase compare
PP_4829 -0.7 -2.4 putative precorrin-3B synthase compare
PP_5045 -0.6 -2.1 tRNA sulfurtransferase compare
PP_5507 -0.6 -1.5 protein of unknown function compare
PP_2929 -0.6 -4.2 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5338 -0.6 -1.3 aspartate ammonia-lyase compare
PP_2189 -0.6 -2.1 conserved protein of unknown function compare
PP_3892 -0.6 -1.6 conserved protein of unknown function compare
PP_1346 -0.6 -2.7 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4379 -0.6 -2.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2345 -0.6 -2.1 conserved exported protein of unknown function compare
PP_5426 -0.6 -4.4 conserved protein of unknown function compare


Specific Phenotypes

For 13 genes in this experiment

For nitrogen source L-Lysine in Pseudomonas putida KT2440

For nitrogen source L-Lysine across organisms