Experiment set27IT048 for Pseudomonas putida KT2440

Compare to:

L-Cysteine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4004 -3.7 -5.1 DNA translocase FtsK compare
PP_1216 -3.5 -4.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0083 -2.7 -9.9 tryptophan synthase beta chain compare
PP_4999 -2.6 -2.5 dihydroorotase-like protein compare
PP_1217 -2.6 -5.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1215 -2.5 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_5048 -2.3 -5.2 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5076 -2.3 -15.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_0082 -2.3 -7.4 tryptophan synthase alpha chain compare
PP_5075 -2.3 -12.5 glutamate synthase (NADPH) beta subunit compare
PP_0293 -2.2 -3.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1468 -2.1 -3.5 Tyrosine recombinase XerD compare
PP_2088 -2.1 -5.4 RNA polymerase sigma factor SigX compare
PP_4723 -2.1 -10.6 Carbamoyl-phosphate synthase large chain compare
PP_1629 -2.0 -4.9 Protein RecA compare
PP_4701 -1.9 -1.9 glucose-6-phosphate isomerase compare
PP_1079 -1.9 -8.3 Ornithine carbamoyltransferase compare
PP_4058 -1.9 -10.4 1,4-alpha-glucan branching enzyme compare
PP_4724 -1.8 -7.7 Carbamoyl-phosphate synthase small chain compare
PP_4943 -1.8 -3.1 putative Glycosyl transferase compare
PP_5230 -1.7 -3.4 Tyrosine recombinase XerC compare
PP_1988 -1.7 -9.4 3-isopropylmalate dehydrogenase compare
PP_0290 -1.7 -5.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0292 -1.6 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0289 -1.6 -6.2 Imidazoleglycerol-phosphate dehydratase compare
PP_2435 -1.6 -6.9 cysteine desulfurase compare
PP_5155 -1.5 -5.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1994 -1.5 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_1493 -1.4 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0274 -1.4 -2.2 putative transcriptional regulator containing HTH domain compare
PP_1986 -1.4 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_1589 -1.4 -6.8 uridylyltransferase compare
PP_4909 -1.4 -5.7 phosphoserine phosphatase compare
PP_4595 -1.3 -6.7 putative LRP-like transcriptional regulator compare
PP_0422 -1.3 -5.2 Indole-3-glycerol phosphate synthase compare
PP_5014 -1.3 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0421 -1.3 -5.9 Anthranilate phosphoribosyltransferase compare
PP_4680 -1.3 -8.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3098 -1.3 -1.9 conserved protein of unknown function compare
PP_3511 -1.3 -7.8 Branched-chain-amino-acid aminotransferase compare
PP_0417 -1.2 -9.5 Anthranilate synthase component 1 compare
PP_0966 -1.2 -8.0 Histidinol dehydrogenase compare
PP_0185 -1.2 -7.1 Positive alginate biosynthesis regulatory protein compare
PP_4340 -1.2 -4.6 response regulator for chemotactic signal transduction compare
PP_5047 -1.2 -4.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4693 -1.2 -4.3 RNA polymerase-binding transcription factor DksA compare
PP_1995 -1.2 -5.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4060 -1.2 -8.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4678 -1.2 -8.3 Ketol-acid reductoisomerase compare
PP_2168 -1.1 -8.2 Transaldolase compare
PP_5128 -1.1 -7.4 Dihydroxy-acid dehydratase compare
PP_4338 -1.1 -6.5 Chemotaxis histidine kinase CheA compare
PP_4098 -1.1 -1.7 UvrABC system protein C compare
PP_1322 -1.1 -2.5 putative Lipoprotein compare
PP_0967 -1.1 -6.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3649 -1.1 -2.8 Transcriptional regulator, GntR family compare
PP_4799 -1.1 -0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4895 -1.1 -2.6 tRNA dimethylallyltransferase compare
PP_1198 -1.0 -2.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0420 -1.0 -6.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0276 -1.0 -1.6 Transcriptional regulator, Cro/CI family compare
PP_1142 -1.0 -1.6 conserved protein of unknown function compare
PP_4364 -1.0 -3.6 putative Anti-sigma F factor antagonist compare
PP_1088 -1.0 -6.3 Argininosuccinate synthase compare
PP_0123 -1.0 -4.8 DNA polymerase I, 5 compare
PP_1985 -1.0 -3.1 3-isopropylmalate dehydratase large subunit compare
PP_0339 -0.9 -3.4 Pyruvate dehydrogenase E1 component compare
PP_1926 -0.9 -3.9 putative phosphotyrosine-protein phosphatase compare
PP_5233 -0.9 -4.2 ammonium transporter AmtB compare
PP_4696 -0.9 -3.1 Nitrogen regulation protein NR(I) compare
PP_2307 -0.9 -1.6 conserved protein of unknown function compare
PP_5701 -0.9 -2.0 conserved protein of unknown function compare
PP_4267 -0.9 -2.7 Recombination protein RecR compare
PP_1328 -0.9 -2.0 Protein MraZ compare
PP_2793 -0.8 -2.7 Acyl-CoA dehydrogenase family protein compare
PP_3637 -0.8 -1.5 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0398 -0.8 -1.5 Thiosulfate sulfurtransferase GlpE compare
PP_1025 -0.8 -6.1 2-isopropylmalate synthase compare
PP_4561 -0.8 -1.2 stress response protein compare
PP_3241 -0.8 -1.4 conserved exported protein of unknown function compare
PP_3971 -0.8 -1.9 conserved protein of unknown function compare
PP_1022 -0.8 -3.8 glucose 6-phosphate-1-dehydrogenase compare
PP_5098 -0.8 -4.3 methionine biosynthesis protein MetW compare
PP_4392 -0.8 -4.5 chemotaxis protein methyltransferase compare
PP_1366 -0.8 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_5289 -0.8 -1.8 Acetylglutamate kinase compare
PP_2302 -0.8 -4.2 DNA-binding, ATP-dependent protease compare
PP_5097 -0.8 -5.4 homoserine O-acetyltransferase compare
PP_1656 -0.8 -5.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_0184 -0.8 -3.9 Argininosuccinate lyase compare
PP_2087 -0.8 -1.8 CmpX protein compare
PP_4679 -0.7 -3.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5185 -0.7 -3.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4890 -0.7 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_4910 -0.7 -1.3 conserved protein of unknown function compare
PP_2107 -0.7 -2.0 conserved protein of unknown function compare
PP_1824 -0.7 -1.3 Smr domain protein compare
PP_2900 -0.7 -1.8 conserved protein of unknown function compare
PP_0965 -0.7 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4993 -0.7 -1.9 Glutathione synthetase compare
PP_2581 -0.7 -1.7 conserved protein of unknown function compare
PP_0914 -0.7 -5.3 GGDEF domain protein compare
PP_2370 -0.7 -2.3 conserved protein of unknown function compare
PP_5015 -0.7 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3916 -0.7 -1.5 conserved protein of unknown function compare
PP_0012 -0.7 -4.8 DNA replication and repair protein compare
PP_3654 -0.7 -3.5 leucine-responsive regulatory protein compare
PP_0040 -0.7 -2.6 hypothetical protein compare
PP_4947 -0.7 -5.4 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_3035 -0.7 -1.4 conserved protein of unknown function compare
PP_4792 -0.7 -1.5 conserved exported protein of unknown function compare
PP_5453 -0.7 -1.7 conserved protein of unknown function compare
PP_2540 -0.6 -2.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5528 -0.6 -1.5 conserved protein of unknown function compare
PP_1041 -0.6 -1.6 twin arginine protein export complex subunit compare
PP_0225 -0.6 -2.8 sulfur compound ABC transporter - ATP-binding subunit compare
PP_3505 -0.6 -1.8 conserved protein of unknown function compare
PP_1779 -0.6 -2.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4363 -0.6 -4.4 Sensor histidine kinase/response regulator compare
PP_1408 -0.6 -4.3 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_0356 -0.6 -4.1 malate synthase G compare
PP_5227 -0.6 -3.1 diaminopimelate decarboxylase compare
PP_4143 -0.6 -2.0 conserved protein of unknown function compare
PP_0164 -0.6 -2.5 conserved protein of unknown function compare
PP_4774 -0.6 -3.8 divalent cation efflux transporter compare
PP_0685 -0.6 -1.9 conserved protein of unknown function compare
PP_4961 -0.6 -1.0 putative Lipoprotein compare
PP_0182 -0.6 -2.6 conserved protein of unknown function compare
PP_0673 -0.6 -1.2 conserved protein of unknown function compare
PP_4504 -0.6 -1.2 conserved exported protein of unknown function compare
PP_0226 -0.6 -3.8 sulfur compound ABC transporter - permease subunit compare
PP_1609 -0.6 -1.6 conserved protein of unknown function compare
PP_1679 -0.6 -2.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2883 -0.6 -1.6 conserved protein of unknown function compare
PP_1736 -0.6 -2.2 conserved protein of unknown function compare
PP_4977 -0.5 -4.1 5,10-methylenetetrahydrofolate reductase compare
PP_2756 -0.5 -1.2 conserved protein of unknown function compare
PP_1028 -0.5 -2.5 Transcriptional regulator, LysR family compare
PP_0291 -0.5 -1.6 conserved protein of unknown function compare
PP_5347 -0.5 -3.5 pyruvate carboxylase subunit A compare
PP_2849 -0.5 -2.4 urease accessory protein compare
PP_5083 -0.5 -1.9 putative Type IV pili biogenesis protein PilM compare
PP_0052 -0.5 -3.6 beta-lactamase domain protein, putative hydrolase compare
PP_4335 -0.5 -3.7 flagellar motor protein compare
PP_1702 -0.5 -1.6 Recombination-associated protein RdgC compare
PP_4418 -0.5 -1.7 conserved protein of unknown function compare
PP_1878 -0.5 -3.5 conserved protein of unknown function compare
PP_0025 -0.5 -0.9 hypothetical protein compare
PP_5176 -0.5 -1.7 conserved protein of unknown function compare
PP_1733 -0.5 -1.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_2337 -0.5 -1.0 aconitate isomerase compare
PP_2773 -0.5 -0.9 conserved protein of unknown function compare
PP_5271 -0.5 -2.1 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_2090 -0.5 -2.4 Uroporphyrinogen-III C-methyltransferase compare
PP_2896 -0.5 -3.1 conserved protein of unknown function compare
PP_3621 -0.5 -2.3 vanillin dehydrogenase, iorA-like component (from data) compare
PP_2436 -0.5 -2.9 Transcriptional regulator, LysR family compare
PP_2147 -0.5 -2.3 conserved exported protein of unknown function compare
PP_3653 -0.5 -3.2 Transporter, LysE family compare
PP_3481 -0.5 -1.4 conserved exported protein of unknown function compare
PP_5640 -0.5 -2.0 conserved protein of unknown function compare
PP_2750 -0.5 -1.4 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_5507 -0.5 -1.2 protein of unknown function compare
PP_5236 -0.5 -3.3 conserved protein of unknown function compare
PP_0653 -0.5 -1.0 conserved protein of unknown function compare
PP_1055 -0.5 -0.9 Type II secretion pathway protein GspN compare
PP_0406 -0.5 -2.1 Nucleotidyltransferase family protein compare
PP_2229 -0.5 -1.9 putative K(+)/H(+) antiporter subunit C compare
PP_1694 -0.5 -2.4 DNA recombination limiting inversions protein compare
PP_2320 -0.5 -3.5 conserved exported protein of unknown function compare
PP_1681 -0.5 -3.1 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_5042 -0.5 -2.6 conserved protein of unknown function compare
PP_2326 -0.5 -3.5 Universal stress protein compare
PP_3254 -0.5 -3.0 putative Nucleosidase compare
PP_1261 -0.5 -1.3 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_5698 -0.5 -2.5 conserved exported protein of unknown function compare
PP_1186 -0.5 -0.9 two component system DNA-binding transcriptional dual regulator compare
PP_0910 -0.5 -2.4 conserved exported protein of unknown function compare
PP_4406 -0.5 -1.7 conserved protein of unknown function compare
PP_0227 -0.5 -3.4 periplasmic cystine-binding protein compare
PP_3903 -0.5 -1.2 conserved protein of unknown function compare
PP_4754 -0.5 -2.5 Transcriptional regulator, TetR family compare
PP_2768 -0.5 -2.3 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1734 -0.5 -1.0 Probable septum site-determining protein MinC compare
PP_3398 -0.5 -1.6 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1294 -0.5 -2.3 molybdopterin synthase large subunit compare
PP_5127 -0.5 -2.7 ribosomal RNA large subunit methyltransferase I compare
PP_4505 -0.5 -2.9 Sensor histidine kinase compare
PP_5225 -0.5 -0.8 frataxin compare
PP_2378 -0.5 -0.9 Fe/S biogenesis protein NfuA compare
PP_5267 -0.5 -1.2 putative cytochrome c5 compare
PP_3810 -0.5 -1.6 conserved protein of unknown function compare
PP_4787 -0.4 -0.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_3232 -0.4 -2.4 Acetyltransferase, GNAT family compare
PP_1435 -0.4 -1.8 DNA repair protein RecO compare
PP_2243 -0.4 -1.7 conserved protein of unknown function compare
PP_2872 -0.4 -2.6 O-acetylserine/cysteine export transporter compare
PP_0209 -0.4 -2.2 ATP-binding taurine transporter subunit compare
PP_2923 -0.4 -1.7 conserved protein of unknown function compare
PP_4477 -0.4 -2.6 N-succinylarginine dihydrolase compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Cysteine in Pseudomonas putida KT2440

For nitrogen source L-Cysteine across organisms