Experiment set27IT047 for Pseudomonas putida KT2440

Compare to:

L-Alanine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.3 -5.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5048 -6.5 -9.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0290 -6.5 -10.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -6.4 -8.8 phosphoserine phosphatase compare
PP_1231 -6.4 -8.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5076 -6.3 -24.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_0082 -6.3 -6.1 tryptophan synthase alpha chain compare
PP_5075 -6.3 -15.7 glutamate synthase (NADPH) beta subunit compare
PP_5185 -6.2 -6.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1985 -6.2 -7.4 3-isopropylmalate dehydratase large subunit compare
PP_4364 -6.1 -6.4 putative Anti-sigma F factor antagonist compare
PP_1079 -6.0 -10.0 Ornithine carbamoyltransferase compare
PP_4724 -6.0 -8.2 Carbamoyl-phosphate synthase small chain compare
PP_0420 -6.0 -16.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0292 -5.9 -7.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1986 -5.8 -5.7 3-isopropylmalate dehydratase small subunit compare
PP_1988 -5.8 -12.4 3-isopropylmalate dehydrogenase compare
PP_4678 -5.8 -19.0 Ketol-acid reductoisomerase compare
PP_4723 -5.7 -16.1 Carbamoyl-phosphate synthase large chain compare
PP_0967 -5.7 -14.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1995 -5.7 -12.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0787 -5.5 -5.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4680 -5.4 -19.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2371 -5.3 -8.9 Sulphite reductase hemoprotein, beta subunit compare
PP_1088 -5.3 -14.0 Argininosuccinate synthase compare
PP_0083 -5.2 -9.4 tryptophan synthase beta chain compare
PP_3511 -5.2 -10.8 Branched-chain-amino-acid aminotransferase compare
PP_0184 -5.2 -8.6 Argininosuccinate lyase compare
PP_5047 -5.1 -11.3 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0289 -5.1 -9.9 Imidazoleglycerol-phosphate dehydratase compare
PP_5015 -5.1 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4890 -5.0 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_5155 -5.0 -5.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5289 -5.0 -6.9 Acetylglutamate kinase compare
PP_0966 -4.8 -15.4 Histidinol dehydrogenase compare
PP_0421 -4.8 -8.3 Anthranilate phosphoribosyltransferase compare
PP_0965 -4.7 -11.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0417 -4.7 -19.0 Anthranilate synthase component 1 compare
PP_5097 -4.6 -19.1 homoserine O-acetyltransferase compare
PP_5014 -4.6 -7.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_5098 -4.4 -11.3 methionine biosynthesis protein MetW compare
PP_0422 -4.4 -8.7 Indole-3-glycerol phosphate synthase compare
PP_5347 -4.4 -16.3 pyruvate carboxylase subunit A compare
PP_3999 -4.4 -8.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0691 -4.3 -5.8 Glutamate 5-kinase compare
PP_0164 -4.3 -8.7 conserved protein of unknown function compare
PP_5270 -4.3 -8.4 D-amino-acid:quinone oxidoreductase (deaminating) conserved
PP_1589 -4.3 -12.2 uridylyltransferase compare
PP_4679 -4.2 -8.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5348 -4.0 -12.7 Transcriptional regulator, LysR family compare
PP_2001 -4.0 -10.6 O-succinylhomoserine sulfhydrylase compare
PP_5128 -3.9 -8.8 Dihydroxy-acid dehydratase compare
PP_2328 -3.9 -9.1 Phosphoadenosine phosphosulfate reductase compare
PP_2327 -3.8 -9.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4700 -3.8 -3.7 pantothenate synthetase compare
PP_5346 -3.8 -10.4 pyruvate carboxylase subunit B compare
PP_0127 -3.7 -7.1 Thiol:disulfide interchange protein compare
PP_4943 -3.7 -3.6 putative Glycosyl transferase compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_3821 -3.5 -13.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1215 -3.4 -2.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_4696 -3.3 -7.4 Nitrogen regulation protein NR(I) compare
PP_0339 -3.2 -5.3 Pyruvate dehydrogenase E1 component compare
PP_0809 -3.2 -14.2 disulfide bond formation protein B compare
PP_2378 -3.1 -3.0 Fe/S biogenesis protein NfuA compare
PP_1912 -3.0 -7.5 Phosphate acyltransferase compare
PP_5095 -3.0 -2.6 pyrroline-5-carboxylate reductase compare
PP_4940 -2.8 -10.5 Putative glycosyltransferase compare
PP_3484 -2.8 -6.2 Response regulator receiver protein compare
PP_1025 -2.6 -9.0 2-isopropylmalate synthase compare
PP_0362 -2.5 -14.6 Biotin synthase compare
PP_5271 -2.5 -5.9 DNA-binding transcriptional dual regulator, leucine-binding conserved
PP_2388 -2.2 -4.6 Transporter, LysE family compare
PP_1664 -2.2 -5.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_0735 -2.2 -3.2 molybdopterin-synthase adenylyltransferase compare
PP_2370 -2.1 -2.7 conserved protein of unknown function compare
PP_5303 -2.0 -4.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1022 -2.0 -6.3 glucose 6-phosphate-1-dehydrogenase compare
PP_2088 -2.0 -7.5 RNA polymerase sigma factor SigX compare
PP_0291 -2.0 -2.0 conserved protein of unknown function compare
PP_3790 -1.9 -9.9 diaminopimelate epimerase compare
PP_4984 -1.9 -13.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4782 -1.9 -8.1 Phosphomethylpyrimidine kinase compare
PP_5104 -1.8 -9.4 thiazole synthase compare
PP_0846 -1.8 -2.7 DnaK-like molecular chaperone specific for IscU compare
PP_0365 -1.8 -10.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1217 -1.8 -5.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4004 -1.8 -4.4 DNA translocase FtsK compare
PP_1233 -1.8 -6.0 sulfurtransferase compare
PP_0363 -1.7 -10.7 8-amino-7-oxononanoate synthase compare
PP_4964 -1.7 -3.4 D-erythrose 4-phosphate dehydrogenase compare
PP_0364 -1.6 -9.5 pimeloyl-[acp] methyl ester esterase compare
PP_2414 -1.6 -1.2 conserved exported protein of unknown function compare
PP_2390 -1.5 -9.4 Transcriptional regulator, LysR family compare
PP_4122 -1.5 -2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0366 -1.5 -6.4 dethiobiotin synthetase compare
PP_1366 -1.5 -2.3 Transcriptional regulator MvaT, P16 subunit compare
PP_4099 -1.5 -12.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4922 -1.3 -9.8 Phosphomethylpyrimidine synthase compare
PP_1468 -1.3 -3.6 Tyrosine recombinase XerD compare
PP_4480 -1.3 -8.1 arginine N-succinyltransferase, subunit alpha compare
PP_0914 -1.3 -9.0 GGDEF domain protein compare
PP_4938 -1.2 -7.0 putative Glycosyl transferase compare
PP_3946 -1.2 -2.2 HTH-type transcriptional repressor NicR compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1783 -1.2 -1.7 dTDP-glucose pyrophosphorylase compare
PP_1994 -1.2 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_4936 -1.1 -5.5 O-antigen polymerase compare
PP_5227 -1.1 -5.9 diaminopimelate decarboxylase compare
PP_1734 -1.1 -2.4 Probable septum site-determining protein MinC compare
PP_4699 -1.1 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5628 -1.1 -2.1 conserved protein of unknown function compare
PP_1656 -1.1 -5.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_5350 -1.1 -4.0 Transcriptional regulator, RpiR family compare
PP_1216 -1.1 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0963 -1.0 -2.5 putative BolA family protein compare
PP_2402 -1.0 -2.5 putative Sensor histidine kinase compare
PP_4358 -1.0 -5.5 flagellar synthesis, switching and energizing component compare
PP_1493 -1.0 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0393 -1.0 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4121 -1.0 -4.3 NADH-quinone oxidoreductase subunit C/D compare
PP_4693 -1.0 -4.2 RNA polymerase-binding transcription factor DksA compare
PP_1802 -1.0 -8.2 glycosyl transferase compare
PP_4942 -1.0 -2.1 conserved protein of unknown function compare
PP_4131 -1.0 -4.3 NADH-quinone oxidoreductase subunit N compare
PP_5583 -1.0 -3.0 conserved protein of unknown function compare
PP_1780 -1.0 -8.5 putative mannosyltransferase compare
PP_1348 -0.9 -4.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1804 -0.9 -6.4 Glycosyl transferase WbpL compare
PP_0435 -0.9 -7.4 Peptidase, M23/M37 family compare
PP_5216 -0.9 -1.4 exopolyphosphatase compare
PP_4268 -0.9 -2.0 nucleoid-associated broad specificity regulator compare
PP_5230 -0.9 -3.2 Tyrosine recombinase XerC compare
PP_1805 -0.9 -8.1 Polysaccharide biosynthesis protein compare
PP_1650 -0.9 -6.4 Sensor protein GacS compare
PP_1553 -0.9 -2.0 conserved protein of unknown function compare
PP_4684 -0.9 -5.6 conserved protein of unknown function with kinase-like domain compare
PP_0122 -0.9 -2.4 conserved exported protein of unknown function compare
PP_1776 -0.9 -7.4 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0153 -0.9 -1.9 hypothetical protein compare
PP_1799 -0.9 -7.2 GDP-mannose 4,6-dehydratase compare
PP_5652 -0.9 -2.2 conserved protein of unknown function, phage origin compare
PP_4804 -0.8 -1.9 RlpA-like lipoprotein compare
PP_5145 -0.8 -7.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1801 -0.8 -6.6 Glycosyl transferase WbpY compare
PP_4369 -0.8 -6.1 Flagellar M-ring protein compare
PP_1800 -0.8 -6.1 Oxidoreductase Rmd compare
PP_2976 -0.8 -0.9 putative transposase compare
PP_1426 -0.8 -5.8 L-aspartate oxidase compare
PP_2345 -0.8 -2.3 conserved exported protein of unknown function compare
PP_4058 -0.8 -5.5 1,4-alpha-glucan branching enzyme compare
PP_0022 -0.8 -1.1 hypothetical protein compare
PP_1778 -0.8 -3.3 Lipopolysaccharide ABC export system, permease protein compare
PP_1654 -0.8 -2.5 cysteine synthase B compare
PP_4828 -0.8 -1.3 Precorrin-8X methylmutase compare
PP_2302 -0.8 -4.4 DNA-binding, ATP-dependent protease compare
PP_4695 -0.8 -5.6 Sensory box histidine kinase compare
PP_4481 -0.8 -4.7 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_0261 -0.8 -4.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5528 -0.7 -2.1 conserved protein of unknown function compare
PP_1779 -0.7 -3.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0949 -0.7 -4.0 putative ATP-binding protein UPF0042 compare
PP_3649 -0.7 -1.9 Transcriptional regulator, GntR family compare
PP_1428 -0.7 -1.7 Sigma factor AlgU negative regulatory protein compare
PP_4129 -0.7 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3789 -0.7 -3.0 putative Efflux transporter compare
PP_1128 -0.7 -1.7 OmpA family protein compare
PP_4098 -0.7 -1.0 UvrABC system protein C compare
PP_1770 -0.6 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4952 -0.6 -1.5 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4124 -0.6 -2.8 NADH-quinone oxidoreductase subunit G compare
PP_0833 -0.6 -1.5 queuine tRNA-ribosyltransferase compare
PP_1268 -0.6 -2.8 putative HtrA suppressor protein sohA compare
PP_5486 -0.6 -2.0 conserved protein of unknown function compare
PP_1362 -0.6 -2.4 pyruvate kinase II compare
PP_1346 -0.6 -2.4 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4891 -0.6 -3.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3002 -0.6 -2.8 shikimate dehydrogenase-related enzyme compare
PP_3776 -0.6 -3.4 putative permease (RarD protein) compare
PP_4359 -0.6 -3.4 Flagellar protein FliL compare
PP_3924 -0.6 -2.9 conserved protein of unknown function compare
PP_5094 -0.6 -3.3 putative enzyme with PLP binding domain compare
PP_4120 -0.6 -2.1 NADH-quinone oxidoreductase subunit B compare
PP_3392 -0.6 -1.4 conserved protein of unknown function compare
PP_4792 -0.6 -1.8 conserved exported protein of unknown function compare
PP_1059 -0.6 -4.7 Uncharacterized amino acid permease YtnA compare
PP_0003 -0.6 -1.7 16S RNA methyltransferase compare
PP_3333 -0.6 -1.3 conserved protein of unknown function compare
PP_2029 -0.6 -1.2 von Willebrand factor type A domain protein compare
PP_4368 -0.6 -3.3 flagellar motor switch protein compare
PP_5717 -0.6 -2.1 conserved protein of unknown function compare
PP_3105 -0.6 -2.0 conserved membrane protein of unknown function compare
PP_3035 -0.5 -1.5 conserved protein of unknown function compare
PP_1096 -0.5 -2.0 putative electron transport complex protein compare
PP_5640 -0.5 -2.1 conserved protein of unknown function compare
PP_5279 -0.5 -1.7 conserved protein of unknown function compare
PP_2389 -0.5 -2.1 conserved protein of unknown function compare
PP_1304 -0.5 -3.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1326 -0.5 -2.2 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2168 -0.5 -4.0 Transaldolase compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Alanine in Pseudomonas putida KT2440

For nitrogen source L-Alanine across organisms