Experiment set27IT045 for Pseudomonas putida KT2440

Compare to:

L-Glutamine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.2 -5.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -6.7 -10.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -5.9 -9.9 phosphoserine phosphatase compare
PP_0083 -5.8 -8.0 tryptophan synthase beta chain compare
PP_0082 -5.7 -7.9 tryptophan synthase alpha chain compare
PP_0422 -5.6 -8.6 Indole-3-glycerol phosphate synthase compare
PP_1988 -5.5 -11.9 3-isopropylmalate dehydrogenase compare
PP_0292 -5.4 -5.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4723 -5.4 -16.3 Carbamoyl-phosphate synthase large chain compare
PP_1231 -5.4 -8.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1985 -5.2 -7.2 3-isopropylmalate dehydratase large subunit compare
PP_4724 -5.2 -9.9 Carbamoyl-phosphate synthase small chain compare
PP_0184 -5.0 -8.3 Argininosuccinate lyase compare
PP_1079 -5.0 -8.6 Ornithine carbamoyltransferase compare
PP_4678 -4.9 -17.7 Ketol-acid reductoisomerase compare
PP_5185 -4.9 -8.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0691 -4.9 -4.7 Glutamate 5-kinase compare
PP_3511 -4.8 -13.1 Branched-chain-amino-acid aminotransferase compare
PP_0966 -4.8 -12.1 Histidinol dehydrogenase compare
PP_5014 -4.7 -6.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_4680 -4.7 -19.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0420 -4.7 -13.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0967 -4.7 -11.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1995 -4.6 -13.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -4.6 -15.0 Argininosuccinate synthase compare
PP_1986 -4.5 -5.3 3-isopropylmalate dehydratase small subunit compare
PP_4679 -4.5 -10.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -4.5 -7.4 Acetylglutamate kinase compare
PP_0417 -4.3 -21.7 Anthranilate synthase component 1 compare
PP_3999 -4.2 -8.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0965 -4.1 -11.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5155 -4.0 -4.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4890 -3.9 -8.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_2371 -3.8 -9.8 Sulphite reductase hemoprotein, beta subunit compare
PP_0289 -3.8 -8.0 Imidazoleglycerol-phosphate dehydratase compare
PP_5128 -3.8 -8.1 Dihydroxy-acid dehydratase compare
PP_4700 -3.7 -3.6 pantothenate synthetase compare
PP_0421 -3.6 -8.5 Anthranilate phosphoribosyltransferase compare
PP_5015 -3.5 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_0787 -3.5 -5.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0127 -3.3 -9.2 Thiol:disulfide interchange protein compare
PP_5097 -3.3 -15.7 homoserine O-acetyltransferase compare
PP_1025 -3.2 -10.0 2-isopropylmalate synthase compare
PP_2001 -3.1 -10.1 O-succinylhomoserine sulfhydrylase compare
PP_4364 -3.1 -5.9 putative Anti-sigma F factor antagonist compare
PP_0339 -3.1 -5.1 Pyruvate dehydrogenase E1 component compare
PP_5098 -3.1 -8.7 methionine biosynthesis protein MetW compare
PP_2328 -3.0 -9.1 Phosphoadenosine phosphosulfate reductase compare
PP_2370 -2.9 -3.1 conserved protein of unknown function compare
PP_5303 -2.9 -6.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2327 -2.8 -6.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1022 -2.7 -5.9 glucose 6-phosphate-1-dehydrogenase compare
PP_1664 -2.5 -5.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_4943 -2.4 -3.6 putative Glycosyl transferase compare
PP_1215 -2.4 -2.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_0809 -2.4 -12.1 disulfide bond formation protein B compare
PP_0291 -2.3 -2.3 conserved protein of unknown function compare
PP_0735 -2.2 -2.1 molybdopterin-synthase adenylyltransferase compare
PP_0164 -1.9 -7.1 conserved protein of unknown function compare
PP_3484 -1.9 -4.6 Response regulator receiver protein compare
PP_4696 -1.9 -7.1 Nitrogen regulation protein NR(I) compare
PP_4910 -1.8 -3.1 conserved protein of unknown function compare
PP_3790 -1.7 -10.8 diaminopimelate epimerase compare
PP_1770 -1.7 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0719 -1.6 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1217 -1.6 -5.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2388 -1.6 -4.6 Transporter, LysE family compare
PP_1912 -1.5 -6.9 Phosphate acyltransferase compare
PP_5104 -1.4 -8.5 thiazole synthase compare
PP_4964 -1.4 -3.0 D-erythrose 4-phosphate dehydrogenase compare
PP_1994 -1.4 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_2390 -1.3 -8.0 Transcriptional regulator, LysR family compare
PP_4004 -1.3 -3.9 DNA translocase FtsK compare
PP_1233 -1.3 -5.0 sulfurtransferase compare
PP_5338 -1.3 -2.1 aspartate ammonia-lyase compare
PP_1426 -1.3 -10.1 L-aspartate oxidase compare
PP_2378 -1.3 -2.5 Fe/S biogenesis protein NfuA compare
PP_4874 -1.3 -1.7 50S ribosomal protein L9 compare
PP_2414 -1.2 -1.8 conserved exported protein of unknown function compare
PP_5216 -1.2 -1.8 exopolyphosphatase compare
PP_0393 -1.2 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5328 -1.2 -2.7 putative phosphate transport system permease protein compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5095 -1.1 -1.5 pyrroline-5-carboxylate reductase compare
PP_1439 -1.1 -3.0 conserved exported protein of unknown function compare
PP_4922 -1.1 -8.2 Phosphomethylpyrimidine synthase compare
PP_1216 -1.1 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5346 -1.1 -6.6 pyruvate carboxylase subunit B compare
PP_1493 -1.1 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5347 -1.1 -7.6 pyruvate carboxylase subunit A compare
PP_4782 -1.1 -4.5 Phosphomethylpyrimidine kinase compare
PP_1055 -1.0 -1.5 Type II secretion pathway protein GspN compare
PP_1362 -1.0 -3.2 pyruvate kinase II compare
PP_0846 -1.0 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_4804 -1.0 -1.9 RlpA-like lipoprotein compare
PP_5348 -1.0 -6.6 Transcriptional regulator, LysR family compare
PP_4684 -1.0 -4.9 conserved protein of unknown function with kinase-like domain compare
PP_5453 -1.0 -1.6 conserved protein of unknown function compare
PP_0833 -1.0 -2.2 queuine tRNA-ribosyltransferase compare
PP_1110 -1.0 -2.9 serine acetyltransferase compare
PP_5227 -1.0 -5.7 diaminopimelate decarboxylase compare
PP_1036 -1.0 -3.6 membrane-bound lytic murein transglycosylase F compare
PP_1733 -0.9 -1.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_1468 -0.9 -2.8 Tyrosine recombinase XerD compare
PP_4944 -0.9 -2.5 Carbamoyltransferase compare
PP_2203 -0.9 -2.2 conserved protein of unknown function compare
PP_0362 -0.9 -6.7 Biotin synthase compare
PP_1348 -0.8 -5.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3102 -0.8 -2.8 conserved protein of unknown function compare
PP_1066 -0.8 -3.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_3821 -0.8 -5.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0435 -0.8 -6.5 Peptidase, M23/M37 family compare
PP_5583 -0.8 -2.5 conserved protein of unknown function compare
PP_3105 -0.8 -1.4 conserved membrane protein of unknown function compare
PP_0963 -0.8 -1.7 putative BolA family protein compare
PP_4937 -0.8 -2.1 toluene tolerance protein compare
PP_1734 -0.8 -1.6 Probable septum site-determining protein MinC compare
PP_3892 -0.8 -1.9 conserved protein of unknown function compare
PP_3649 -0.7 -2.2 Transcriptional regulator, GntR family compare
PP_0003 -0.7 -1.6 16S RNA methyltransferase compare
PP_0022 -0.7 -1.0 hypothetical protein compare
PP_3590 -0.7 -4.8 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4984 -0.7 -5.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1304 -0.7 -4.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3789 -0.7 -3.8 putative Efflux transporter compare
PP_1654 -0.7 -2.8 cysteine synthase B compare
PP_0695 -0.7 -3.4 conserved protein of unknown function compare
PP_2668 -0.7 -1.9 ABC efflux transporter, ATP-binding protein compare
PP_5329 -0.7 -1.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0364 -0.7 -5.0 pimeloyl-[acp] methyl ester esterase compare
PP_0914 -0.7 -5.1 GGDEF domain protein compare
PP_5327 -0.7 -1.5 putative phosphate ABC transporter, permease subunit compare
PP_4481 -0.7 -3.8 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_0363 -0.7 -4.6 8-amino-7-oxononanoate synthase compare
PP_1716 -0.7 -1.9 Transcriptional regulator, Cro/CI family compare
PP_2899 -0.6 -1.6 conserved exported protein of unknown function compare
PP_3411 -0.6 -1.7 conserved protein of unknown function compare
PP_3924 -0.6 -3.0 conserved protein of unknown function compare
PP_4895 -0.6 -1.7 tRNA dimethylallyltransferase compare
PP_2633 -0.6 -1.3 conserved protein of unknown function compare
PP_5114 -0.6 -1.0 putative adenine methyltransferase compare
PP_5350 -0.6 -2.4 Transcriptional regulator, RpiR family compare
PP_4699 -0.6 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2168 -0.6 -4.5 Transaldolase compare
PP_0593 -0.6 -1.0 putative ribosome-binding factor compare
PP_1783 -0.6 -1.1 dTDP-glucose pyrophosphorylase compare
PP_4695 -0.6 -4.6 Sensory box histidine kinase compare
PP_5331 -0.6 -1.7 Long-chain acyl-CoA thioester hydrolase compare
PP_5090 -0.6 -1.4 putative cell division protein compare
PP_0888 -0.6 -1.0 Photosynthetic apparatus regulatory protein RegA compare
PP_4387 -0.6 -2.4 conserved exported protein of unknown function compare
PP_2794 -0.6 -1.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1109 -0.6 -5.0 Transcriptional regulator, GntR family compare
PP_0365 -0.6 -4.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2750 -0.6 -1.9 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_5352 -0.6 -4.4 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_2929 -0.6 -3.5 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2029 -0.6 -1.9 von Willebrand factor type A domain protein compare
PP_1045 -0.6 -1.2 Type II secretion pathway protein XcpP compare
PP_1637 -0.6 -2.6 Transcriptional regulator, LysR family compare
PP_1293 -0.6 -1.4 molybdopterin synthase small subunit compare
PP_4591 -0.6 -2.8 Ribonuclease D compare
PP_1038 -0.6 -1.0 conserved protein of unknown function compare
PP_0116 -0.5 -3.3 putative lipoprotein compare
PP_2442 -0.5 -1.2 conserved protein of unknown function, DUF480 family compare
PP_0197 -0.5 -3.2 conserved protein of unknown function compare
PP_5528 -0.5 -1.3 conserved protein of unknown function compare
PP_2880 -0.5 -1.4 Transcriptional regulator, TetR family compare
PP_2908 -0.5 -2.6 DNA-binding transcriptional repressor compare
PP_4891 -0.5 -2.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0694 -0.5 -3.0 conserved protein of unknown function compare
PP_4555 -0.5 -2.1 conserved protein of unknown function compare
PP_2341 -0.5 -1.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1300 -0.5 -2.3 putative amino acid ABC transporter - ATP-binding subunit compare
PP_4722 -0.5 -2.3 Transcription elongation factor GreA compare
PP_4251 -0.5 -2.1 cytochrome c oxidase subunit, cbb3-type compare
PP_4379 -0.5 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1128 -0.5 -1.6 OmpA family protein compare
PP_0137 -0.5 -3.8 glutamate/aspartate-proton DAACS transporter compare
PP_1020 -0.5 -1.2 putative glucose-6-phosphate 1-epimerase compare
PP_4377 -0.5 -3.0 putative Flagellin FlaG compare
PP_3508 -0.5 -2.4 Protein CobW compare
PP_4575 -0.5 -2.3 Urea amidolyase-related protein compare
PP_0261 -0.5 -2.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4180 -0.5 -2.5 conserved protein of unknown function compare
PP_5028 -0.5 -1.8 proline iminopeptidase compare
PP_3505 -0.5 -1.2 conserved protein of unknown function compare
PP_4811 -0.5 -1.9 Gamma-glutamyl phosphate reductase compare
PP_2406 -0.5 -2.8 putative quinate/shikimate dehydrogenase compare
PP_4531 -0.5 -2.5 conserved exported protein of unknown function compare
PP_4941 -0.5 -2.4 conserved exported protein of unknown function compare
PP_1589 -0.5 -3.0 uridylyltransferase compare
PP_3730 -0.5 -1.1 Transcriptional regulatory protein AruR compare
PP_1176 -0.5 -0.9 conserved protein of unknown function compare
PP_1764 -0.5 -2.7 Phosphoglycolate phosphatase 2 compare
PP_1303 -0.5 -3.1 Sulfate adenylyltransferase subunit 2 compare
PP_t10 -0.5 -1.4 tRNA-Pro compare
PP_1041 -0.5 -1.4 twin arginine protein export complex subunit compare
PP_4337 -0.5 -3.0 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source L-Glutamine across organisms