Experiment set27IT044 for Pseudomonas putida KT2440

Compare to:

L-Glutamine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4909 -6.9 -8.2 phosphoserine phosphatase compare
PP_0966 -5.8 -16.8 Histidinol dehydrogenase compare
PP_1988 -5.7 -12.5 3-isopropylmalate dehydrogenase compare
PP_0293 -5.6 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1985 -5.6 -8.3 3-isopropylmalate dehydratase large subunit compare
PP_4723 -5.4 -17.7 Carbamoyl-phosphate synthase large chain compare
PP_4678 -5.3 -20.1 Ketol-acid reductoisomerase compare
PP_4724 -5.3 -9.5 Carbamoyl-phosphate synthase small chain compare
PP_0290 -5.2 -10.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0083 -5.2 -10.6 tryptophan synthase beta chain compare
PP_0082 -5.2 -9.9 tryptophan synthase alpha chain compare
PP_0422 -5.0 -6.4 Indole-3-glycerol phosphate synthase compare
PP_4680 -4.9 -19.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -4.9 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_4679 -4.9 -10.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0420 -4.8 -15.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0967 -4.7 -12.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1088 -4.7 -16.3 Argininosuccinate synthase compare
PP_1231 -4.7 -10.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1995 -4.7 -12.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1986 -4.5 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_0184 -4.5 -10.0 Argininosuccinate lyase compare
PP_5185 -4.5 -10.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5014 -4.4 -6.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_3511 -4.4 -13.0 Branched-chain-amino-acid aminotransferase compare
PP_0965 -4.4 -12.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0417 -4.4 -19.9 Anthranilate synthase component 1 compare
PP_5289 -4.3 -6.5 Acetylglutamate kinase compare
PP_3999 -4.2 -9.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0421 -4.1 -8.9 Anthranilate phosphoribosyltransferase compare
PP_1079 -4.1 -8.0 Ornithine carbamoyltransferase compare
PP_0289 -4.0 -8.7 Imidazoleglycerol-phosphate dehydratase compare
PP_4700 -3.9 -3.8 pantothenate synthetase compare
PP_0292 -3.8 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5128 -3.8 -10.3 Dihydroxy-acid dehydratase compare
PP_5015 -3.8 -8.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5155 -3.7 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0691 -3.7 -6.2 Glutamate 5-kinase compare
PP_4999 -3.7 -2.5 dihydroorotase-like protein compare
PP_2371 -3.6 -9.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1025 -3.3 -11.9 2-isopropylmalate synthase compare
PP_5097 -3.3 -19.6 homoserine O-acetyltransferase compare
PP_5098 -3.2 -11.8 methionine biosynthesis protein MetW compare
PP_0339 -3.0 -6.1 Pyruvate dehydrogenase E1 component compare
PP_0787 -2.9 -8.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2001 -2.9 -13.9 O-succinylhomoserine sulfhydrylase compare
PP_4696 -2.8 -8.1 Nitrogen regulation protein NR(I) compare
PP_2328 -2.7 -8.8 Phosphoadenosine phosphosulfate reductase compare
PP_4364 -2.7 -6.5 putative Anti-sigma F factor antagonist compare
PP_0127 -2.6 -9.4 Thiol:disulfide interchange protein compare
PP_2370 -2.5 -3.0 conserved protein of unknown function compare
PP_1022 -2.4 -7.8 glucose 6-phosphate-1-dehydrogenase compare
PP_5303 -2.4 -7.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2327 -2.3 -10.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0291 -2.3 -2.7 conserved protein of unknown function compare
PP_1664 -2.2 -5.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_0809 -1.8 -11.7 disulfide bond formation protein B compare
PP_0719 -1.8 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0164 -1.7 -7.3 conserved protein of unknown function compare
PP_3105 -1.6 -3.5 conserved membrane protein of unknown function compare
PP_1215 -1.6 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_4964 -1.6 -3.4 D-erythrose 4-phosphate dehydrogenase compare
PP_2414 -1.6 -2.6 conserved exported protein of unknown function compare
PP_2378 -1.5 -3.0 Fe/S biogenesis protein NfuA compare
PP_4910 -1.5 -1.7 conserved protein of unknown function compare
PP_1233 -1.5 -5.9 sulfurtransferase compare
PP_0593 -1.5 -2.0 putative ribosome-binding factor compare
PP_5104 -1.4 -8.6 thiazole synthase compare
PP_5095 -1.4 -1.8 pyrroline-5-carboxylate reductase compare
PP_1912 -1.4 -6.7 Phosphate acyltransferase compare
PP_3790 -1.4 -7.4 diaminopimelate epimerase compare
PP_1348 -1.4 -4.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3484 -1.3 -4.7 Response regulator receiver protein compare
PP_1468 -1.3 -3.7 Tyrosine recombinase XerD compare
PP_2390 -1.3 -7.1 Transcriptional regulator, LysR family compare
PP_2388 -1.2 -4.7 Transporter, LysE family compare
PP_1770 -1.2 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1426 -1.2 -9.0 L-aspartate oxidase compare
PP_1217 -1.1 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4922 -1.1 -8.4 Phosphomethylpyrimidine synthase compare
PP_0393 -1.1 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1110 -1.1 -4.0 serine acetyltransferase compare
PP_0735 -1.1 -2.6 molybdopterin-synthase adenylyltransferase compare
PP_1553 -1.1 -1.6 conserved protein of unknown function compare
PP_5621 -1.0 -3.4 protein of unknown function compare
PP_1362 -1.0 -3.5 pyruvate kinase II compare
PP_4799 -1.0 -1.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5216 -1.0 -1.5 exopolyphosphatase compare
PP_4943 -0.9 -2.4 putative Glycosyl transferase compare
PP_5628 -0.9 -2.6 conserved protein of unknown function compare
PP_1493 -0.9 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3946 -0.9 -1.4 HTH-type transcriptional repressor NicR compare
PP_5346 -0.9 -5.5 pyruvate carboxylase subunit B compare
PP_1216 -0.9 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3892 -0.9 -2.3 conserved protein of unknown function compare
PP_5347 -0.9 -7.1 pyruvate carboxylase subunit A compare
PP_4782 -0.9 -3.9 Phosphomethylpyrimidine kinase compare
PP_4828 -0.9 -1.8 Precorrin-8X methylmutase compare
PP_0362 -0.9 -6.9 Biotin synthase compare
PP_3789 -0.8 -4.5 putative Efflux transporter compare
PP_0833 -0.8 -2.0 queuine tRNA-ribosyltransferase compare
PP_1637 -0.8 -3.8 Transcriptional regulator, LysR family compare
PP_5350 -0.8 -3.4 Transcriptional regulator, RpiR family compare
PP_5331 -0.8 -2.0 Long-chain acyl-CoA thioester hydrolase compare
PP_4684 -0.8 -4.9 conserved protein of unknown function with kinase-like domain compare
PP_5328 -0.8 -2.1 putative phosphate transport system permease protein compare
PP_0001 -0.8 -1.0 probable chromosome-partitioning protein compare
PP_5227 -0.7 -4.7 diaminopimelate decarboxylase compare
PP_1128 -0.7 -1.5 OmpA family protein compare
PP_4695 -0.7 -5.5 Sensory box histidine kinase compare
PP_5453 -0.7 -2.1 conserved protein of unknown function compare
PP_5017 -0.7 -1.6 Sec-independent protein translocase protein TatB compare
PP_3417 -0.7 -3.2 D-gluconate transporter compare
PP_4804 -0.7 -1.8 RlpA-like lipoprotein compare
PP_0846 -0.7 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_5348 -0.7 -4.4 Transcriptional regulator, LysR family compare
PP_4159 -0.7 -1.8 Potassium-transporting ATPase C chain compare
PP_4917 -0.7 -2.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4126 -0.7 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_3590 -0.7 -5.0 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_5338 -0.7 -1.4 aspartate ammonia-lyase compare
PP_0365 -0.7 -5.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0003 -0.6 -2.4 16S RNA methyltransferase compare
PP_3248 -0.6 -1.2 Dyp-type peroxidase family protein compare
PP_4479 -0.6 -2.9 arginine N-succinyltransferase, subunit beta compare
PP_0914 -0.6 -5.0 GGDEF domain protein compare
PP_4891 -0.6 -3.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4880 -0.6 -2.5 exoribonuclease R compare
PP_5230 -0.6 -2.6 Tyrosine recombinase XerC compare
PP_3505 -0.6 -1.9 conserved protein of unknown function compare
PP_4004 -0.6 -2.0 DNA translocase FtsK compare
PP_1214 -0.6 -1.7 putative transcriptional regulatory protein compare
PP_5486 -0.6 -1.7 conserved protein of unknown function compare
PP_4120 -0.6 -2.3 NADH-quinone oxidoreductase subunit B compare
PP_3241 -0.6 -1.3 conserved exported protein of unknown function compare
PP_3924 -0.6 -3.1 conserved protein of unknown function compare
PP_4848 -0.6 -1.6 Curved DNA-binding protein compare
PP_2345 -0.6 -1.5 conserved exported protein of unknown function compare
PP_5717 -0.6 -1.1 conserved protein of unknown function compare
PP_4379 -0.6 -3.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4792 -0.6 -2.0 conserved exported protein of unknown function compare
PP_0435 -0.6 -5.0 Peptidase, M23/M37 family compare
PP_1186 -0.6 -1.5 two component system DNA-binding transcriptional dual regulator compare
PP_2088 -0.6 -2.4 RNA polymerase sigma factor SigX compare
PP_4944 -0.6 -1.9 Carbamoyltransferase compare
PP_5352 -0.6 -4.3 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_3971 -0.6 -1.4 conserved protein of unknown function compare
PP_0566 -0.6 -1.0 translation-related factor compare
PP_2402 -0.6 -1.5 putative Sensor histidine kinase compare
PP_4831 -0.6 -3.0 putative cobalt-precorrin-6A synthase compare
PP_1734 -0.6 -1.5 Probable septum site-determining protein MinC compare
PP_4984 -0.6 -4.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1528 -0.5 -1.2 conserved protein of unknown function compare
PP_3201 -0.5 -2.3 BNR domain protein compare
PP_1067 -0.5 -4.4 Sensor histidine kinase compare
PP_1654 -0.5 -1.8 cysteine synthase B compare
PP_1304 -0.5 -3.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5035 -0.5 -3.4 Histidine utilization repressor compare
PP_4942 -0.5 -1.4 conserved protein of unknown function compare
PP_1109 -0.5 -4.2 Transcriptional regulator, GntR family compare
PP_1681 -0.5 -4.1 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1066 -0.5 -2.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0137 -0.5 -3.8 glutamate/aspartate-proton DAACS transporter compare
PP_0834 -0.5 -1.3 Sec translocation complex subunit YajC compare
PP_0758 -0.5 -2.8 conserved protein of unknown function compare
PP_5028 -0.5 -2.1 proline iminopeptidase compare
PP_5604 -0.5 -1.1 putative subtilisin-like serine protease compare
PP_0278 -0.5 -2.1 conserved protein of unknown function compare
PP_4699 -0.5 -1.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0363 -0.5 -4.0 8-amino-7-oxononanoate synthase compare
PP_3821 -0.5 -3.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4847 -0.5 -1.7 chaperone modulatory of CbpA co-chaperone protein compare
PP_1026 -0.5 -2.3 Peptidase, M23/M37 family compare
PP_2168 -0.5 -3.7 Transaldolase compare
PP_4340 -0.5 -2.7 response regulator for chemotactic signal transduction compare
PP_2243 -0.5 -2.0 conserved protein of unknown function compare
PP_1268 -0.5 -2.2 putative HtrA suppressor protein sohA compare
PP_1629 -0.5 -2.1 Protein RecA compare
PP_2633 -0.5 -1.5 conserved protein of unknown function compare
PP_4058 -0.5 -3.6 1,4-alpha-glucan branching enzyme compare
PP_4874 -0.5 -0.8 50S ribosomal protein L9 compare
PP_3312 -0.5 -1.6 putative Heat shock protein compare
PP_2322 -0.5 -2.6 Major outer membrane lipoprotein compare
PP_0366 -0.5 -3.0 dethiobiotin synthetase compare
PP_2773 -0.5 -1.4 conserved protein of unknown function compare
PP_2658 -0.5 -1.7 phosphate ABC transporter compare
PP_0261 -0.5 -3.2 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1733 -0.5 -1.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_0888 -0.5 -0.6 Photosynthetic apparatus regulatory protein RegA compare
PP_3914 -0.5 -2.8 conserved protein of unknown function compare
PP_3899 -0.5 -1.3 conserved protein of unknown function, hicB family compare
PP_1071 -0.5 -2.4 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_0695 -0.5 -2.3 conserved protein of unknown function compare
PP_0832 -0.5 -1.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0703 -0.5 -2.0 putative Transmembrane sensor compare
PP_4739 -0.4 -1.7 conserved protein of unknown function compare
PP_1789 -0.4 -2.9 Hydrolase, haloacid dehalogenase-like family compare
PP_4253 -0.4 -2.4 cytochrome c oxidase subunit, cbb3-type compare
PP_3020 -0.4 -2.4 putative Serine/threonine protein phosphatase compare
PP_3392 -0.4 -1.4 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source L-Glutamine across organisms