Experiment set27IT042 for Pseudomonas putida KT2440

Compare to:

L-Ornithine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_3511 -7.4 -8.8 Branched-chain-amino-acid aminotransferase compare
PP_0293 -7.2 -4.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0422 -7.1 -6.9 Indole-3-glycerol phosphate synthase compare
PP_1985 -7.1 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_0966 -6.8 -13.0 Histidinol dehydrogenase compare
PP_1986 -6.6 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_0290 -6.5 -10.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1988 -6.5 -10.8 3-isopropylmalate dehydrogenase compare
PP_4680 -6.5 -16.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -6.4 -17.2 Ketol-acid reductoisomerase compare
PP_5097 -6.4 -16.6 homoserine O-acetyltransferase compare
PP_4723 -6.0 -14.0 Carbamoyl-phosphate synthase large chain compare
PP_0082 -5.9 -7.1 tryptophan synthase alpha chain compare
PP_5075 -5.9 -17.0 glutamate synthase (NADPH) beta subunit compare
PP_5014 -5.8 -5.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0083 -5.6 -7.7 tryptophan synthase beta chain compare
PP_4679 -5.6 -9.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2168 -5.6 -15.3 Transaldolase compare
PP_4909 -5.6 -10.7 phosphoserine phosphatase compare
PP_0965 -5.6 -11.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0420 -5.5 -15.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0967 -5.5 -13.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5098 -5.5 -11.2 methionine biosynthesis protein MetW compare
PP_1110 -5.5 -3.8 serine acetyltransferase compare
PP_5076 -5.5 -24.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_0417 -5.5 -22.8 Anthranilate synthase component 1 compare
PP_2088 -5.3 -7.9 RNA polymerase sigma factor SigX compare
PP_4947 -5.3 -21.9 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_5047 -5.2 -11.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1995 -5.1 -13.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4724 -5.1 -9.2 Carbamoyl-phosphate synthase small chain compare
PP_0787 -5.0 -6.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2001 -5.0 -9.4 O-succinylhomoserine sulfhydrylase compare
PP_0184 -5.0 -8.4 Argininosuccinate lyase compare
PP_2371 -4.9 -9.3 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -4.8 -6.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5015 -4.7 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2327 -4.7 -9.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5048 -4.6 -9.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5128 -4.6 -8.3 Dihydroxy-acid dehydratase compare
PP_0421 -4.6 -8.4 Anthranilate phosphoribosyltransferase compare
PP_0289 -4.5 -8.4 Imidazoleglycerol-phosphate dehydratase compare
PP_4890 -4.2 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_4700 -4.1 -2.8 pantothenate synthetase compare
PP_1088 -4.0 -15.5 Argininosuccinate synthase compare
PP_1589 -3.9 -12.5 uridylyltransferase compare
PP_2370 -3.7 -5.1 conserved protein of unknown function compare
PP_0292 -3.7 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4696 -3.7 -8.3 Nitrogen regulation protein NR(I) compare
PP_1231 -3.7 -6.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0339 -3.7 -3.5 Pyruvate dehydrogenase E1 component compare
PP_5155 -3.6 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_5095 -3.4 -2.3 pyrroline-5-carboxylate reductase compare
PP_1109 -3.4 -14.0 Transcriptional regulator, GntR family compare
PP_1111 -3.3 -9.0 putative Synthetase compare
PP_1022 -3.3 -7.1 glucose 6-phosphate-1-dehydrogenase compare
PP_2328 -3.2 -8.8 Phosphoadenosine phosphosulfate reductase compare
PP_1025 -3.2 -8.4 2-isopropylmalate synthase compare
PP_5303 -3.1 -7.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1654 -3.0 -6.9 cysteine synthase B compare
PP_3790 -2.8 -12.7 diaminopimelate epimerase compare
PP_1664 -2.7 -6.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1912 -2.5 -8.0 Phosphate acyltransferase compare
PP_4782 -2.4 -6.8 Phosphomethylpyrimidine kinase compare
PP_4478 -2.4 -6.6 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_1217 -2.4 -5.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1215 -2.3 -2.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_1366 -2.3 -2.4 Transcriptional regulator MvaT, P16 subunit compare
PP_5217 -2.2 -16.6 Polyphosphate kinase compare
PP_1233 -2.2 -6.6 sulfurtransferase compare
PP_2402 -2.2 -3.3 putative Sensor histidine kinase compare
PP_5104 -2.1 -9.2 thiazole synthase compare
PP_4364 -2.1 -8.4 putative Anti-sigma F factor antagonist compare
PP_0291 -1.9 -1.8 conserved protein of unknown function compare
PP_1079 -1.9 -8.7 Ornithine carbamoyltransferase compare
PP_4482 -1.8 -5.4 Transcriptional regulator, AraC family compare
PP_5347 -1.8 -11.1 pyruvate carboxylase subunit A compare
PP_3776 -1.7 -9.8 putative permease (RarD protein) compare
PP_5346 -1.7 -9.0 pyruvate carboxylase subunit B compare
PP_1216 -1.7 -3.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0833 -1.7 -3.0 queuine tRNA-ribosyltransferase compare
PP_0435 -1.7 -12.0 Peptidase, M23/M37 family compare
PP_4864 -1.6 -11.2 High-affinity branched-chain amino acid transport ATP-binding protein BraF compare
PP_4922 -1.6 -10.8 Phosphomethylpyrimidine synthase compare
PP_4866 -1.6 -11.3 High-affinity branched-chain amino acid transport system permease protein BraD compare
PP_4865 -1.6 -11.0 High-affinity branched-chain amino acid transport system permease protein BraE compare
PP_4863 -1.6 -11.1 high-affinity branched-chain amino acid transporter, ATP-binding compare
PP_5230 -1.6 -4.0 Tyrosine recombinase XerC compare
PP_4701 -1.5 -1.8 glucose-6-phosphate isomerase compare
PP_1426 -1.5 -10.7 L-aspartate oxidase compare
PP_4867 -1.5 -9.6 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) compare
PP_1468 -1.5 -3.8 Tyrosine recombinase XerD compare
PP_3376 -1.5 -5.8 putative phosphonate dehydrogenase compare
PP_0735 -1.5 -2.6 molybdopterin-synthase adenylyltransferase compare
PP_5350 -1.4 -4.1 Transcriptional regulator, RpiR family compare
PP_2145 -1.4 -5.0 beta-N-acetylglucosaminidase compare
PP_4693 -1.4 -3.9 RNA polymerase-binding transcription factor DksA compare
PP_5227 -1.4 -6.9 diaminopimelate decarboxylase compare
PP_1348 -1.4 -7.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0691 -1.4 -4.0 Glutamate 5-kinase compare
PP_4699 -1.4 -5.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4684 -1.3 -6.8 conserved protein of unknown function with kinase-like domain compare
PP_4642 -1.3 -1.6 Cyclic diguanosine monophosphate-binding protein compare
PP_2414 -1.3 -1.3 conserved exported protein of unknown function compare
PP_1142 -1.3 -2.0 conserved protein of unknown function compare
PP_0405 -1.3 -9.2 conserved protein of unknown function compare
PP_4993 -1.3 -3.3 Glutathione synthetase compare
PP_5348 -1.2 -7.7 Transcriptional regulator, LysR family compare
PP_0127 -1.2 -6.0 Thiol:disulfide interchange protein compare
PP_5028 -1.2 -3.8 proline iminopeptidase compare
PP_0434 -1.2 -6.3 Anhydro-N-acetylmuramic acid kinase compare
PP_4964 -1.2 -2.8 D-erythrose 4-phosphate dehydrogenase compare
PP_1362 -1.2 -4.3 pyruvate kinase II compare
PP_1300 -1.2 -5.4 putative amino acid ABC transporter - ATP-binding subunit compare
PP_1355 -1.1 -9.3 Muropeptide permease AmpG compare
PP_4799 -1.1 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4824 -1.1 -5.2 Sensor histidine kinase/response regulator compare
PP_1764 -1.1 -3.9 Phosphoglycolate phosphatase 2 compare
PP_2429 -1.1 -2.5 putative Membrane protein compare
PP_4695 -1.1 -6.9 Sensory box histidine kinase compare
PP_1733 -1.1 -1.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_2378 -1.0 -2.1 Fe/S biogenesis protein NfuA compare
PP_0406 -1.0 -3.8 Nucleotidyltransferase family protein compare
PP_0719 -1.0 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3105 -1.0 -2.5 conserved membrane protein of unknown function compare
PP_4098 -1.0 -1.7 UvrABC system protein C compare
PP_0888 -1.0 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_3508 -1.0 -3.4 Protein CobW compare
PP_1381 -1.0 -2.0 4-carboxymuconolactone decarboxylase compare
PP_4058 -1.0 -7.0 1,4-alpha-glucan branching enzyme compare
PP_3378 -1.0 -1.6 putative 2-ketogluconokinase compare
PP_5628 -0.9 -1.4 conserved protein of unknown function compare
PP_2929 -0.9 -5.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3532 -0.9 -2.1 Transcriptional regulator, AsnC family compare
PP_3519 -0.9 -1.4 putative Lipoprotein compare
PP_3880 -0.9 -2.0 conserved exported protein of unknown function compare
PP_0001 -0.9 -1.4 probable chromosome-partitioning protein compare
PP_0362 -0.9 -6.8 Biotin synthase compare
PP_1303 -0.9 -5.6 Sulfate adenylyltransferase subunit 2 compare
PP_4004 -0.9 -2.9 DNA translocase FtsK compare
PP_0281 -0.9 -5.3 Amino acid ABC transporter, permease protein compare
PP_4942 -0.9 -1.7 conserved protein of unknown function compare
PP_5216 -0.9 -1.9 exopolyphosphatase compare
PP_4008 -0.8 -5.0 ATP-dependent serine protease compare
PP_4681 -0.8 -2.2 conserved protein of unknown function compare
PP_0003 -0.8 -2.2 16S RNA methyltransferase compare
PP_3533 -0.8 -5.3 putative ornithine cyclodeaminase compare
PP_3789 -0.8 -3.7 putative Efflux transporter compare
PP_5328 -0.8 -2.0 putative phosphate transport system permease protein compare
PP_0164 -0.8 -3.8 conserved protein of unknown function compare
PP_0846 -0.8 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_1404 -0.8 -1.7 conserved protein of unknown function compare
PP_1304 -0.8 -4.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4792 -0.8 -1.7 conserved exported protein of unknown function compare
PP_1297 -0.8 -5.7 putative amino-acid ABC transporter-binding protein YhdW compare
PP_3595 -0.7 -5.4 L-lysine and D-lysine ABC transporter, permease component 2 (from data) compare
PP_5236 -0.7 -5.3 conserved protein of unknown function compare
PP_1298 -0.7 -5.3 putative amino acid ABC transporter - permease subunit compare
PP_0393 -0.7 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5486 -0.7 -0.9 conserved protein of unknown function compare
PP_1783 -0.7 -1.3 dTDP-glucose pyrophosphorylase compare
PP_0261 -0.7 -3.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5331 -0.7 -2.3 Long-chain acyl-CoA thioester hydrolase compare
PP_4804 -0.7 -1.7 RlpA-like lipoprotein compare
PP_0276 -0.7 -1.3 Transcriptional regulator, Cro/CI family compare
PP_3102 -0.7 -3.1 conserved protein of unknown function compare
PP_0834 -0.7 -1.4 Sec translocation complex subunit YajC compare
PP_4874 -0.7 -1.1 50S ribosomal protein L9 compare
PP_1326 -0.7 -2.8 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4124 -0.7 -2.8 NADH-quinone oxidoreductase subunit G compare
PP_1493 -0.7 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2302 -0.7 -3.9 DNA-binding, ATP-dependent protease compare
PP_3506 -0.7 -2.7 Magnesium chelatase, subunit ChII compare
PP_1679 -0.7 -2.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3777 -0.7 -4.0 conserved protein of unknown function compare
PP_4121 -0.7 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_4880 -0.7 -2.3 exoribonuclease R compare
PP_0809 -0.6 -4.9 disulfide bond formation protein B compare
PP_2181 -0.6 -2.8 Transcriptional regulator, Cro/CI family compare
PP_1128 -0.6 -1.0 OmpA family protein compare
PP_4207 -0.6 -1.9 conserved protein of unknown function compare
PP_1063 -0.6 -4.4 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_1609 -0.6 -1.7 conserved protein of unknown function compare
PP_0377 -0.6 -1.6 coenzyme PQQ synthesis protein D compare
PP_2773 -0.6 -1.8 conserved protein of unknown function compare
PP_2324 -0.6 -3.4 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4377 -0.6 -2.8 putative Flagellin FlaG compare
PP_4895 -0.6 -1.7 tRNA dimethylallyltransferase compare
PP_1299 -0.6 -4.1 putative amino acid ABC transporter - membrane subunit compare
PP_3693 -0.6 -3.0 putative Transcriptional regulator MvaT, P16 subunit compare
PP_4591 -0.6 -2.8 Ribonuclease D compare
PP_3787 -0.6 -4.0 conserved protein of unknown function compare
PP_3593 -0.6 -3.9 L-lysine and D-lysine ABC transporter, substrate-binding component (from data) compare
PP_4131 -0.6 -3.0 NADH-quinone oxidoreductase subunit N compare
PP_3098 -0.6 -1.2 conserved protein of unknown function compare
PP_3649 -0.6 -1.8 Transcriptional regulator, GntR family compare
PP_4997 -0.6 -1.4 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_2203 -0.6 -1.1 conserved protein of unknown function compare
PP_3411 -0.6 -1.5 conserved protein of unknown function compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source L-Ornithine in Pseudomonas putida KT2440

For nitrogen source L-Ornithine across organisms