Experiment set27IT041 for Pseudomonas putida KT2440

Compare to:

Beta-alanine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0595 -7.9 -5.5 Transcriptional regulator, LysR family compare
PP_0596 -7.5 -11.5 Omega-amino acid--pyruvate aminotransferase conserved
PP_0293 -7.3 -5.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4724 -7.2 -5.0 Carbamoyl-phosphate synthase small chain compare
PP_4909 -7.1 -6.9 phosphoserine phosphatase compare
PP_1995 -7.0 -9.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0422 -6.8 -8.1 Indole-3-glycerol phosphate synthase compare
PP_1231 -6.8 -8.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0082 -6.7 -4.6 tryptophan synthase alpha chain compare
PP_1985 -6.7 -6.5 3-isopropylmalate dehydratase large subunit compare
PP_5014 -6.7 -4.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_0292 -6.7 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0290 -6.4 -10.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0787 -6.4 -7.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1088 -6.4 -10.6 Argininosuccinate synthase compare
PP_4680 -6.3 -18.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5155 -6.3 -8.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5289 -6.3 -6.1 Acetylglutamate kinase compare
PP_0420 -6.2 -16.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4678 -6.2 -18.7 Ketol-acid reductoisomerase compare
PP_0967 -6.0 -14.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0597 -6.0 -19.8 methylmalonate-semialdehyde dehydrogenase compare
PP_0966 -6.0 -15.9 Histidinol dehydrogenase compare
PP_0417 -5.9 -22.8 Anthranilate synthase component 1 compare
PP_1986 -5.9 -5.8 3-isopropylmalate dehydratase small subunit compare
PP_1988 -5.8 -12.4 3-isopropylmalate dehydrogenase compare
PP_3511 -5.7 -12.2 Branched-chain-amino-acid aminotransferase compare
PP_5347 -5.7 -15.1 pyruvate carboxylase subunit A compare
PP_1079 -5.6 -10.1 Ornithine carbamoyltransferase compare
PP_5076 -5.6 -24.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_4679 -5.6 -10.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4723 -5.6 -17.1 Carbamoyl-phosphate synthase large chain compare
PP_4890 -5.3 -8.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_5048 -5.3 -8.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0289 -5.3 -9.3 Imidazoleglycerol-phosphate dehydratase compare
PP_5075 -5.3 -19.2 glutamate synthase (NADPH) beta subunit compare
PP_5346 -5.3 -12.7 pyruvate carboxylase subunit B compare
PP_5098 -5.2 -12.6 methionine biosynthesis protein MetW compare
PP_0965 -5.1 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0083 -5.1 -10.3 tryptophan synthase beta chain compare
PP_0184 -5.0 -9.1 Argininosuccinate lyase compare
PP_5185 -5.0 -9.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5270 -4.9 -9.9 D-amino-acid:quinone oxidoreductase (deaminating) conserved
PP_5047 -4.9 -11.7 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5015 -4.8 -7.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0421 -4.7 -9.8 Anthranilate phosphoribosyltransferase compare
PP_2371 -4.7 -10.3 Sulphite reductase hemoprotein, beta subunit compare
PP_1589 -4.7 -12.3 uridylyltransferase compare
PP_0691 -4.6 -5.5 Glutamate 5-kinase compare
PP_5331 -4.5 -5.3 Long-chain acyl-CoA thioester hydrolase compare
PP_5097 -4.3 -17.4 homoserine O-acetyltransferase compare
PP_5128 -4.1 -9.3 Dihydroxy-acid dehydratase compare
PP_5348 -4.0 -13.9 Transcriptional regulator, LysR family compare
PP_2327 -4.0 -11.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2001 -4.0 -13.0 O-succinylhomoserine sulfhydrylase compare
PP_1656 -3.9 -16.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_3999 -3.9 -10.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4700 -3.6 -4.2 pantothenate synthetase compare
PP_5095 -3.6 -2.4 pyrroline-5-carboxylate reductase compare
PP_0214 -3.6 -9.9 4-aminobutyrate aminotransferase compare
PP_5145 -3.5 -24.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2328 -3.4 -8.5 Phosphoadenosine phosphosulfate reductase compare
PP_1912 -3.3 -8.0 Phosphate acyltransferase compare
PP_1215 -3.3 -3.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_1022 -3.2 -7.3 glucose 6-phosphate-1-dehydrogenase compare
PP_1025 -3.2 -9.5 2-isopropylmalate synthase compare
PP_2370 -3.0 -2.9 conserved protein of unknown function compare
PP_2168 -2.9 -13.0 Transaldolase compare
PP_4364 -2.9 -6.8 putative Anti-sigma F factor antagonist compare
PP_5217 -2.9 -19.8 Polyphosphate kinase compare
PP_4999 -2.8 -2.7 dihydroorotase-like protein compare
PP_0127 -2.8 -6.0 Thiol:disulfide interchange protein compare
PP_5303 -2.6 -8.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0948 -2.6 -4.4 Phosphocarrier protein HPr compare
PP_5350 -2.6 -6.7 Transcriptional regulator, RpiR family compare
PP_0362 -2.5 -13.1 Biotin synthase compare
PP_2378 -2.4 -3.2 Fe/S biogenesis protein NfuA compare
PP_0833 -2.4 -3.8 queuine tRNA-ribosyltransferase compare
PP_2088 -2.3 -5.9 RNA polymerase sigma factor SigX compare
PP_0213 -2.2 -8.2 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_0291 -2.2 -2.1 conserved protein of unknown function compare
PP_1217 -2.2 -6.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1110 -2.2 -4.5 serine acetyltransferase compare
PP_4943 -2.2 -2.7 putative Glycosyl transferase compare
PP_1216 -2.1 -3.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3436 -2.1 -9.0 chloramphenicol-sensitive protein compare
PP_4984 -2.1 -14.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0363 -2.1 -14.1 8-amino-7-oxononanoate synthase compare
PP_0339 -2.1 -5.6 Pyruvate dehydrogenase E1 component compare
PP_4895 -2.0 -4.0 tRNA dimethylallyltransferase compare
PP_4693 -2.0 -6.2 RNA polymerase-binding transcription factor DksA compare
PP_1655 -2.0 -5.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4696 -2.0 -6.6 Nitrogen regulation protein NR(I) compare
PP_3505 -2.0 -4.4 conserved protein of unknown function compare
PP_0164 -1.9 -6.9 conserved protein of unknown function compare
PP_2390 -1.9 -10.5 Transcriptional regulator, LysR family compare
PP_4099 -1.9 -13.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0401 -1.9 -2.5 Ribosomal RNA small subunit methyltransferase A compare
PP_0364 -1.8 -10.8 pimeloyl-[acp] methyl ester esterase compare
PP_5114 -1.8 -1.5 putative adenine methyltransferase compare
PP_2908 -1.8 -6.7 DNA-binding transcriptional repressor compare
PP_0809 -1.8 -10.8 disulfide bond formation protein B compare
PP_1109 -1.8 -12.4 Transcriptional regulator, GntR family compare
PP_1734 -1.8 -2.6 Probable septum site-determining protein MinC compare
PP_0365 -1.7 -9.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3484 -1.7 -6.2 Response regulator receiver protein compare
PP_1650 -1.7 -12.5 Sensor protein GacS compare
PP_4477 -1.6 -8.6 N-succinylarginine dihydrolase compare
PP_0366 -1.6 -8.2 dethiobiotin synthetase compare
PP_2388 -1.6 -4.2 Transporter, LysE family compare
PP_1233 -1.6 -6.4 sulfurtransferase compare
PP_5104 -1.6 -8.5 thiazole synthase compare
PP_4227 -1.6 -3.0 conserved protein of unknown function compare
PP_1468 -1.6 -3.2 Tyrosine recombinase XerD compare
PP_0735 -1.6 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_1142 -1.6 -2.1 conserved protein of unknown function compare
PP_4964 -1.5 -3.1 D-erythrose 4-phosphate dehydrogenase compare
PP_0261 -1.5 -8.2 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4532 -1.5 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_3790 -1.5 -9.8 diaminopimelate epimerase compare
PP_4480 -1.4 -9.4 arginine N-succinyltransferase, subunit alpha compare
PP_1111 -1.4 -8.5 putative Synthetase compare
PP_4782 -1.4 -7.0 Phosphomethylpyrimidine kinase compare
PP_5486 -1.4 -3.0 conserved protein of unknown function compare
PP_3506 -1.4 -5.3 Magnesium chelatase, subunit ChII compare
PP_0413 -1.4 -10.2 Polyamine ABC transporter, permease protein compare
PP_1733 -1.3 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_5271 -1.3 -3.4 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_0001 -1.3 -1.8 probable chromosome-partitioning protein compare
PP_4922 -1.3 -9.8 Phosphomethylpyrimidine synthase compare
PP_4832 -1.3 -3.9 Precorrin-6x reductase compare
PP_1426 -1.3 -10.1 L-aspartate oxidase compare
PP_5216 -1.3 -2.2 exopolyphosphatase compare
PP_0832 -1.3 -4.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2414 -1.3 -1.4 conserved exported protein of unknown function compare
PP_0412 -1.3 -8.0 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_4828 -1.3 -2.1 Precorrin-8X methylmutase compare
PP_1672 -1.3 -4.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0411 -1.3 -6.4 Polyamine ABC transporter, ATP-binding protein compare
PP_1362 -1.2 -4.1 pyruvate kinase II compare
PP_4900 -1.2 -7.1 epoxyqueuosine reductase compare
PP_4829 -1.2 -2.6 putative precorrin-3B synthase compare
PP_0414 -1.2 -5.3 Polyamine ABC transporter, permease protein compare
PP_5322 -1.2 -5.2 putative metal ion transporter compare
PP_4058 -1.2 -7.5 1,4-alpha-glucan branching enzyme compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1348 -1.2 -4.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5090 -1.2 -2.3 putative cell division protein compare
PP_2429 -1.1 -2.6 putative Membrane protein compare
PP_2322 -1.1 -4.7 Major outer membrane lipoprotein compare
PP_5233 -1.1 -6.1 ammonium transporter AmtB compare
PP_5230 -1.1 -3.4 Tyrosine recombinase XerC compare
PP_4803 -1.1 -6.2 D-alanyl-D-alanine carboxypeptidase compare
PP_1681 -1.1 -8.0 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1673 -1.1 -3.7 cobyrinate a,c-diamide synthase compare
PP_1675 -1.1 -6.8 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1770 -1.1 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1128 -1.1 -2.2 OmpA family protein compare
PP_0393 -1.0 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3417 -1.0 -5.0 D-gluconate transporter compare
PP_1268 -1.0 -4.2 putative HtrA suppressor protein sohA compare
PP_3507 -1.0 -7.4 Aerobic cobaltochelatase subunit CobN compare
PP_4826 -1.0 -5.4 Precorrin-3B C17-methyltransferase compare
PP_3508 -1.0 -2.7 Protein CobW compare
PP_0409 -1.0 -7.5 Sensory box histidine kinase compare
PP_4827 -1.0 -6.8 Precorrin-2 C(20)-methyltransferase compare
PP_1654 -1.0 -3.0 cysteine synthase B compare
PP_4874 -1.0 -1.2 50S ribosomal protein L9 compare
PP_0846 -1.0 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_5177 -1.0 -6.8 spermidine/putrescine ABC transporter - permease subunit compare
PP_4896 -1.0 -5.7 DNA mismatch repair protein MutL compare
PP_3105 -1.0 -3.3 conserved membrane protein of unknown function compare
PP_4897 -1.0 -3.0 N-acetylmuramoyl-L-alanine amidase compare
PP_0410 -1.0 -5.9 DNA-binding response regulator UhpA compare
PP_4124 -1.0 -3.9 NADH-quinone oxidoreductase subunit G compare
PP_1677 -1.0 -4.5 Adenosyl-cobyric acid synthase compare
PP_4792 -0.9 -1.9 conserved exported protein of unknown function compare
PP_3519 -0.9 -1.4 putative Lipoprotein compare
PP_4004 -0.9 -2.5 DNA translocase FtsK compare
PP_2932 -0.9 -6.2 Amidase family protein compare
PP_3649 -0.9 -2.6 Transcriptional regulator, GntR family compare
PP_3821 -0.9 -5.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5328 -0.9 -2.3 putative phosphate transport system permease protein compare
PP_1664 -0.9 -3.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_0241 -0.9 -3.6 Transporter compare
PP_0002 -0.9 -4.9 probable chromosome partition protein compare
PP_2375 -0.9 -7.2 cobalamin-dependent methionine synthase compare
PP_2929 -0.9 -5.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1679 -0.9 -3.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4789 -0.9 -2.9 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1676 -0.9 -3.3 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5178 -0.9 -6.9 spermidine/putrescine ABC transporter - inner membrane subunit compare
PP_4632 -0.9 -4.7 dihydrofolate reductase / dihydromonapterin reductase compare
PP_1493 -0.9 -2.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5283 -0.9 -5.0 periplasmic dipeptide transport protein compare
PP_4942 -0.9 -1.8 conserved protein of unknown function compare
PP_1075 -0.8 -6.5 glycerol kinase compare
PP_4130 -0.8 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4121 -0.8 -3.2 NADH-quinone oxidoreductase subunit C/D compare
PP_4120 -0.8 -2.9 NADH-quinone oxidoreductase subunit B compare


Specific Phenotypes

For 13 genes in this experiment

For nitrogen source Beta-alanine in Pseudomonas putida KT2440

For nitrogen source Beta-alanine across organisms