Experiment set27IT041 for Pseudomonas putida KT2440

Compare to:

Beta-alanine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PP_2330 +1.6 8.9 conserved protein of unknown function compare
PP_2331 +1.6 10.8 conserved membrane protein of unknown function compare
PP_0937 +1.4 8.0 endoribonuclease G (RNAse G) compare
PP_4892 +1.4 8.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2132 +1.3 4.0 Universal stress protein compare
PP_4891 +1.3 7.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1059 +1.2 10.0 Uncharacterized amino acid permease YtnA compare
PP_2332 +1.1 5.8 conserved exported protein of unknown function compare
PP_4840 +1.1 7.9 D-alanine, beta-alanine, D-serine, glycine permease compare
PP_4482 +0.9 4.6 Transcriptional regulator, AraC family compare
PP_0719 +0.9 1.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1826 +0.9 4.8 Hydrolase, isochorismatase family compare
PP_4373 +0.9 7.5 Transcriptional regulator FleQ compare
PP_1778 +0.9 5.8 Lipopolysaccharide ABC export system, permease protein compare
PP_0880 +0.8 3.7 dipeptide ABC transporter - putative membrane subunit compare
PP_4390 +0.8 6.5 flagellar basal-body rod protein FlgC compare
PP_4268 +0.8 2.3 nucleoid-associated broad specificity regulator compare
PP_4989 +0.8 2.9 Protein PilJ compare
PP_1410 +0.8 2.0 conserved protein of unknown function compare
PP_5533 +0.8 2.0 conserved protein of unknown function compare
PP_0368 +0.8 5.8 putative Acyl-CoA dehydrogenase compare
PP_0879 +0.8 4.9 dipeptide ABC transporter - putative ATP binding subunit compare
PP_1562 +0.7 2.9 putative Phage terminase, small subunit compare
PP_1138 +0.7 3.6 branched chain amino acid transporter - ATP binding subunit compare
PP_1568 +0.7 1.6 conserved protein of unknown function compare
PP_5268 +0.7 5.5 DNA-binding transcriptional repressor PuuR-putrescine compare
PP_3460 +0.7 3.1 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_2387 +0.7 1.7 conserved protein of unknown function compare
PP_2543 +0.7 5.6 gamma-aminobutyrate permease compare
PP_4355 +0.7 2.9 flagellar export apparatus subunit compare
PP_4352 +0.7 5.8 flagellin export apparatus, substrate specificity protein compare
PP_1074 +0.7 2.6 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_0236 +0.7 2.1 NAD(P)H-dependent FMN reductase subunit compare
PP_2299 +0.6 3.2 Trigger factor compare
PP_4695 +0.6 5.0 Sensory box histidine kinase compare
PP_0878 +0.6 4.2 dipeptide ABC transporter, binding subunit compare
PP_0035 +0.6 2.8 putative bactoprenol-linked glycose transferase compare
PP_4365 +0.6 3.4 Flagellar protein FliJ compare
PP_1779 +0.6 3.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2497 +0.6 1.3 conserved protein of unknown function compare
PP_4343 +0.6 3.3 Flagellar biosynthesis protein FlhF compare
PP_t49 +0.6 3.4 tRNA-Met compare
PP_5597 +0.6 2.6 conserved protein of unknown function compare
PP_5295 +0.6 2.0 conserved protein of unknown function compare
PP_1140 +0.6 5.3 branched chain amino acid transporter - permease subunit compare
PP_2232 +0.6 2.9 XRE family transcriptional regulator compare
PP_4391 +0.6 4.2 flagellar basal-body rod protein FlgB compare
PP_1834 +0.6 2.9 conserved protein of unknown function compare
PP_2442 +0.6 1.6 conserved protein of unknown function, DUF480 family compare
PP_5748 +0.6 1.6 cytochrome c heme lyase subunit compare
PP_0881 +0.6 3.1 dipeptide ABC transporter - putative membrane subunit compare
PP_0962 +0.6 2.6 toluene-tolerance protein compare
PP_5441 +0.6 2.2 protein of unknown function compare
PP_4353 +0.6 3.9 Flagellar biosynthetic protein fliR compare
PP_3365 +0.6 1.5 Acetolactate synthase compare
PP_2898 +0.6 2.2 conserved exported protein of unknown function compare
PP_5337 +0.6 2.9 LysR family transcriptional regulator compare
PP_3808 +0.6 1.6 Antibiotic synthesis protein MbtH compare
PP_2510 +0.6 1.7 conserved protein of unknown function compare
PP_4354 +0.6 3.3 flagellar export apparatus subunit compare
PP_1860 +0.5 2.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_1695 +0.5 4.4 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_1825 +0.5 2.5 conserved exported protein of unknown function compare
PP_4356 +0.5 2.6 Flagellar protein FliO compare
PP_3447 +0.5 1.4 conserved membrane protein of unknown function compare
PP_1214 +0.5 1.6 putative transcriptional regulatory protein compare
PP_4384 +0.5 3.9 Flagellar L-ring protein compare
PP_1141 +0.5 3.9 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_5508 +0.5 1.2 conserved protein of unknown function compare
PP_1692 +0.5 2.8 conserved protein of unknown function compare
PP_0276 +0.5 1.2 Transcriptional regulator, Cro/CI family compare
PP_0959 +0.5 1.7 phospholipid ABC transporter compare
PP_4697 +0.5 2.0 poly(A) polymerase compare
PP_5248 +0.5 1.5 putative hydrolase compare
PP_1503 +0.5 1.4 conserved protein of unknown function compare
PP_0194 +0.5 3.3 Transcriptional regulatory protein AlgP compare
PP_4974 +0.5 2.5 NhaP-type Na+/H+ and K+/H+ antiporters compare
PP_4367 +0.5 2.1 Flagellar assembly protein FliH compare
PP_1381 +0.5 1.3 4-carboxymuconolactone decarboxylase compare
PP_0198 +0.5 2.2 putative transporter compare
PP_0627 +0.5 1.2 conserved protein of unknown function compare
PP_5719 +0.5 3.4 choline-responsive transcriptional repressor BetI compare
PP_4223 +0.5 1.8 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4349 +0.5 3.3 conserved protein of unknown function compare
PP_0383 +0.5 3.6 Lysine 2-monooxygenase compare
PP_4200 +0.5 3.1 conserved exported protein of unknown function compare
PP_3640 +0.5 1.5 Transcriptional regulator, AraC family compare
PP_5229 +0.5 1.8 conserved protein of unknown function compare
PP_4734 +0.5 3.1 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_4382 +0.5 3.8 Peptidoglycan hydrolase FlgJ compare
PP_5008 +0.5 1.2 Poly granule-associated protein compare
PP_1087 +0.5 3.0 Outer membrane protein, OmpA family compare
PP_4396 +0.5 2.8 conserved protein of unknown function compare
PP_4389 +0.5 3.6 Flagellar basal-body rod modification protein FlgD compare
PP_5491 +0.5 2.2 conserved protein of unknown function with SEC-C motif domain compare
PP_0274 +0.4 0.3 putative transcriptional regulator containing HTH domain compare
PP_1164 +0.4 1.5 Transcriptional regulator, LysR family compare
PP_1635 +0.4 1.6 DNA-binding response regulator compare
PP_2511 +0.4 2.3 conserved protein of unknown function compare
PP_0048 +0.4 1.1 conserved protein of unknown function compare
PP_3118 +0.4 2.1 DNA linked enzyme involved in DNA repair compare
PP_0976 +0.4 2.7 Ribosomal RNA large subunit methyltransferase F compare
PP_4331 +0.4 2.6 conserved protein of unknown function compare
PP_1176 +0.4 0.8 conserved protein of unknown function compare
PP_2217 +0.4 1.7 enoyl-CoA hydratase compare
PP_4341 +0.4 3.4 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0385 +0.4 2.4 putative serine acetyltransferase compare
PP_0973 +0.4 2.7 Nucleoid-associated protein PP_0973 compare
PP_2764 +0.4 1.2 FMN reductase (NADPH) compare
PP_3366 +0.4 2.9 Transcriptional regulator, LysR family compare
PP_1255 +0.4 2.5 putative cis-4-hydroxy-D-proline oxidase compare
PP_2023 +0.4 2.6 Glutathione S-transferase family protein compare
PP_0893 +0.4 1.8 ThiJ/PfpI family protein compare
PP_4383 +0.4 2.5 Flagellar P-ring protein compare
PP_0168 +0.4 3.9 putative surface adhesion protein compare
PP_0306 +0.4 1.5 conserved protein of unknown function compare
PP_4933 +0.4 3.1 conserved protein of unknown function compare
PP_2304 +0.4 3.2 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_1082 +0.4 2.2 bacterioferritin compare
PP_3884 +0.4 2.3 Phage holin, lambda family compare
PP_4388 +0.4 3.4 Flagellar hook protein FlgE compare
PP_3143 +0.4 2.3 Transcriptional regulator, LysR family compare
PP_4361 +0.4 2.7 Flagellar hook-length control protein FliK compare
PP_5054 +0.4 0.9 glutaredoxin 3 compare
PP_4370 +0.4 2.0 Flagellar hook-basal body complex protein FliE compare
PP_4301 +0.4 1.7 Pyruvate kinase compare
PP_4109 +0.4 1.0 conserved protein of unknown function compare
PP_4156 +0.4 1.8 Transcriptional regulator, LysR family compare
PP_5500 +0.4 1.7 protein of unknown function compare
PP_0167 +0.4 3.5 Toxin secretion ATP-binding protein compare
PP_1099 +0.4 1.3 Cold shock protein CapB compare
PP_5317 +0.4 1.9 Probable chorismate pyruvate-lyase compare
PP_0801 +0.4 0.8 conserved exported protein of unknown function compare
PP_0850 +0.4 2.3 Dual-specificity RNA methyltransferase RlmN compare
PP_0166 +0.4 3.2 HlyD family secretion protein compare
PP_0677 +0.4 1.3 putative Lipoprotein compare
PP_2449 +0.4 2.5 conserved protein of unknown function compare
PP_4378 +0.4 3.4 flagellin, filament structural protein compare
PP_1392 +0.4 2.4 putative NAD-binding protein compare
PP_4381 +0.4 3.3 Flagellar hook-associated protein FlgK compare
PP_4564 +0.4 1.6 putative Lipoprotein compare
PP_4376 +0.4 3.2 flagellar filament capping protein compare
PP_0502 +0.4 1.8 conserved protein of unknown function compare
PP_2777 +0.4 2.1 putative Acyl carrier protein compare
PP_3876 +0.4 1.5 conserved protein of unknown function compare
PP_2306 +0.4 1.2 conserved exported protein of unknown function compare
PP_0508 +0.4 1.5 conserved exported protein of unknown function compare
PP_0333 +0.4 2.5 conserved exported protein of unknown function compare
PP_4838 +0.4 3.3 Outer membrane copper receptor OprC compare
PP_4045 +0.4 0.8 conserved protein of unknown function compare
PP_3198 +0.4 1.0 Ferredoxin, 2Fe-2S compare
PP_0025 +0.4 0.8 hypothetical protein compare
PP_5654 +0.4 1.3 putative phosphotriesterase compare
PP_1777 +0.4 3.2 phosphomannomutase compare
PP_1792 +0.4 3.5 Glycosyl transferase, group 2 family protein compare
PP_4344 +0.4 3.0 flagellar export pore protein compare
PP_2747 +0.4 1.3 conserved protein of unknown function compare
PP_4859 +0.4 2.2 Transcriptional regulator, TetR family compare
PP_4266 +0.4 2.2 Adenine phosphoribosyltransferase compare
PP_1307 +0.4 1.8 AsnC family transcriptional regulator compare
PP_4296 +0.4 1.2 conserved exported protein of unknown function compare
PP_4569 +0.4 1.3 conserved protein of unknown function compare
PP_4504 +0.4 1.3 conserved exported protein of unknown function compare
PP_0755 +0.4 1.9 conserved protein of unknown function compare
PP_1528 +0.4 1.0 conserved protein of unknown function compare
PP_1799 +0.4 2.9 GDP-mannose 4,6-dehydratase compare
PP_4994 +0.4 2.0 conserved protein of unknown function compare
PP_4366 +0.4 3.0 flagellum-specific ATP synthase compare
PP_5201 +0.4 0.8 conserved protein of unknown function, UPF0149 family compare
PP_5496 +0.4 1.3 conserved exported protein of unknown function compare
PP_1630 +0.4 2.2 Regulatory protein RecX compare
PP_4273 +0.4 0.6 Transcriptional regulator, MerR family compare
PP_0509 +0.4 1.6 conserved protein of unknown function compare
PP_1702 +0.4 1.4 Recombination-associated protein RdgC compare
PP_2976 +0.3 0.7 putative transposase compare
PP_1269 +0.3 0.7 Universal stress protein family compare
PP_4793 +0.3 1.3 conserved protein of unknown function compare
PP_3013 +0.3 2.2 conserved protein of unknown function compare
PP_t13 +0.3 1.1 tRNA-Lys compare
PP_3280 +0.3 2.0 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_5273 +0.3 2.9 putative Oxidoreductase compare
PP_5284 +0.3 2.5 UPF0758 protein PP_5284 compare
PP_1788 +0.3 1.4 conserved protein of unknown function compare
PP_4662 +0.3 1.8 conserved protein of unknown function compare
PP_2793 +0.3 1.5 Acyl-CoA dehydrogenase family protein compare
PP_2903 +0.3 1.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4762 +0.3 2.0 Acyl-CoA thioesterase II compare
PP_5198 +0.3 1.1 conserved protein of unknown function compare
PP_0321 +0.3 2.4 low specificity L-threonine aldolase compare
PP_1748 +0.3 1.7 conserved protein of unknown function compare
PP_2290 +0.3 1.5 conserved protein of unknown function compare
PP_1126 +0.3 3.0 putative Hydrolase compare
PP_2999 +0.3 0.9 Glyoxalase family protein compare
PP_1317 +0.3 2.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5274 +0.3 0.7 conserved protein of unknown function compare
PP_1139 +0.3 2.7 branched chain amino acid transporter - permease subunit compare
PP_5100 +0.3 1.3 dITP/XTP pyrophosphatase compare
PP_t10 +0.3 0.7 tRNA-Pro compare
PP_5279 +0.3 1.3 conserved protein of unknown function compare
PP_1646 +0.3 2.3 putative Thioredoxin compare


Specific Phenotypes

For 13 genes in this experiment

For nitrogen source Beta-alanine in Pseudomonas putida KT2440

For nitrogen source Beta-alanine across organisms