Experiment set27IT039 for Pseudomonas putida KT2440

Compare to:

L-Aspartate nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0082 -6.5 -6.3 tryptophan synthase alpha chain compare
PP_4364 -6.4 -7.9 putative Anti-sigma F factor antagonist compare
PP_0083 -5.4 -9.1 tryptophan synthase beta chain compare
PP_0417 -4.5 -20.9 Anthranilate synthase component 1 compare
PP_5185 -4.4 -9.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1079 -4.4 -9.3 Ornithine carbamoyltransferase compare
PP_5014 -4.3 -6.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0290 -4.1 -11.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0420 -4.1 -13.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4909 -4.1 -12.0 phosphoserine phosphatase compare
PP_4723 -4.1 -18.5 Carbamoyl-phosphate synthase large chain compare
PP_4678 -4.0 -18.6 Ketol-acid reductoisomerase compare
PP_4700 -4.0 -3.9 pantothenate synthetase compare
PP_1985 -4.0 -8.2 3-isopropylmalate dehydratase large subunit compare
PP_1995 -4.0 -11.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2371 -3.9 -10.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4890 -3.9 -7.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_3511 -3.9 -13.0 Branched-chain-amino-acid aminotransferase compare
PP_0965 -3.9 -12.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1986 -3.8 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_1988 -3.8 -11.8 3-isopropylmalate dehydrogenase compare
PP_4680 -3.8 -19.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -3.7 -13.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4999 -3.7 -2.5 dihydroorotase-like protein compare
PP_4724 -3.7 -8.5 Carbamoyl-phosphate synthase small chain compare
PP_5095 -3.7 -2.5 pyrroline-5-carboxylate reductase compare
PP_0339 -3.7 -4.3 Pyruvate dehydrogenase E1 component compare
PP_0421 -3.6 -8.7 Anthranilate phosphoribosyltransferase compare
PP_4679 -3.6 -11.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5155 -3.6 -6.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0422 -3.6 -6.7 Indole-3-glycerol phosphate synthase compare
PP_0966 -3.4 -15.1 Histidinol dehydrogenase compare
PP_0184 -3.4 -9.5 Argininosuccinate lyase compare
PP_0289 -3.4 -8.3 Imidazoleglycerol-phosphate dehydratase compare
PP_1231 -3.4 -8.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0293 -3.3 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1088 -3.2 -13.9 Argininosuccinate synthase compare
PP_5128 -3.2 -10.2 Dihydroxy-acid dehydratase compare
PP_3999 -3.1 -10.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5015 -3.1 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0787 -3.0 -4.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2328 -3.0 -9.3 Phosphoadenosine phosphosulfate reductase compare
PP_0292 -2.9 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1025 -2.9 -12.7 2-isopropylmalate synthase compare
PP_0691 -2.9 -6.1 Glutamate 5-kinase compare
PP_5048 -2.8 -7.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5097 -2.8 -15.1 homoserine O-acetyltransferase compare
PP_0164 -2.7 -9.6 conserved protein of unknown function compare
PP_5098 -2.6 -10.6 methionine biosynthesis protein MetW compare
PP_5289 -2.6 -4.0 Acetylglutamate kinase compare
PP_2001 -2.5 -12.3 O-succinylhomoserine sulfhydrylase compare
PP_4943 -2.4 -3.6 putative Glycosyl transferase compare
PP_2370 -2.3 -3.1 conserved protein of unknown function compare
PP_0291 -2.2 -3.0 conserved protein of unknown function compare
PP_1022 -2.2 -6.7 glucose 6-phosphate-1-dehydrogenase compare
PP_2327 -2.2 -10.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1912 -2.2 -7.1 Phosphate acyltransferase compare
PP_5303 -2.1 -6.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4098 -2.1 -2.7 UvrABC system protein C compare
PP_2378 -1.9 -3.1 Fe/S biogenesis protein NfuA compare
PP_3821 -1.9 -9.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2388 -1.8 -4.6 Transporter, LysE family compare
PP_2414 -1.8 -1.4 conserved exported protein of unknown function compare
PP_4696 -1.8 -6.2 Nitrogen regulation protein NR(I) compare
PP_0914 -1.8 -11.1 GGDEF domain protein compare
PP_5047 -1.7 -7.0 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1664 -1.7 -3.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_4942 -1.6 -3.3 conserved protein of unknown function compare
PP_2390 -1.6 -7.2 Transcriptional regulator, LysR family compare
PP_4699 -1.5 -6.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4940 -1.4 -7.9 Putative glycosyltransferase compare
PP_1110 -1.4 -4.1 serine acetyltransferase compare
PP_0127 -1.4 -5.4 Thiol:disulfide interchange protein compare
PP_1111 -1.4 -6.9 putative Synthetase compare
PP_1362 -1.3 -4.6 pyruvate kinase II compare
PP_1468 -1.3 -3.9 Tyrosine recombinase XerD compare
PP_1589 -1.3 -6.4 uridylyltransferase compare
PP_4799 -1.3 -0.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1493 -1.2 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1109 -1.2 -8.3 Transcriptional regulator, GntR family compare
PP_4124 -1.2 -4.8 NADH-quinone oxidoreductase subunit G compare
PP_1066 -1.2 -4.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_1733 -1.2 -2.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_1217 -1.2 -3.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1366 -1.2 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_2168 -1.1 -7.7 Transaldolase compare
PP_4004 -1.1 -3.3 DNA translocase FtsK compare
PP_3790 -1.1 -7.9 diaminopimelate epimerase compare
PP_5216 -1.1 -2.2 exopolyphosphatase compare
PP_5580 -1.1 -3.0 protein of unknown function compare
PP_2031 -1.1 -3.1 conserved protein of unknown function compare
PP_4122 -1.0 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4829 -1.0 -3.5 putative precorrin-3B synthase compare
PP_5331 -1.0 -3.3 Long-chain acyl-CoA thioester hydrolase compare
PP_1216 -1.0 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0137 -1.0 -7.3 glutamate/aspartate-proton DAACS transporter compare
PP_5350 -1.0 -3.4 Transcriptional regulator, RpiR family compare
PP_3484 -1.0 -2.7 Response regulator receiver protein compare
PP_4964 -1.0 -1.5 D-erythrose 4-phosphate dehydrogenase compare
PP_2302 -1.0 -5.1 DNA-binding, ATP-dependent protease compare
PP_1067 -0.9 -7.4 Sensor histidine kinase compare
PP_5337 -0.9 -3.5 LysR family transcriptional regulator compare
PP_4739 -0.9 -3.0 conserved protein of unknown function compare
PP_1233 -0.9 -4.1 sulfurtransferase compare
PP_4121 -0.9 -4.3 NADH-quinone oxidoreductase subunit C/D compare
PP_0630 -0.9 -1.6 DNA gyrase inhibitor YacG compare
PP_5528 -0.9 -2.6 conserved protein of unknown function compare
PP_4804 -0.9 -2.2 RlpA-like lipoprotein compare
PP_4482 -0.9 -3.2 Transcriptional regulator, AraC family compare
PP_1426 -0.9 -7.3 L-aspartate oxidase compare
PP_1348 -0.9 -5.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4268 -0.8 -2.0 nucleoid-associated broad specificity regulator compare
PP_4828 -0.8 -1.6 Precorrin-8X methylmutase compare
PP_2322 -0.8 -4.4 Major outer membrane lipoprotein compare
PP_0833 -0.8 -1.8 queuine tRNA-ribosyltransferase compare
PP_5104 -0.8 -4.8 thiazole synthase compare
PP_3002 -0.8 -3.1 shikimate dehydrogenase-related enzyme compare
PP_4989 -0.8 -2.5 Protein PilJ compare
PP_4910 -0.8 -2.2 conserved protein of unknown function compare
PP_0393 -0.8 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5227 -0.8 -4.6 diaminopimelate decarboxylase compare
PP_5028 -0.8 -2.6 proline iminopeptidase compare
PP_3508 -0.7 -3.4 Protein CobW compare
PP_4480 -0.7 -5.4 arginine N-succinyltransferase, subunit alpha compare
PP_1672 -0.7 -3.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4358 -0.7 -4.4 flagellar synthesis, switching and energizing component compare
PP_1681 -0.7 -5.3 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4359 -0.7 -5.3 Flagellar protein FliL compare
PP_4880 -0.7 -2.6 exoribonuclease R compare
PP_3590 -0.7 -4.7 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0261 -0.7 -3.7 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_3662 -0.7 -4.2 conserved protein of unknown function compare
PP_4379 -0.7 -4.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_3098 -0.7 -1.3 conserved protein of unknown function compare
PP_4891 -0.7 -3.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4129 -0.7 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4131 -0.6 -3.1 NADH-quinone oxidoreductase subunit N compare
PP_4874 -0.6 -1.0 50S ribosomal protein L9 compare
PP_1071 -0.6 -4.4 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_1128 -0.6 -1.8 OmpA family protein compare
PP_2389 -0.6 -2.2 conserved protein of unknown function compare
PP_1770 -0.6 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1605 -0.6 -2.0 Ribonuclease HII compare
PP_4684 -0.6 -4.1 conserved protein of unknown function with kinase-like domain compare
PP_3248 -0.6 -1.2 Dyp-type peroxidase family protein compare
PP_4481 -0.6 -3.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_4782 -0.6 -3.2 Phosphomethylpyrimidine kinase compare
PP_4363 -0.6 -4.6 Sensor histidine kinase/response regulator compare
PP_4776 -0.6 -4.5 AsnC family transcriptional regulator compare
PP_5267 -0.6 -1.6 putative cytochrome c5 compare
PP_4368 -0.6 -3.6 flagellar motor switch protein compare
PP_3392 -0.6 -2.0 conserved protein of unknown function compare
PP_2152 -0.6 -1.5 glycerophosphoryl diester phosphodiesterase compare
PP_5469 -0.6 -2.6 putative SAM-dependent methyltransferase compare
PP_5035 -0.6 -3.7 Histidine utilization repressor compare
PP_2999 -0.6 -1.4 Glyoxalase family protein compare
PP_1764 -0.6 -3.0 Phosphoglycolate phosphatase 2 compare
PP_1629 -0.6 -2.5 Protein RecA compare
PP_1637 -0.6 -2.3 Transcriptional regulator, LysR family compare
PP_3506 -0.6 -3.0 Magnesium chelatase, subunit ChII compare
PP_4369 -0.6 -4.4 Flagellar M-ring protein compare
PP_2345 -0.6 -1.7 conserved exported protein of unknown function compare
PP_4722 -0.6 -2.2 Transcription elongation factor GreA compare
PP_1761 -0.6 -4.7 diguanylate cyclase with phosphodiesterase domain compare
PP_4895 -0.6 -1.7 tRNA dimethylallyltransferase compare
PP_2060 -0.6 -1.8 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_5144 -0.6 -3.7 conserved protein of unknown function compare
PP_2256 -0.6 -2.9 Transcriptional regulator, Cro/CI family compare
PP_5328 -0.6 -1.6 putative phosphate transport system permease protein compare
PP_4988 -0.6 -2.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0397 -0.6 -4.8 protein kinase compare
PP_4892 -0.6 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4289 -0.5 -4.1 conserved membrane protein of unknown function compare
PP_3241 -0.5 -1.2 conserved exported protein of unknown function compare
PP_1598 -0.5 -2.5 regulatory intramembrane protein RIP zinc protease compare
PP_3467 -0.5 -3.2 Sigma-54 dependent transcriptional regulator compare
PP_2737 -0.5 -1.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2976 -0.5 -1.4 putative transposase compare
PP_3903 -0.5 -1.6 conserved protein of unknown function compare
PP_0002 -0.5 -3.1 probable chromosome partition protein compare
PP_3398 -0.5 -1.5 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4120 -0.5 -2.1 NADH-quinone oxidoreductase subunit B compare
PP_3789 -0.5 -3.1 putative Efflux transporter compare
PP_2402 -0.5 -1.3 putative Sensor histidine kinase compare
PP_4922 -0.5 -4.0 Phosphomethylpyrimidine synthase compare
PP_0396 -0.5 -4.4 conserved protein of unknown function compare
PP_2137 -0.5 -1.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_3892 -0.5 -1.4 conserved protein of unknown function compare
PP_1096 -0.5 -2.0 putative electron transport complex protein compare
PP_2027 -0.5 -2.6 conserved exported protein of unknown function compare
PP_2324 -0.5 -3.1 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1303 -0.5 -3.3 Sulfate adenylyltransferase subunit 2 compare
PP_1304 -0.5 -3.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5628 -0.5 -1.7 conserved protein of unknown function compare
PP_3758 -0.5 -2.9 Response regulator/sensor histidine kinase compare
PP_0381 -0.5 -3.0 Coenzyme PQQ synthesis protein F compare
PP_5600 -0.5 -1.7 conserved protein of unknown function compare
PP_3481 -0.5 -1.7 conserved exported protein of unknown function compare
PP_5310 -0.5 -1.7 junction-specific ATP-dependent DNA helicase compare
PP_4340 -0.5 -2.1 response regulator for chemotactic signal transduction compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source L-Aspartate across organisms