Experiment set27IT035 for Pseudomonas putida KT2440

Compare to:

D-Alanine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4724 -7.1 -4.9 Carbamoyl-phosphate synthase small chain compare
PP_4909 -6.6 -7.8 phosphoserine phosphatase compare
PP_5076 -6.2 -23.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_5075 -6.1 -15.4 glutamate synthase (NADPH) beta subunit compare
PP_0290 -6.1 -10.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1985 -6.0 -7.1 3-isopropylmalate dehydratase large subunit compare
PP_4678 -5.9 -18.5 Ketol-acid reductoisomerase compare
PP_0422 -5.7 -8.7 Indole-3-glycerol phosphate synthase compare
PP_4680 -5.7 -18.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5048 -5.6 -7.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1988 -5.6 -12.5 3-isopropylmalate dehydrogenase compare
PP_0083 -5.5 -8.4 tryptophan synthase beta chain compare
PP_4723 -5.5 -16.2 Carbamoyl-phosphate synthase large chain compare
PP_4679 -5.5 -9.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -5.4 -13.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0082 -5.4 -9.0 tryptophan synthase alpha chain compare
PP_1088 -5.2 -14.2 Argininosuccinate synthase compare
PP_0293 -5.1 -4.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5289 -5.0 -6.9 Acetylglutamate kinase compare
PP_5185 -5.0 -8.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0966 -5.0 -15.5 Histidinol dehydrogenase compare
PP_2371 -5.0 -9.5 Sulphite reductase hemoprotein, beta subunit compare
PP_1079 -4.9 -9.2 Ornithine carbamoyltransferase compare
PP_0420 -4.9 -13.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0184 -4.8 -8.7 Argininosuccinate lyase compare
PP_3511 -4.8 -13.1 Branched-chain-amino-acid aminotransferase compare
PP_2370 -4.8 -5.7 conserved protein of unknown function compare
PP_5015 -4.7 -6.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1986 -4.7 -5.6 3-isopropylmalate dehydratase small subunit compare
PP_0289 -4.7 -8.4 Imidazoleglycerol-phosphate dehydratase compare
PP_1995 -4.7 -11.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5155 -4.5 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5047 -4.5 -7.7 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0417 -4.4 -21.0 Anthranilate synthase component 1 compare
PP_5014 -4.4 -6.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_5098 -4.4 -10.6 methionine biosynthesis protein MetW compare
PP_5097 -4.3 -17.2 homoserine O-acetyltransferase compare
PP_2001 -4.2 -12.2 O-succinylhomoserine sulfhydrylase compare
PP_5346 -4.2 -10.6 pyruvate carboxylase subunit B compare
PP_5128 -4.2 -8.6 Dihydroxy-acid dehydratase compare
PP_5347 -4.2 -15.6 pyruvate carboxylase subunit A compare
PP_0965 -4.1 -12.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3999 -4.0 -9.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1025 -3.9 -12.1 2-isopropylmalate synthase compare
PP_1231 -3.9 -9.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2327 -3.8 -11.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0691 -3.7 -6.2 Glutamate 5-kinase compare
PP_2328 -3.7 -8.6 Phosphoadenosine phosphosulfate reductase compare
PP_4890 -3.7 -8.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0292 -3.6 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1589 -3.6 -12.8 uridylyltransferase compare
PP_0421 -3.6 -9.6 Anthranilate phosphoribosyltransferase compare
PP_0339 -3.5 -3.4 Pyruvate dehydrogenase E1 component compare
PP_4999 -3.4 -2.3 dihydroorotase-like protein compare
PP_5095 -3.4 -2.3 pyrroline-5-carboxylate reductase compare
PP_0787 -3.4 -6.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2088 -3.4 -8.3 RNA polymerase sigma factor SigX compare
PP_5303 -3.1 -6.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5348 -3.0 -9.9 Transcriptional regulator, LysR family compare
PP_1224 -2.9 -7.8 periplasmic subunit of the TolQRA transport system compare
PP_4700 -2.6 -4.5 pantothenate synthetase compare
PP_4004 -2.5 -5.3 DNA translocase FtsK compare
PP_4696 -2.4 -6.0 Nitrogen regulation protein NR(I) compare
PP_1022 -2.4 -7.2 glucose 6-phosphate-1-dehydrogenase compare
PP_0291 -2.1 -2.7 conserved protein of unknown function compare
PP_5271 -2.1 -4.9 DNA-binding transcriptional dual regulator, leucine-binding conserved
PP_0362 -2.0 -12.4 Biotin synthase compare
PP_1994 -1.9 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_1654 -1.8 -4.0 cysteine synthase B compare
PP_4122 -1.7 -2.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1912 -1.6 -7.0 Phosphate acyltransferase compare
PP_1217 -1.6 -4.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5104 -1.6 -8.0 thiazole synthase compare
PP_1468 -1.6 -4.0 Tyrosine recombinase XerD compare
PP_2378 -1.6 -2.7 Fe/S biogenesis protein NfuA compare
PP_5028 -1.5 -4.3 proline iminopeptidase compare
PP_3790 -1.5 -8.5 diaminopimelate epimerase compare
PP_1664 -1.4 -4.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_2168 -1.4 -9.9 Transaldolase compare
PP_1216 -1.4 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4964 -1.4 -2.9 D-erythrose 4-phosphate dehydrogenase compare
PP_1734 -1.4 -2.4 Probable septum site-determining protein MinC compare
PP_4480 -1.3 -9.0 arginine N-succinyltransferase, subunit alpha compare
PP_0435 -1.3 -10.4 Peptidase, M23/M37 family compare
PP_4098 -1.3 -1.9 UvrABC system protein C compare
PP_5324 -1.3 -3.7 Response regulator compare
PP_0363 -1.2 -9.1 8-amino-7-oxononanoate synthase compare
PP_4984 -1.2 -8.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4782 -1.2 -3.7 Phosphomethylpyrimidine kinase compare
PP_4910 -1.2 -2.8 conserved protein of unknown function compare
PP_0365 -1.2 -8.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1326 -1.1 -2.8 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0364 -1.1 -6.3 pimeloyl-[acp] methyl ester esterase compare
PP_4136 -1.1 -1.4 Transcriptional regulator, LuxR family compare
PP_2388 -1.1 -2.8 Transporter, LysE family compare
PP_0393 -1.1 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4799 -1.1 -0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5717 -1.1 -2.2 conserved protein of unknown function compare
PP_1348 -1.1 -5.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1128 -1.1 -2.7 OmpA family protein compare
PP_1733 -1.1 -1.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_0801 -1.0 -1.6 conserved exported protein of unknown function compare
PP_2390 -1.0 -5.7 Transcriptional regulator, LysR family compare
PP_1233 -1.0 -4.4 sulfurtransferase compare
PP_4922 -1.0 -7.7 Phosphomethylpyrimidine synthase compare
PP_0366 -1.0 -5.8 dethiobiotin synthetase compare
PP_0719 -1.0 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4693 -1.0 -4.4 RNA polymerase-binding transcription factor DksA compare
PP_4121 -1.0 -4.2 NADH-quinone oxidoreductase subunit C/D compare
PP_4942 -1.0 -2.0 conserved protein of unknown function compare
PP_4699 -1.0 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4695 -1.0 -6.8 Sensory box histidine kinase compare
PP_5350 -0.9 -3.7 Transcriptional regulator, RpiR family compare
PP_4058 -0.9 -6.9 1,4-alpha-glucan branching enzyme compare
PP_5227 -0.9 -5.2 diaminopimelate decarboxylase compare
PP_4364 -0.9 -3.8 putative Anti-sigma F factor antagonist compare
PP_0401 -0.9 -1.3 Ribosomal RNA small subunit methyltransferase A compare
PP_0630 -0.9 -1.5 DNA gyrase inhibitor YacG compare
PP_1110 -0.9 -4.1 serine acetyltransferase compare
PP_4722 -0.9 -3.0 Transcription elongation factor GreA compare
PP_2345 -0.9 -2.5 conserved exported protein of unknown function compare
PP_4943 -0.9 -1.7 putative Glycosyl transferase compare
PP_1764 -0.8 -4.0 Phosphoglycolate phosphatase 2 compare
PP_2429 -0.8 -1.4 putative Membrane protein compare
PP_4247 -0.8 -1.2 Exonuclease compare
PP_1109 -0.8 -6.4 Transcriptional regulator, GntR family compare
PP_5453 -0.8 -1.6 conserved protein of unknown function compare
PP_5270 -0.8 -4.6 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_5628 -0.8 -1.9 conserved protein of unknown function compare
PP_4937 -0.8 -2.1 toluene tolerance protein compare
PP_4828 -0.8 -1.3 Precorrin-8X methylmutase compare
PP_2633 -0.8 -1.7 conserved protein of unknown function compare
PP_1553 -0.7 -1.5 conserved protein of unknown function compare
PP_5230 -0.7 -2.3 Tyrosine recombinase XerC compare
PP_5110 -0.7 -2.5 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2302 -0.7 -3.6 DNA-binding, ATP-dependent protease compare
PP_4124 -0.7 -3.0 NADH-quinone oxidoreductase subunit G compare
PP_3789 -0.7 -3.9 putative Efflux transporter compare
PP_0002 -0.7 -3.9 probable chromosome partition protein compare
PP_1426 -0.7 -5.7 L-aspartate oxidase compare
PP_4701 -0.7 -1.0 glucose-6-phosphate isomerase compare
PP_1428 -0.7 -1.6 Sigma factor AlgU negative regulatory protein compare
PP_4792 -0.7 -2.6 conserved exported protein of unknown function compare
PP_0261 -0.7 -3.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4129 -0.7 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3376 -0.7 -3.3 putative phosphonate dehydrogenase compare
PP_5295 -0.6 -1.6 conserved protein of unknown function compare
PP_4835 -0.6 -2.3 conserved exported protein of unknown function compare
PP_4808 -0.6 -2.0 23S rRNA m3psi1915 methyltransferase compare
PP_1304 -0.6 -4.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0735 -0.6 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_2737 -0.6 -1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3398 -0.6 -2.2 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1111 -0.6 -3.6 putative Synthetase compare
PP_5313 -0.6 -1.5 DNA-binding protein HU-alpha compare
PP_3924 -0.6 -2.8 conserved protein of unknown function compare
PP_1346 -0.6 -2.2 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_5008 -0.6 -1.7 Poly granule-associated protein compare
PP_0345 -0.6 -1.7 putative Heptose kinase WapP compare
PP_5621 -0.6 -1.1 protein of unknown function compare
PP_0888 -0.6 -1.1 Photosynthetic apparatus regulatory protein RegA compare
PP_2402 -0.6 -1.1 putative Sensor histidine kinase compare
PP_1770 -0.6 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1038 -0.6 -2.0 conserved protein of unknown function compare
PP_5352 -0.6 -4.3 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0856 -0.6 -1.2 conserved lipoprotein of unknown function compare
PP_5093 -0.6 -1.3 twitching motility protein compare
PP_0063 -0.6 -1.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3312 -0.6 -1.2 putative Heat shock protein compare
PP_5456 -0.6 -0.9 conserved protein of unknown function compare
PP_5507 -0.6 -1.4 protein of unknown function compare
PP_2307 -0.6 -1.1 conserved protein of unknown function compare
PP_1493 -0.5 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4131 -0.5 -2.7 NADH-quinone oxidoreductase subunit N compare
PP_3505 -0.5 -1.7 conserved protein of unknown function compare
PP_0127 -0.5 -2.6 Thiol:disulfide interchange protein compare
PP_0276 -0.5 -1.0 Transcriptional regulator, Cro/CI family compare
PP_4892 -0.5 -2.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4944 -0.5 -1.7 Carbamoyltransferase compare
PP_5035 -0.5 -3.5 Histidine utilization repressor compare
PP_5233 -0.5 -3.4 ammonium transporter AmtB compare
PP_4126 -0.5 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_4008 -0.5 -3.3 ATP-dependent serine protease compare
PP_3003 -0.5 -2.2 3-dehydroquinate dehydratase 3, type II compare
PP_5216 -0.5 -0.8 exopolyphosphatase compare
PP_5243 -0.5 -2.7 putative hydrolase compare
PP_5426 -0.5 -3.4 conserved protein of unknown function compare
PP_0677 -0.5 -1.5 putative Lipoprotein compare
PP_1097 -0.5 -1.0 Methionine--tRNA ligase compare
PP_4993 -0.5 -1.7 Glutathione synthetase compare
PP_0284 -0.5 -4.1 gamma-aminobutyrate permease compare
PP_5090 -0.5 -1.2 putative cell division protein compare
PP_2140 -0.5 -2.3 conserved protein of unknown function compare
PP_2929 -0.5 -3.1 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2217 -0.5 -1.8 enoyl-CoA hydratase compare
PP_1362 -0.5 -1.9 pyruvate kinase II compare
PP_5315 -0.5 -2.0 Rubredoxin-1 compare
PP_3926 -0.5 -1.4 short-chain dehydrogenase compare
PP_0378 -0.5 -3.5 Pyrroloquinoline-quinone synthase compare
PP_1059 -0.5 -3.6 Uncharacterized amino acid permease YtnA compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source D-Alanine in Pseudomonas putida KT2440

For nitrogen source D-Alanine across organisms