Experiment set27IT034 for Pseudomonas putida KT2440

Compare to:

D-Alanine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.1 -4.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5048 -6.4 -8.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4909 -6.2 -8.5 phosphoserine phosphatase compare
PP_0082 -6.1 -5.9 tryptophan synthase alpha chain compare
PP_5076 -5.9 -23.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_4680 -5.9 -17.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -5.9 -18.1 Ketol-acid reductoisomerase compare
PP_1988 -5.8 -11.7 3-isopropylmalate dehydrogenase compare
PP_1079 -5.8 -9.1 Ornithine carbamoyltransferase compare
PP_0290 -5.8 -11.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1088 -5.6 -12.5 Argininosuccinate synthase compare
PP_2371 -5.5 -7.6 Sulphite reductase hemoprotein, beta subunit compare
PP_3511 -5.5 -12.3 Branched-chain-amino-acid aminotransferase compare
PP_5014 -5.5 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4723 -5.4 -16.0 Carbamoyl-phosphate synthase large chain compare
PP_5185 -5.4 -7.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4724 -5.4 -9.0 Carbamoyl-phosphate synthase small chain compare
PP_4679 -5.4 -10.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5075 -5.3 -17.3 glutamate synthase (NADPH) beta subunit compare
PP_5097 -5.2 -18.4 homoserine O-acetyltransferase compare
PP_1985 -5.1 -6.1 3-isopropylmalate dehydratase large subunit compare
PP_0083 -5.0 -9.0 tryptophan synthase beta chain compare
PP_0966 -5.0 -14.4 Histidinol dehydrogenase compare
PP_5098 -4.9 -10.5 methionine biosynthesis protein MetW compare
PP_0184 -4.9 -8.1 Argininosuccinate lyase compare
PP_1231 -4.8 -9.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1995 -4.7 -12.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0420 -4.7 -14.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0417 -4.6 -19.6 Anthranilate synthase component 1 compare
PP_5047 -4.6 -10.3 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0289 -4.5 -8.8 Imidazoleglycerol-phosphate dehydratase compare
PP_0422 -4.5 -9.2 Indole-3-glycerol phosphate synthase compare
PP_0967 -4.5 -13.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5289 -4.5 -6.8 Acetylglutamate kinase compare
PP_1986 -4.4 -6.0 3-isopropylmalate dehydratase small subunit compare
PP_4890 -4.3 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_5155 -4.2 -6.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3999 -4.2 -8.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0965 -4.2 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2328 -4.0 -8.6 Phosphoadenosine phosphosulfate reductase compare
PP_2001 -4.0 -11.3 O-succinylhomoserine sulfhydrylase compare
PP_0292 -4.0 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5347 -4.0 -16.1 pyruvate carboxylase subunit A compare
PP_0421 -4.0 -7.7 Anthranilate phosphoribosyltransferase compare
PP_5128 -3.9 -8.2 Dihydroxy-acid dehydratase compare
PP_2327 -3.7 -11.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5346 -3.7 -10.3 pyruvate carboxylase subunit B compare
PP_1224 -3.6 -8.5 periplasmic subunit of the TolQRA transport system compare
PP_5015 -3.6 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1589 -3.5 -12.5 uridylyltransferase compare
PP_4700 -3.4 -4.0 pantothenate synthetase compare
PP_2088 -3.4 -6.4 RNA polymerase sigma factor SigX compare
PP_4999 -3.3 -2.3 dihydroorotase-like protein compare
PP_1025 -3.1 -9.2 2-isopropylmalate synthase compare
PP_5348 -3.1 -10.1 Transcriptional regulator, LysR family compare
PP_0787 -3.1 -6.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0339 -3.0 -4.9 Pyruvate dehydrogenase E1 component compare
PP_2370 -2.9 -3.5 conserved protein of unknown function compare
PP_5303 -2.9 -6.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0691 -2.8 -6.0 Glutamate 5-kinase compare
PP_4696 -2.7 -7.2 Nitrogen regulation protein NR(I) compare
PP_1217 -2.4 -5.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0362 -2.2 -12.5 Biotin synthase compare
PP_4098 -2.1 -2.4 UvrABC system protein C compare
PP_5095 -2.0 -1.9 pyrroline-5-carboxylate reductase compare
PP_5271 -2.0 -5.2 DNA-binding transcriptional dual regulator, leucine-binding conserved
PP_2378 -2.0 -2.9 Fe/S biogenesis protein NfuA compare
PP_1022 -1.9 -5.9 glucose 6-phosphate-1-dehydrogenase compare
PP_0291 -1.9 -2.2 conserved protein of unknown function compare
PP_4004 -1.8 -4.5 DNA translocase FtsK compare
PP_1734 -1.7 -2.7 Probable septum site-determining protein MinC compare
PP_3790 -1.6 -10.3 diaminopimelate epimerase compare
PP_1912 -1.6 -6.5 Phosphate acyltransferase compare
PP_5104 -1.5 -8.1 thiazole synthase compare
PP_4480 -1.3 -8.7 arginine N-succinyltransferase, subunit alpha compare
PP_2168 -1.3 -9.1 Transaldolase compare
PP_1468 -1.3 -3.5 Tyrosine recombinase XerD compare
PP_0363 -1.3 -9.2 8-amino-7-oxononanoate synthase compare
PP_1654 -1.3 -3.0 cysteine synthase B compare
PP_1233 -1.3 -4.7 sulfurtransferase compare
PP_4984 -1.2 -8.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1110 -1.2 -4.8 serine acetyltransferase compare
PP_0365 -1.2 -8.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0127 -1.2 -5.9 Thiol:disulfide interchange protein compare
PP_2390 -1.2 -6.3 Transcriptional regulator, LysR family compare
PP_0364 -1.1 -6.9 pimeloyl-[acp] methyl ester esterase compare
PP_4058 -1.1 -8.2 1,4-alpha-glucan branching enzyme compare
PP_4532 -1.1 -2.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0435 -1.1 -8.1 Peptidase, M23/M37 family compare
PP_5008 -1.1 -2.7 Poly granule-associated protein compare
PP_2388 -1.1 -2.6 Transporter, LysE family compare
PP_4122 -1.1 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4922 -1.0 -7.5 Phosphomethylpyrimidine synthase compare
PP_4799 -1.0 -0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4782 -1.0 -3.7 Phosphomethylpyrimidine kinase compare
PP_4693 -1.0 -4.3 RNA polymerase-binding transcription factor DksA compare
PP_0001 -1.0 -1.1 probable chromosome-partitioning protein compare
PP_4964 -1.0 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_4942 -1.0 -1.8 conserved protein of unknown function compare
PP_0377 -1.0 -1.0 coenzyme PQQ synthesis protein D compare
PP_4364 -1.0 -3.8 putative Anti-sigma F factor antagonist compare
PP_1664 -0.9 -3.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_3105 -0.9 -3.0 conserved membrane protein of unknown function compare
PP_0963 -0.9 -2.6 putative BolA family protein compare
PP_4695 -0.9 -6.0 Sensory box histidine kinase compare
PP_1216 -0.9 -2.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5453 -0.9 -2.1 conserved protein of unknown function compare
PP_1215 -0.9 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_5621 -0.9 -2.9 protein of unknown function compare
PP_5583 -0.9 -1.9 conserved protein of unknown function compare
PP_4120 -0.9 -2.9 NADH-quinone oxidoreductase subunit B compare
PP_1770 -0.9 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_2302 -0.9 -4.0 DNA-binding, ATP-dependent protease compare
PP_5350 -0.9 -2.5 Transcriptional regulator, RpiR family compare
PP_1348 -0.9 -3.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5230 -0.8 -2.5 Tyrosine recombinase XerC compare
PP_1366 -0.8 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_0673 -0.8 -2.4 conserved protein of unknown function compare
PP_0366 -0.8 -3.6 dethiobiotin synthetase compare
PP_4136 -0.8 -1.4 Transcriptional regulator, LuxR family compare
PP_1629 -0.8 -2.9 Protein RecA compare
PP_5227 -0.8 -4.4 diaminopimelate decarboxylase compare
PP_0406 -0.7 -3.1 Nucleotidyltransferase family protein compare
PP_1142 -0.7 -1.3 conserved protein of unknown function compare
PP_4528 -0.7 -1.1 conserved protein of unknown function compare
PP_1109 -0.7 -5.5 Transcriptional regulator, GntR family compare
PP_3043 -0.7 -1.8 conserved protein of unknown function compare
PP_0848 -0.7 -2.0 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1059 -0.7 -5.2 Uncharacterized amino acid permease YtnA compare
PP_1764 -0.7 -3.5 Phosphoglycolate phosphatase 2 compare
PP_3040 -0.7 -2.3 Pyocin R2_PP, holin compare
PP_0002 -0.7 -3.9 probable chromosome partition protein compare
PP_5652 -0.7 -2.0 conserved protein of unknown function, phage origin compare
PP_0735 -0.6 -1.1 molybdopterin-synthase adenylyltransferase compare
PP_5028 -0.6 -2.2 proline iminopeptidase compare
PP_3899 -0.6 -1.2 conserved protein of unknown function, hicB family compare
PP_2044 -0.6 -1.5 conserved inner membrane protein of unknown function compare
PP_1426 -0.6 -4.7 L-aspartate oxidase compare
PP_1362 -0.6 -1.9 pyruvate kinase II compare
PP_t29 -0.6 -1.0 tRNA-Ala compare
PP_3789 -0.6 -3.2 putative Efflux transporter compare
PP_1428 -0.6 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_5093 -0.6 -1.1 twitching motility protein compare
PP_1632 -0.6 -1.3 conserved protein of unknown function compare
PP_4699 -0.6 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2429 -0.6 -1.8 putative Membrane protein compare
PP_5035 -0.6 -3.6 Histidine utilization repressor compare
PP_4130 -0.6 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1128 -0.6 -1.5 OmpA family protein compare
PP_0260 -0.6 -3.3 ADP-sugar pyrophosphorylase compare
PP_5233 -0.6 -3.4 ammonium transporter AmtB compare
PP_4804 -0.6 -1.4 RlpA-like lipoprotein compare
PP_1304 -0.6 -4.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1239 -0.6 -2.6 Metallo-beta-lactamase family protein compare
PP_4073 -0.6 -2.1 conserved exported protein of unknown function compare
PP_4910 -0.6 -1.1 conserved protein of unknown function compare
PP_5456 -0.6 -0.7 conserved protein of unknown function compare
PP_0694 -0.6 -3.0 conserved protein of unknown function compare
PP_3892 -0.6 -1.4 conserved protein of unknown function compare
PP_4792 -0.6 -1.5 conserved exported protein of unknown function compare
PP_3098 -0.6 -1.1 conserved protein of unknown function compare
PP_0261 -0.6 -2.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1111 -0.6 -2.8 putative Synthetase compare
PP_3829 -0.6 -2.7 Molybdenum transport system permease protein ModB compare
PP_3672 -0.6 -2.6 conserved protein of unknown function compare
PP_3924 -0.6 -2.6 conserved protein of unknown function compare
PP_2414 -0.5 -1.2 conserved exported protein of unknown function compare
PP_1141 -0.5 -3.7 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_3810 -0.5 -1.1 conserved protein of unknown function compare
PP_4018 -0.5 -2.2 Acetyltransferase, GNAT family compare
PP_2025 -0.5 -2.3 Exonuclease SbcD compare
PP_5270 -0.5 -2.2 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_4314 -0.5 -2.9 conserved protein of unknown function compare
PP_2695 -0.5 -1.6 Transcriptional regulator, LysR family compare
PP_5216 -0.5 -1.1 exopolyphosphatase compare
PP_2348 -0.5 -2.6 Sensor histidine kinase compare
PP_4199 -0.5 -0.8 putative Lipoprotein compare
PP_3036 -0.5 -2.4 conserved protein of unknown function compare
PP_4481 -0.5 -2.5 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_3637 -0.5 -1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4520 -0.5 -1.9 conserved protein of unknown function compare
PP_4832 -0.5 -1.8 Precorrin-6x reductase compare
PP_5310 -0.5 -1.4 junction-specific ATP-dependent DNA helicase compare
PP_5240 -0.5 -1.1 Response regulator compare
PP_4060 -0.5 -4.1 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4129 -0.5 -1.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5486 -0.5 -1.0 conserved protein of unknown function compare
PP_4406 -0.5 -1.6 conserved protein of unknown function compare
PP_2878 -0.5 -0.8 conserved protein of unknown function compare
PP_0393 -0.5 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4891 -0.5 -2.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4238 -0.5 -1.1 conserved protein of unknown function compare
PP_1026 -0.5 -1.1 Peptidase, M23/M37 family compare
PP_4867 -0.5 -3.7 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) compare
PP_2345 -0.5 -1.3 conserved exported protein of unknown function compare
PP_4803 -0.5 -2.7 D-alanyl-D-alanine carboxypeptidase compare
PP_2280 -0.5 -1.0 conserved protein of unknown function compare
PP_4722 -0.5 -1.9 Transcription elongation factor GreA compare
PP_4124 -0.5 -2.1 NADH-quinone oxidoreductase subunit G compare
PP_0405 -0.5 -3.8 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source D-Alanine in Pseudomonas putida KT2440

For nitrogen source D-Alanine across organisms