Experiment set27IT033 for Pseudomonas putida KT2440

Compare to:

D-Lysine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0290 -7.3 -7.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0293 -7.1 -4.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4724 -7.0 -4.8 Carbamoyl-phosphate synthase small chain compare
PP_4909 -6.9 -6.7 phosphoserine phosphatase compare
PP_5098 -6.9 -8.2 methionine biosynthesis protein MetW compare
PP_4678 -6.8 -14.6 Ketol-acid reductoisomerase compare
PP_3511 -6.8 -10.4 Branched-chain-amino-acid aminotransferase compare
PP_1986 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_1985 -6.5 -6.3 3-isopropylmalate dehydratase large subunit compare
PP_0422 -6.4 -7.6 Indole-3-glycerol phosphate synthase compare
PP_5097 -6.4 -15.5 homoserine O-acetyltransferase compare
PP_4680 -6.3 -17.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4723 -6.3 -11.3 Carbamoyl-phosphate synthase large chain compare
PP_2088 -6.2 -7.4 RNA polymerase sigma factor SigX compare
PP_1988 -6.2 -11.1 3-isopropylmalate dehydrogenase compare
PP_0082 -6.2 -6.0 tryptophan synthase alpha chain compare
PP_2371 -6.0 -5.9 Sulphite reductase hemoprotein, beta subunit compare
PP_1079 -6.0 -9.2 Ornithine carbamoyltransferase compare
PP_5289 -6.0 -5.8 Acetylglutamate kinase compare
PP_0083 -6.0 -5.8 tryptophan synthase beta chain compare
PP_0184 -6.0 -4.1 Argininosuccinate lyase compare
PP_0420 -5.9 -15.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5076 -5.8 -24.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_0966 -5.8 -15.0 Histidinol dehydrogenase compare
PP_5015 -5.8 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4679 -5.8 -8.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -5.7 -12.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0967 -5.5 -13.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4890 -5.5 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_1088 -5.5 -12.8 Argininosuccinate synthase compare
PP_2001 -5.5 -10.6 O-succinylhomoserine sulfhydrylase compare
PP_5075 -5.5 -17.8 glutamate synthase (NADPH) beta subunit compare
PP_3594 -5.4 -11.0 L-lysine and D-lysine ABC transporter, permease component 1 (from data) compare
PP_3596 -5.4 -11.0 D-lysine oxidase compare
PP_0691 -5.3 -3.7 Glutamate 5-kinase compare
PP_0421 -5.3 -8.9 Anthranilate phosphoribosyltransferase compare
PP_0417 -5.2 -23.0 Anthranilate synthase component 1 compare
PP_5014 -5.2 -6.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_2327 -5.1 -10.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5128 -5.0 -8.2 Dihydroxy-acid dehydratase compare
PP_0965 -4.9 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3999 -4.9 -5.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0292 -4.8 -6.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3592 -4.8 -12.1 Transcriptional regulator, RpiR family compare
PP_3595 -4.7 -13.4 L-lysine and D-lysine ABC transporter, permease component 2 (from data) compare
PP_1231 -4.6 -9.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5185 -4.6 -8.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5048 -4.6 -9.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5303 -4.6 -6.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0289 -4.5 -7.3 Imidazoleglycerol-phosphate dehydratase compare
PP_3593 -4.1 -13.4 L-lysine and D-lysine ABC transporter, substrate-binding component (from data) compare
PP_5047 -4.1 -7.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5155 -4.0 -3.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4700 -4.0 -2.8 pantothenate synthetase compare
PP_1224 -3.8 -7.5 periplasmic subunit of the TolQRA transport system compare
PP_1025 -3.7 -11.3 2-isopropylmalate synthase compare
PP_1589 -3.6 -12.3 uridylyltransferase compare
PP_5347 -3.6 -14.0 pyruvate carboxylase subunit A compare
PP_4999 -3.4 -2.3 dihydroorotase-like protein compare
PP_5095 -3.3 -2.3 pyrroline-5-carboxylate reductase compare
PP_1022 -3.3 -7.7 glucose 6-phosphate-1-dehydrogenase compare
PP_0339 -3.2 -4.4 Pyruvate dehydrogenase E1 component compare
PP_2168 -3.2 -13.7 Transaldolase compare
PP_2370 -3.1 -2.9 conserved protein of unknown function compare
PP_5348 -3.1 -11.7 Transcriptional regulator, LysR family compare
PP_4696 -3.0 -7.7 Nitrogen regulation protein NR(I) compare
PP_2328 -2.9 -8.6 Phosphoadenosine phosphosulfate reductase compare
PP_0787 -2.9 -4.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5346 -2.8 -10.3 pyruvate carboxylase subunit B compare
PP_5257 -2.8 -14.2 L-pipecolate oxidase compare
PP_3597 -2.7 -4.2 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_3591 -2.7 -6.9 Delta 1-piperideine-2-carboxylate reductase compare
PP_1109 -2.6 -13.7 Transcriptional regulator, GntR family compare
PP_1110 -2.6 -2.5 serine acetyltransferase compare
PP_1111 -2.5 -7.5 putative Synthetase compare
PP_0735 -2.5 -3.0 molybdopterin-synthase adenylyltransferase compare
PP_1215 -2.3 -2.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_4693 -2.2 -5.9 RNA polymerase-binding transcription factor DksA compare
PP_5260 -2.2 -8.5 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) compare
PP_1217 -2.1 -5.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0291 -2.1 -2.1 conserved protein of unknown function compare
PP_1664 -2.1 -4.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_4642 -2.1 -1.7 Cyclic diguanosine monophosphate-binding protein compare
PP_5104 -2.0 -9.3 thiazole synthase compare
PP_5258 -2.0 -6.9 L-piperidine-6-carboxylate dehydrogenase compare
PP_4782 -1.9 -6.9 Phosphomethylpyrimidine kinase compare
PP_4004 -1.9 -4.4 DNA translocase FtsK compare
PP_1233 -1.9 -5.1 sulfurtransferase compare
PP_4964 -1.8 -3.0 D-erythrose 4-phosphate dehydrogenase compare
PP_1142 -1.8 -2.1 conserved protein of unknown function compare
PP_1654 -1.8 -4.8 cysteine synthase B compare
PP_4098 -1.8 -2.3 UvrABC system protein C compare
PP_1216 -1.8 -3.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0362 -1.7 -10.0 Biotin synthase compare
PP_1912 -1.7 -6.5 Phosphate acyltransferase compare
PP_3105 -1.7 -3.8 conserved membrane protein of unknown function compare
PP_4922 -1.7 -10.3 Phosphomethylpyrimidine synthase compare
PP_0435 -1.7 -11.6 Peptidase, M23/M37 family compare
PP_4058 -1.7 -10.8 1,4-alpha-glucan branching enzyme compare
PP_4364 -1.6 -4.8 putative Anti-sigma F factor antagonist compare
PP_1366 -1.6 -1.6 Transcriptional regulator MvaT, P16 subunit compare
PP_4126 -1.5 -2.6 NADH-quinone oxidoreductase subunit I compare
PP_1733 -1.5 -2.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_1348 -1.4 -4.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4699 -1.4 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3946 -1.4 -2.2 HTH-type transcriptional repressor NicR compare
PP_3376 -1.3 -4.4 putative phosphonate dehydrogenase compare
PP_0127 -1.3 -4.2 Thiol:disulfide interchange protein compare
PP_0393 -1.3 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5028 -1.2 -3.2 proline iminopeptidase compare
PP_4828 -1.2 -1.3 Precorrin-8X methylmutase compare
PP_5146 -1.2 -7.4 RNA pyrophosphohydrolase compare
PP_4943 -1.2 -2.4 putative Glycosyl transferase compare
PP_2414 -1.2 -1.5 conserved exported protein of unknown function compare
PP_0276 -1.1 -1.6 Transcriptional regulator, Cro/CI family compare
PP_5621 -1.1 -2.1 protein of unknown function compare
PP_3508 -1.1 -2.6 Protein CobW compare
PP_1734 -1.1 -2.3 Probable septum site-determining protein MinC compare
PP_0364 -1.1 -7.0 pimeloyl-[acp] methyl ester esterase compare
PP_1300 -1.1 -4.5 putative amino acid ABC transporter - ATP-binding subunit compare
PP_1468 -1.1 -2.3 Tyrosine recombinase XerD compare
PP_4799 -1.1 -0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4695 -1.0 -6.3 Sensory box histidine kinase compare
PP_2402 -1.0 -1.9 putative Sensor histidine kinase compare
PP_2145 -1.0 -5.3 beta-N-acetylglucosaminidase compare
PP_4984 -1.0 -7.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4532 -1.0 -1.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4131 -0.9 -4.4 NADH-quinone oxidoreductase subunit N compare
PP_1770 -0.9 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0022 -0.9 -1.1 hypothetical protein compare
PP_0365 -0.9 -6.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5216 -0.9 -1.4 exopolyphosphatase compare
PP_4124 -0.9 -3.5 NADH-quinone oxidoreductase subunit G compare
PP_0363 -0.9 -6.0 8-amino-7-oxononanoate synthase compare
PP_1054 -0.9 -2.1 Type II secretion pathway protein XcpZ compare
PP_5230 -0.9 -2.6 Tyrosine recombinase XerC compare
PP_1764 -0.9 -4.1 Phosphoglycolate phosphatase 2 compare
PP_0003 -0.9 -2.4 16S RNA methyltransferase compare
PP_1426 -0.9 -7.0 L-aspartate oxidase compare
PP_4804 -0.9 -1.8 RlpA-like lipoprotein compare
PP_0434 -0.8 -5.3 Anhydro-N-acetylmuramic acid kinase compare
PP_1362 -0.8 -2.4 pyruvate kinase II compare
PP_2345 -0.8 -1.8 conserved exported protein of unknown function compare
PP_4108 -0.8 -3.7 2-aminoadipate transaminase (EC 2.6.1.39) (from data) compare
PP_1352 -0.8 -2.7 UPF0234 protein PP_1352 compare
PP_2390 -0.8 -4.4 Transcriptional regulator, LysR family compare
PP_1297 -0.8 -4.7 putative amino-acid ABC transporter-binding protein YhdW compare
PP_3649 -0.8 -2.0 Transcriptional regulator, GntR family compare
PP_5486 -0.8 -1.3 conserved protein of unknown function compare
PP_0832 -0.8 -3.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4379 -0.8 -3.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0405 -0.8 -5.8 conserved protein of unknown function compare
PP_1355 -0.8 -6.0 Muropeptide permease AmpG compare
PP_2388 -0.8 -2.9 Transporter, LysE family compare
PP_1304 -0.7 -4.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2087 -0.7 -2.3 CmpX protein compare
PP_1676 -0.7 -3.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4701 -0.7 -1.0 glucose-6-phosphate isomerase compare
PP_3506 -0.7 -3.0 Magnesium chelatase, subunit ChII compare
PP_3409 -0.7 -1.7 putative Cobalamin biosynthesis protein cobE compare
PP_4993 -0.7 -2.3 Glutathione synthetase compare
PP_3378 -0.7 -1.4 putative 2-ketogluconokinase compare
PP_0809 -0.7 -4.6 disulfide bond formation protein B compare
PP_1430 -0.7 -4.9 putative periplasmic serine endoprotease DegP-like compare
PP_3916 -0.7 -2.5 conserved protein of unknown function compare
PP_4560 -0.7 -2.9 putative Ribonuclease BN compare
PP_1729 -0.7 -1.4 conserved protein of unknown function compare
PP_5225 -0.7 -1.1 frataxin compare
PP_0377 -0.7 -1.4 coenzyme PQQ synthesis protein D compare
PP_2148 -0.7 -4.5 transcription-repair coupling factor compare
PP_2217 -0.7 -1.9 enoyl-CoA hydratase compare
PP_1097 -0.7 -1.2 Methionine--tRNA ligase compare
PP_2773 -0.7 -1.7 conserved protein of unknown function compare
PP_2929 -0.7 -4.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3064 -0.7 -0.9 Phage tail protein compare
PP_1293 -0.7 -0.7 molybdopterin synthase small subunit compare
PP_5583 -0.7 -1.2 conserved protein of unknown function compare
PP_1629 -0.6 -2.5 Protein RecA compare
PP_5233 -0.6 -4.2 ammonium transporter AmtB compare
PP_0630 -0.6 -1.0 DNA gyrase inhibitor YacG compare
PP_1038 -0.6 -1.3 conserved protein of unknown function compare
PP_2348 -0.6 -3.4 Sensor histidine kinase compare
PP_5203 -0.6 -3.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_2928 -0.6 -3.9 Saccharopine dehydrogenase compare
PP_3248 -0.6 -1.0 Dyp-type peroxidase family protein compare
PP_2456 -0.6 -2.2 D-ribose ABC transporter - permease subunit compare
PP_4832 -0.6 -2.4 Precorrin-6x reductase compare
PP_5350 -0.6 -2.1 Transcriptional regulator, RpiR family compare
PP_1681 -0.6 -4.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_5094 -0.6 -3.2 putative enzyme with PLP binding domain compare
PP_1518 -0.6 -2.6 conserved exported protein of unknown function compare
PP_2378 -0.6 -1.2 Fe/S biogenesis protein NfuA compare
PP_3551 -0.6 -0.8 DNA-binding response regulator, LuxR family compare
PP_4387 -0.6 -1.3 conserved exported protein of unknown function compare
PP_4121 -0.6 -2.7 NADH-quinone oxidoreductase subunit C/D compare
PP_0366 -0.6 -3.4 dethiobiotin synthetase compare
PP_1862 -0.6 -2.4 conserved membrane protein of unknown function compare
PP_2504 -0.6 -1.2 putative tautomerase K2 compare
PP_3037 -0.6 -1.9 C4-type zinc finger protein, DksA/TraR family compare
PP_1679 -0.6 -1.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source D-Lysine in Pseudomonas putida KT2440

For nitrogen source D-Lysine across organisms