Experiment set27IT032 for Pseudomonas putida KT2440

Compare to:

D-Lysine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0290 -7.3 -7.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0293 -7.2 -4.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4680 -6.9 -14.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5048 -6.8 -8.1 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4678 -6.8 -15.8 Ketol-acid reductoisomerase compare
PP_1079 -6.7 -9.1 Ornithine carbamoyltransferase compare
PP_1988 -6.5 -10.9 3-isopropylmalate dehydrogenase compare
PP_0292 -6.5 -6.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4909 -6.5 -7.7 phosphoserine phosphatase compare
PP_0966 -6.5 -13.8 Histidinol dehydrogenase compare
PP_2371 -6.5 -4.5 Sulphite reductase hemoprotein, beta subunit compare
PP_5015 -6.4 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5097 -6.4 -16.1 homoserine O-acetyltransferase compare
PP_4679 -6.4 -7.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2088 -6.2 -7.3 RNA polymerase sigma factor SigX compare
PP_1995 -6.1 -11.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5185 -6.1 -6.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0083 -6.1 -6.0 tryptophan synthase beta chain compare
PP_5289 -6.1 -6.0 Acetylglutamate kinase compare
PP_3511 -6.1 -11.6 Branched-chain-amino-acid aminotransferase compare
PP_0967 -6.1 -14.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1985 -6.0 -7.2 3-isopropylmalate dehydratase large subunit compare
PP_4890 -6.0 -8.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_4724 -6.0 -8.2 Carbamoyl-phosphate synthase small chain compare
PP_0082 -5.9 -7.1 tryptophan synthase alpha chain compare
PP_3596 -5.9 -11.3 D-lysine oxidase compare
PP_0420 -5.9 -16.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5076 -5.9 -24.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_5098 -5.8 -11.2 methionine biosynthesis protein MetW compare
PP_4723 -5.8 -14.6 Carbamoyl-phosphate synthase large chain compare
PP_0422 -5.8 -8.8 Indole-3-glycerol phosphate synthase compare
PP_1088 -5.8 -13.4 Argininosuccinate synthase compare
PP_5303 -5.7 -6.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0184 -5.6 -6.7 Argininosuccinate lyase compare
PP_5075 -5.6 -17.8 glutamate synthase (NADPH) beta subunit compare
PP_1986 -5.5 -5.4 3-isopropylmalate dehydratase small subunit compare
PP_3593 -5.5 -13.7 L-lysine and D-lysine ABC transporter, substrate-binding component (from data) compare
PP_0417 -5.4 -22.7 Anthranilate synthase component 1 compare
PP_0421 -5.2 -8.4 Anthranilate phosphoribosyltransferase compare
PP_0289 -5.1 -8.6 Imidazoleglycerol-phosphate dehydratase compare
PP_2001 -5.0 -10.0 O-succinylhomoserine sulfhydrylase compare
PP_3595 -5.0 -12.1 L-lysine and D-lysine ABC transporter, permease component 2 (from data) compare
PP_5155 -4.8 -4.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3999 -4.8 -7.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5014 -4.8 -6.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_3592 -4.8 -11.6 Transcriptional regulator, RpiR family compare
PP_5047 -4.5 -9.6 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5128 -4.4 -8.3 Dihydroxy-acid dehydratase compare
PP_2327 -4.4 -10.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0965 -4.3 -11.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3594 -4.2 -12.2 L-lysine and D-lysine ABC transporter, permease component 1 (from data) compare
PP_1231 -4.2 -8.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -4.0 -7.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1025 -4.0 -10.5 2-isopropylmalate synthase compare
PP_4700 -3.7 -3.6 pantothenate synthetase compare
PP_1022 -3.7 -8.1 glucose 6-phosphate-1-dehydrogenase compare
PP_4696 -3.6 -8.1 Nitrogen regulation protein NR(I) compare
PP_3597 -3.6 -7.1 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_1224 -3.6 -8.6 periplasmic subunit of the TolQRA transport system compare
PP_0691 -3.6 -4.3 Glutamate 5-kinase compare
PP_0339 -3.5 -4.2 Pyruvate dehydrogenase E1 component compare
PP_1589 -3.5 -11.7 uridylyltransferase compare
PP_5347 -3.5 -16.1 pyruvate carboxylase subunit A compare
PP_2370 -3.5 -3.4 conserved protein of unknown function compare
PP_4999 -3.4 -2.4 dihydroorotase-like protein compare
PP_5095 -3.4 -2.3 pyrroline-5-carboxylate reductase compare
PP_5346 -3.4 -11.6 pyruvate carboxylase subunit B compare
PP_1215 -3.1 -2.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_5260 -3.1 -9.5 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) compare
PP_2168 -3.0 -10.7 Transaldolase compare
PP_0735 -3.0 -3.7 molybdopterin-synthase adenylyltransferase compare
PP_5348 -2.9 -9.9 Transcriptional regulator, LysR family compare
PP_1217 -2.7 -5.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1110 -2.6 -3.2 serine acetyltransferase compare
PP_5258 -2.6 -8.9 L-piperidine-6-carboxylate dehydrogenase compare
PP_2328 -2.6 -8.9 Phosphoadenosine phosphosulfate reductase compare
PP_5257 -2.6 -12.9 L-pipecolate oxidase compare
PP_1233 -2.5 -7.1 sulfurtransferase compare
PP_4693 -2.4 -6.4 RNA polymerase-binding transcription factor DksA compare
PP_1111 -2.4 -7.1 putative Synthetase compare
PP_1109 -2.4 -12.4 Transcriptional regulator, GntR family compare
PP_0291 -2.3 -2.0 conserved protein of unknown function compare
PP_1664 -2.3 -5.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_3591 -2.2 -6.5 Delta 1-piperideine-2-carboxylate reductase compare
PP_4782 -2.0 -5.9 Phosphomethylpyrimidine kinase compare
PP_4004 -2.0 -5.1 DNA translocase FtsK compare
PP_5104 -1.9 -7.2 thiazole synthase compare
PP_0435 -1.8 -12.6 Peptidase, M23/M37 family compare
PP_1734 -1.7 -2.8 Probable septum site-determining protein MinC compare
PP_4922 -1.6 -11.2 Phosphomethylpyrimidine synthase compare
PP_4364 -1.6 -7.4 putative Anti-sigma F factor antagonist compare
PP_0362 -1.6 -11.4 Biotin synthase compare
PP_4964 -1.6 -3.2 D-erythrose 4-phosphate dehydrogenase compare
PP_4699 -1.6 -4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5230 -1.4 -4.4 Tyrosine recombinase XerC compare
PP_4126 -1.4 -2.6 NADH-quinone oxidoreductase subunit I compare
PP_4058 -1.4 -8.7 1,4-alpha-glucan branching enzyme compare
PP_4828 -1.4 -2.1 Precorrin-8X methylmutase compare
PP_4804 -1.3 -1.8 RlpA-like lipoprotein compare
PP_1912 -1.3 -4.5 Phosphate acyltransferase compare
PP_1300 -1.3 -4.0 putative amino acid ABC transporter - ATP-binding subunit compare
PP_0127 -1.3 -6.5 Thiol:disulfide interchange protein compare
PP_3376 -1.3 -5.4 putative phosphonate dehydrogenase compare
PP_5216 -1.2 -2.0 exopolyphosphatase compare
PP_5114 -1.2 -1.6 putative adenine methyltransferase compare
PP_1348 -1.2 -5.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1994 -1.2 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_2402 -1.2 -2.7 putative Sensor histidine kinase compare
PP_4098 -1.2 -1.9 UvrABC system protein C compare
PP_1654 -1.2 -3.9 cysteine synthase B compare
PP_5328 -1.1 -2.5 putative phosphate transport system permease protein compare
PP_0393 -1.1 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4799 -1.1 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4379 -1.1 -5.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0434 -1.1 -6.2 Anhydro-N-acetylmuramic acid kinase compare
PP_5583 -1.1 -1.6 conserved protein of unknown function compare
PP_4910 -1.1 -2.6 conserved protein of unknown function compare
PP_0276 -1.0 -1.7 Transcriptional regulator, Cro/CI family compare
PP_5146 -1.0 -6.9 RNA pyrophosphohydrolase compare
PP_4108 -1.0 -4.4 2-aminoadipate transaminase (EC 2.6.1.39) (from data) compare
PP_3105 -1.0 -1.9 conserved membrane protein of unknown function compare
PP_4984 -1.0 -7.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4695 -1.0 -6.3 Sensory box histidine kinase compare
PP_1468 -1.0 -2.7 Tyrosine recombinase XerD compare
PP_5028 -1.0 -3.3 proline iminopeptidase compare
PP_4532 -1.0 -2.0 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0833 -1.0 -2.0 queuine tRNA-ribosyltransferase compare
PP_1764 -0.9 -3.7 Phosphoglycolate phosphatase 2 compare
PP_1128 -0.9 -1.9 OmpA family protein compare
PP_0363 -0.9 -6.7 8-amino-7-oxononanoate synthase compare
PP_5486 -0.9 -1.3 conserved protein of unknown function compare
PP_0405 -0.9 -7.4 conserved protein of unknown function compare
PP_t12 -0.9 -1.1 tRNA-Thr compare
PP_5393 -0.9 -1.2 putative metal-binding chaperone compare
PP_2145 -0.9 -4.8 beta-N-acetylglucosaminidase compare
PP_1430 -0.9 -6.0 putative periplasmic serine endoprotease DegP-like compare
PP_3946 -0.8 -1.3 HTH-type transcriptional repressor NicR compare
PP_0364 -0.8 -5.4 pimeloyl-[acp] methyl ester esterase compare
PP_2388 -0.8 -2.9 Transporter, LysE family compare
PP_5621 -0.8 -2.8 protein of unknown function compare
PP_0063 -0.8 -2.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2345 -0.8 -1.9 conserved exported protein of unknown function compare
PP_1824 -0.8 -1.9 Smr domain protein compare
PP_2976 -0.8 -2.0 putative transposase compare
PP_1729 -0.8 -2.1 conserved protein of unknown function compare
PP_1826 -0.8 -1.9 Hydrolase, isochorismatase family compare
PP_5313 -0.8 -2.6 DNA-binding protein HU-alpha compare
PP_0365 -0.8 -5.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4792 -0.8 -2.3 conserved exported protein of unknown function compare
PP_4124 -0.8 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_5045 -0.8 -2.4 tRNA sulfurtransferase compare
PP_1770 -0.8 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_3508 -0.8 -3.0 Protein CobW compare
PP_4829 -0.8 -2.0 putative precorrin-3B synthase compare
PP_0513 -0.7 -2.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3409 -0.7 -2.0 putative Cobalamin biosynthesis protein cobE compare
PP_1355 -0.7 -6.1 Muropeptide permease AmpG compare
PP_1216 -0.7 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3505 -0.7 -2.2 conserved protein of unknown function compare
PP_1681 -0.7 -5.1 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1297 -0.7 -5.0 putative amino-acid ABC transporter-binding protein YhdW compare
PP_2390 -0.7 -4.2 Transcriptional regulator, LysR family compare
PP_0366 -0.7 -3.8 dethiobiotin synthetase compare
PP_5267 -0.7 -1.6 putative cytochrome c5 compare
PP_0949 -0.7 -3.6 putative ATP-binding protein UPF0042 compare
PP_2324 -0.7 -3.4 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2148 -0.7 -5.5 transcription-repair coupling factor compare
PP_4207 -0.7 -2.8 conserved protein of unknown function compare
PP_1269 -0.7 -1.1 Universal stress protein family compare
PP_1303 -0.7 -3.3 Sulfate adenylyltransferase subunit 2 compare
PP_5090 -0.7 -1.2 putative cell division protein compare
PP_2414 -0.7 -1.1 conserved exported protein of unknown function compare
PP_1426 -0.6 -5.2 L-aspartate oxidase compare
PP_1678 -0.6 -1.9 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1362 -0.6 -2.8 pyruvate kinase II compare
PP_2929 -0.6 -3.5 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1268 -0.6 -2.8 putative HtrA suppressor protein sohA compare
PP_4895 -0.6 -1.8 tRNA dimethylallyltransferase compare
PP_1439 -0.6 -1.9 conserved exported protein of unknown function compare
PP_0809 -0.6 -4.8 disulfide bond formation protein B compare
PP_5426 -0.6 -4.5 conserved protein of unknown function compare
PP_1304 -0.6 -4.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4826 -0.6 -3.0 Precorrin-3B C17-methyltransferase compare
PP_2883 -0.6 -1.6 conserved protein of unknown function compare
PP_0383 -0.6 -4.7 Lysine 2-monooxygenase compare
PP_1872 -0.6 -4.6 glutamate-pyruvate aminotransferase compare
PP_3603 -0.6 -3.2 Transcriptional regulator, GntR family compare
PP_5580 -0.6 -1.8 protein of unknown function compare
PP_2341 -0.6 -1.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4832 -0.6 -2.8 Precorrin-6x reductase compare
PP_2348 -0.6 -3.1 Sensor histidine kinase compare
PP_0406 -0.6 -1.8 Nucleotidyltransferase family protein compare
PP_3190 -0.6 -1.4 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_1675 -0.6 -4.1 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4129 -0.6 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5110 -0.6 -1.6 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_5035 -0.6 -3.1 Histidine utilization repressor compare
PP_2302 -0.6 -2.9 DNA-binding, ATP-dependent protease compare
PP_2794 -0.6 -2.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1493 -0.6 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source D-Lysine in Pseudomonas putida KT2440

For nitrogen source D-Lysine across organisms