Experiment set27IT031 for Pseudomonas putida KT2440

Compare to:

3-aminobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_2088 -5.7 -7.0 RNA polymerase sigma factor SigX compare
PP_0596 -5.4 -17.4 Omega-amino acid--pyruvate aminotransferase conserved
PP_0293 -5.3 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0083 -5.3 -10.1 tryptophan synthase beta chain compare
PP_0422 -5.1 -9.2 Indole-3-glycerol phosphate synthase compare
PP_1079 -5.1 -6.2 Ornithine carbamoyltransferase compare
PP_0290 -4.9 -9.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -4.9 -10.3 tryptophan synthase alpha chain compare
PP_1995 -4.9 -11.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -4.8 -16.1 Argininosuccinate synthase compare
PP_0184 -4.7 -9.0 Argininosuccinate lyase compare
PP_2168 -4.7 -14.2 Transaldolase compare
PP_5048 -4.6 -8.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4754 -4.6 -9.8 Transcriptional regulator, TetR family compare
PP_5014 -4.4 -7.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4724 -4.4 -10.2 Carbamoyl-phosphate synthase small chain compare
PP_0417 -4.3 -21.0 Anthranilate synthase component 1 compare
PP_0420 -4.2 -13.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4680 -4.2 -16.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5075 -4.2 -17.7 glutamate synthase (NADPH) beta subunit compare
PP_4679 -4.2 -8.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4058 -4.1 -16.4 1,4-alpha-glucan branching enzyme compare
PP_3511 -4.1 -14.1 Branched-chain-amino-acid aminotransferase compare
PP_1985 -4.1 -8.5 3-isopropylmalate dehydratase large subunit compare
PP_0967 -4.1 -14.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0292 -4.0 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4909 -4.0 -12.9 phosphoserine phosphatase compare
PP_4723 -4.0 -18.5 Carbamoyl-phosphate synthase large chain compare
PP_5076 -3.9 -22.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_0289 -3.8 -9.9 Imidazoleglycerol-phosphate dehydratase compare
PP_5185 -3.8 -9.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4678 -3.7 -17.3 Ketol-acid reductoisomerase compare
PP_5128 -3.5 -9.5 Dihydroxy-acid dehydratase compare
PP_0421 -3.4 -7.7 Anthranilate phosphoribosyltransferase compare
PP_5289 -3.4 -6.2 Acetylglutamate kinase compare
PP_0966 -3.4 -13.4 Histidinol dehydrogenase compare
PP_1988 -3.2 -11.2 3-isopropylmalate dehydrogenase compare
PP_5047 -3.1 -9.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5098 -3.0 -11.5 methionine biosynthesis protein MetW compare
PP_1986 -3.0 -6.5 3-isopropylmalate dehydratase small subunit compare
PP_2001 -2.9 -11.8 O-succinylhomoserine sulfhydrylase compare
PP_4999 -2.9 -2.8 dihydroorotase-like protein compare
PP_5097 -2.8 -15.5 homoserine O-acetyltransferase compare
PP_5095 -2.7 -2.6 pyrroline-5-carboxylate reductase compare
PP_1656 -2.7 -11.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_4890 -2.6 -8.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_2370 -2.6 -6.0 conserved protein of unknown function compare
PP_5155 -2.5 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0965 -2.5 -13.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1589 -2.4 -10.4 uridylyltransferase compare
PP_2328 -2.2 -8.2 Phosphoadenosine phosphosulfate reductase compare
PP_1025 -2.1 -12.6 2-isopropylmalate synthase compare
PP_4696 -2.1 -7.2 Nitrogen regulation protein NR(I) compare
PP_0595 -2.1 -4.8 Transcriptional regulator, LysR family compare
PP_2245 -2.1 -9.6 Transcriptional regulator, Cro/CI family compare
PP_4060 -2.0 -13.7 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4693 -2.0 -5.4 RNA polymerase-binding transcription factor DksA compare
PP_4943 -2.0 -3.7 putative Glycosyl transferase compare
PP_5015 -1.9 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1217 -1.9 -5.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4036 -1.8 -9.9 D-hydantoinase/dihydropyrimidinase compare
PP_1215 -1.8 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_4038 -1.7 -9.9 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_3999 -1.7 -8.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4004 -1.7 -4.7 DNA translocase FtsK compare
PP_2371 -1.7 -7.0 Sulphite reductase hemoprotein, beta subunit compare
PP_4037 -1.7 -10.9 NADP-dependent dihydropyrimidine dehydrogenase subunit compare
PP_5227 -1.6 -6.4 diaminopimelate decarboxylase compare
PP_0691 -1.6 -3.4 Glutamate 5-kinase compare
PP_4699 -1.5 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3662 -1.5 -7.9 conserved protein of unknown function compare
PP_5145 -1.5 -13.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0291 -1.5 -2.2 conserved protein of unknown function compare
PP_1654 -1.5 -5.0 cysteine synthase B compare
PP_4364 -1.4 -5.4 putative Anti-sigma F factor antagonist compare
PP_0833 -1.4 -2.5 queuine tRNA-ribosyltransferase compare
PP_4782 -1.4 -7.3 Phosphomethylpyrimidine kinase compare
PP_5094 -1.4 -6.8 putative enzyme with PLP binding domain compare
PP_1198 -1.3 -3.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4910 -1.3 -2.3 conserved protein of unknown function compare
PP_4828 -1.3 -2.3 Precorrin-8X methylmutase compare
PP_5104 -1.3 -7.8 thiazole synthase compare
PP_2302 -1.2 -6.5 DNA-binding, ATP-dependent protease compare
PP_3189 -1.2 -7.3 cytosine deaminase / isoguanine deaminase compare
PP_0339 -1.2 -4.5 Pyruvate dehydrogenase E1 component compare
PP_1233 -1.2 -3.8 sulfurtransferase compare
PP_1493 -1.2 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4895 -1.2 -3.2 tRNA dimethylallyltransferase compare
PP_4799 -1.2 -0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4947 -1.2 -9.6 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_1734 -1.1 -2.5 Probable septum site-determining protein MinC compare
PP_5270 -1.1 -3.7 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_1468 -1.1 -3.5 Tyrosine recombinase XerD compare
PP_4964 -1.1 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_1655 -1.1 -2.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5093 -1.1 -2.3 twitching motility protein compare
PP_5347 -1.1 -7.6 pyruvate carboxylase subunit A compare
PP_1139 -1.1 -8.0 branched chain amino acid transporter - permease subunit compare
PP_5233 -1.1 -7.3 ammonium transporter AmtB compare
PP_1428 -1.1 -2.4 Sigma factor AlgU negative regulatory protein compare
PP_2414 -1.0 -2.9 conserved exported protein of unknown function compare
PP_4424 -1.0 -3.4 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1111 -1.0 -5.5 putative Synthetase compare
PP_0153 -1.0 -3.7 hypothetical protein compare
PP_3376 -1.0 -4.1 putative phosphonate dehydrogenase compare
PP_0001 -1.0 -1.6 probable chromosome-partitioning protein compare
PP_5216 -1.0 -1.5 exopolyphosphatase compare
PP_1110 -0.9 -4.3 serine acetyltransferase compare
PP_1137 -0.9 -5.3 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_0846 -0.9 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_1216 -0.9 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5346 -0.9 -5.8 pyruvate carboxylase subunit B compare
PP_2433 -0.9 -2.1 conserved protein of unknown function compare
PP_1994 -0.9 -1.4 tRNA pseudouridine (38-40)synthase compare
PP_1141 -0.9 -5.8 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_0914 -0.9 -6.9 GGDEF domain protein compare
PP_3377 -0.9 -6.7 2-ketogluconate transporter, putative compare
PP_1140 -0.9 -7.0 branched chain amino acid transporter - permease subunit compare
PP_2087 -0.9 -2.8 CmpX protein compare
PP_1109 -0.9 -7.3 Transcriptional regulator, GntR family compare
PP_3892 -0.9 -2.1 conserved protein of unknown function compare
PP_5528 -0.9 -2.7 conserved protein of unknown function compare
PP_2348 -0.9 -5.0 Sensor histidine kinase compare
PP_3880 -0.9 -2.0 conserved exported protein of unknown function compare
PP_4695 -0.9 -6.4 Sensory box histidine kinase compare
PP_2145 -0.8 -4.6 beta-N-acetylglucosaminidase compare
PP_0735 -0.8 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_0435 -0.8 -7.0 Peptidase, M23/M37 family compare
PP_2378 -0.8 -1.8 Fe/S biogenesis protein NfuA compare
PP_2880 -0.8 -2.6 Transcriptional regulator, TetR family compare
PP_2633 -0.8 -2.3 conserved protein of unknown function compare
PP_4477 -0.8 -5.3 N-succinylarginine dihydrolase compare
PP_3378 -0.8 -1.4 putative 2-ketogluconokinase compare
PP_4814 -0.8 -2.5 ATP-dependent protease La domain protein compare
PP_3105 -0.7 -2.6 conserved membrane protein of unknown function compare
PP_5253 -0.7 -3.0 Arylesterase compare
PP_1138 -0.7 -3.2 branched chain amino acid transporter - ATP binding subunit compare
PP_5055 -0.7 -2.6 Sulfurtransferase compare
PP_4785 -0.7 -3.7 conserved exported protein of unknown function compare
PP_3649 -0.7 -2.2 Transcriptional regulator, GntR family compare
PP_1293 -0.7 -1.7 molybdopterin synthase small subunit compare
PP_3248 -0.7 -1.3 Dyp-type peroxidase family protein compare
PP_2327 -0.7 -3.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0406 -0.7 -3.3 Nucleotidyltransferase family protein compare
PP_3123 -0.7 -4.6 acetoacetyl CoA-transferase (subunit B) compare
PP_4561 -0.7 -1.1 stress response protein compare
PP_4922 -0.7 -5.0 Phosphomethylpyrimidine synthase compare
PP_0405 -0.7 -5.8 conserved protein of unknown function compare
PP_4726 -0.7 -1.6 Chaperone protein DnaJ compare
PP_1860 -0.7 -4.0 Organic hydroperoxide resistance transcriptional regulator compare
PP_2247 -0.7 -2.3 putative Endoribonuclease compare
PP_4804 -0.7 -1.8 RlpA-like lipoprotein compare
PP_1022 -0.7 -3.1 glucose 6-phosphate-1-dehydrogenase compare
PP_4977 -0.6 -4.8 5,10-methylenetetrahydrofolate reductase compare
PP_4880 -0.6 -2.4 exoribonuclease R compare
PP_1128 -0.6 -1.5 OmpA family protein compare
PP_1672 -0.6 -2.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1355 -0.6 -5.4 Muropeptide permease AmpG compare
PP_5338 -0.6 -1.3 aspartate ammonia-lyase compare
PP_1328 -0.6 -2.2 Protein MraZ compare
PP_1397 -0.6 -2.5 conserved protein of unknown function compare
PP_3508 -0.6 -2.8 Protein CobW compare
PP_4482 -0.6 -2.6 Transcriptional regulator, AraC family compare
PP_1575 -0.6 -1.9 conserved protein of unknown function compare
PP_0880 -0.6 -2.4 dipeptide ABC transporter - putative membrane subunit compare
PP_0957 -0.6 -1.4 D-arabinose 5-phosphate isomerase compare
PP_0002 -0.6 -3.7 probable chromosome partition protein compare
PP_0855 -0.6 -1.8 conserved protein of unknown function compare
PP_0434 -0.6 -4.4 Anhydro-N-acetylmuramic acid kinase compare
PP_1513 -0.6 -1.7 Ribosomal RNA small subunit methyltransferase J compare
PP_4820 -0.6 -3.1 tRNA-dihydrouridine synthase B compare
PP_0683 -0.6 -2.5 conserved protein of unknown function compare
PP_3398 -0.6 -1.8 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5507 -0.6 -1.4 protein of unknown function compare
PP_2750 -0.6 -2.4 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3380 -0.6 -1.6 2-ketogluconate utilization repressor compare
PP_0948 -0.6 -1.9 Phosphocarrier protein HPr compare
PP_4130 -0.5 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2958 -0.5 -1.9 Glutaredoxin compare
PP_3036 -0.5 -3.0 conserved protein of unknown function compare
PP_3122 -0.5 -2.7 acetoacetyl CoA-transferase (subunit A) compare
PP_4009 -0.5 -3.0 ATP-dependent Clp protease adapter protein ClpS compare
PP_1269 -0.5 -0.9 Universal stress protein family compare
PP_5661 -0.5 -1.9 putative lipoprotein compare
PP_4792 -0.5 -1.5 conserved exported protein of unknown function compare
PP_2462 -0.5 -1.1 conserved protein of unknown function compare
PP_5609 -0.5 -2.3 conserved protein of unknown function compare
PP_0949 -0.5 -2.9 putative ATP-binding protein UPF0042 compare
PP_0007 -0.5 -2.2 conserved hypothetical protein compare
PP_4054 -0.5 -1.3 conserved protein of unknown function compare
PP_5168 -0.5 -1.3 sulfate/thiosulfate import ATP-binding protein compare
PP_0978 -0.5 -1.0 conserved protein of unknown function compare
PP_0832 -0.5 -2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1348 -0.5 -2.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1677 -0.5 -2.6 Adenosyl-cobyric acid synthase compare
PP_5035 -0.5 -3.0 Histidine utilization repressor compare
PP_1673 -0.5 -2.3 cobyrinate a,c-diamide synthase compare
PP_1439 -0.5 -1.2 conserved exported protein of unknown function compare
PP_1733 -0.5 -1.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_4288 -0.5 -1.7 ureidoglycolate lyase compare


Specific Phenotypes

For 11 genes in this experiment

For nitrogen source 3-aminobutyric acid in Pseudomonas putida KT2440

For nitrogen source 3-aminobutyric acid across organisms