Experiment set27IT030 for Pseudomonas putida KT2440

Compare to:

3-aminobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1986 -5.7 -5.6 3-isopropylmalate dehydratase small subunit compare
PP_0082 -5.6 -8.5 tryptophan synthase alpha chain compare
PP_0083 -5.2 -9.4 tryptophan synthase beta chain compare
PP_1995 -5.2 -13.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0596 -5.1 -15.3 Omega-amino acid--pyruvate aminotransferase conserved
PP_0422 -5.0 -6.8 Indole-3-glycerol phosphate synthase compare
PP_0184 -4.7 -9.1 Argininosuccinate lyase compare
PP_4754 -4.6 -12.2 Transcriptional regulator, TetR family compare
PP_0289 -4.6 -10.0 Imidazoleglycerol-phosphate dehydratase compare
PP_5048 -4.5 -9.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4909 -4.5 -12.1 phosphoserine phosphatase compare
PP_5289 -4.5 -7.4 Acetylglutamate kinase compare
PP_0290 -4.5 -10.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2168 -4.5 -15.5 Transaldolase compare
PP_0420 -4.4 -15.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0967 -4.4 -13.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -4.4 -19.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -4.2 -9.7 Ornithine carbamoyltransferase compare
PP_5075 -4.2 -17.7 glutamate synthase (NADPH) beta subunit compare
PP_4723 -4.2 -18.3 Carbamoyl-phosphate synthase large chain compare
PP_2088 -4.1 -5.6 RNA polymerase sigma factor SigX compare
PP_4724 -4.1 -9.8 Carbamoyl-phosphate synthase small chain compare
PP_0417 -4.1 -21.1 Anthranilate synthase component 1 compare
PP_5076 -4.0 -20.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_1985 -3.9 -8.3 3-isopropylmalate dehydratase large subunit compare
PP_4058 -3.9 -15.5 1,4-alpha-glucan branching enzyme compare
PP_1988 -3.9 -10.5 3-isopropylmalate dehydrogenase compare
PP_0293 -3.9 -5.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5185 -3.9 -9.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4678 -3.8 -18.2 Ketol-acid reductoisomerase compare
PP_3511 -3.6 -11.1 Branched-chain-amino-acid aminotransferase compare
PP_0966 -3.6 -13.6 Histidinol dehydrogenase compare
PP_0421 -3.6 -8.4 Anthranilate phosphoribosyltransferase compare
PP_1088 -3.6 -15.0 Argininosuccinate synthase compare
PP_4679 -3.5 -8.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5095 -3.5 -2.4 pyrroline-5-carboxylate reductase compare
PP_0292 -3.4 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4890 -3.4 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_5014 -3.2 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_5128 -3.1 -8.0 Dihydroxy-acid dehydratase compare
PP_5098 -3.0 -10.4 methionine biosynthesis protein MetW compare
PP_5047 -2.9 -9.7 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0846 -2.8 -3.2 DnaK-like molecular chaperone specific for IscU compare
PP_5097 -2.8 -15.4 homoserine O-acetyltransferase compare
PP_1589 -2.8 -11.6 uridylyltransferase compare
PP_5155 -2.8 -3.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0965 -2.8 -13.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4999 -2.7 -2.6 dihydroorotase-like protein compare
PP_2001 -2.7 -13.0 O-succinylhomoserine sulfhydrylase compare
PP_1656 -2.4 -10.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_4038 -2.3 -10.4 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_2328 -2.2 -7.7 Phosphoadenosine phosphosulfate reductase compare
PP_4696 -2.1 -7.5 Nitrogen regulation protein NR(I) compare
PP_5015 -2.0 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2370 -2.0 -4.5 conserved protein of unknown function compare
PP_1198 -2.0 -5.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2371 -2.0 -7.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1025 -2.0 -9.3 2-isopropylmalate synthase compare
PP_1734 -1.9 -2.8 Probable septum site-determining protein MinC compare
PP_4060 -1.9 -13.9 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1654 -1.9 -5.2 cysteine synthase B compare
PP_4364 -1.8 -5.1 putative Anti-sigma F factor antagonist compare
PP_4036 -1.8 -8.9 D-hydantoinase/dihydropyrimidinase compare
PP_0691 -1.8 -5.3 Glutamate 5-kinase compare
PP_2245 -1.8 -9.9 Transcriptional regulator, Cro/CI family compare
PP_0595 -1.7 -4.3 Transcriptional regulator, LysR family compare
PP_0735 -1.7 -3.4 molybdopterin-synthase adenylyltransferase compare
PP_1994 -1.7 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_1138 -1.6 -6.2 branched chain amino acid transporter - ATP binding subunit compare
PP_4037 -1.5 -10.4 NADP-dependent dihydropyrimidine dehydrogenase subunit compare
PP_1110 -1.5 -3.5 serine acetyltransferase compare
PP_3662 -1.5 -8.1 conserved protein of unknown function compare
PP_1468 -1.5 -3.9 Tyrosine recombinase XerD compare
PP_3999 -1.5 -6.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4693 -1.5 -4.0 RNA polymerase-binding transcription factor DksA compare
PP_5227 -1.4 -5.5 diaminopimelate decarboxylase compare
PP_4943 -1.4 -2.8 putative Glycosyl transferase compare
PP_4004 -1.4 -3.9 DNA translocase FtsK compare
PP_5145 -1.4 -12.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4199 -1.4 -1.8 putative Lipoprotein compare
PP_5270 -1.3 -4.7 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_1493 -1.3 -4.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5094 -1.3 -4.6 putative enzyme with PLP binding domain compare
PP_5233 -1.3 -7.6 ammonium transporter AmtB compare
PP_1233 -1.3 -4.8 sulfurtransferase compare
PP_3378 -1.2 -2.4 putative 2-ketogluconokinase compare
PP_0834 -1.2 -1.9 Sec translocation complex subunit YajC compare
PP_3098 -1.2 -1.9 conserved protein of unknown function compare
PP_1216 -1.2 -2.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1428 -1.2 -2.3 Sigma factor AlgU negative regulatory protein compare
PP_1109 -1.1 -9.4 Transcriptional regulator, GntR family compare
PP_0339 -1.1 -3.9 Pyruvate dehydrogenase E1 component compare
PP_3189 -1.1 -6.3 cytosine deaminase / isoguanine deaminase compare
PP_2302 -1.1 -5.5 DNA-binding, ATP-dependent protease compare
PP_4799 -1.1 -0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4699 -1.1 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4964 -1.1 -2.1 D-erythrose 4-phosphate dehydrogenase compare
PP_5104 -1.0 -6.0 thiazole synthase compare
PP_4782 -1.0 -4.7 Phosphomethylpyrimidine kinase compare
PP_4785 -1.0 -4.2 conserved exported protein of unknown function compare
PP_5347 -1.0 -6.7 pyruvate carboxylase subunit A compare
PP_1111 -1.0 -4.8 putative Synthetase compare
PP_1217 -1.0 -3.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1140 -1.0 -7.9 branched chain amino acid transporter - permease subunit compare
PP_0291 -0.9 -2.2 conserved protein of unknown function compare
PP_4947 -0.9 -7.5 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_3649 -0.9 -2.3 Transcriptional regulator, GntR family compare
PP_5346 -0.9 -6.6 pyruvate carboxylase subunit B compare
PP_4695 -0.9 -7.0 Sensory box histidine kinase compare
PP_3376 -0.9 -4.4 putative phosphonate dehydrogenase compare
PP_5230 -0.9 -2.4 Tyrosine recombinase XerC compare
PP_1655 -0.9 -2.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1137 -0.9 -5.2 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_1139 -0.9 -6.9 branched chain amino acid transporter - permease subunit compare
PP_0435 -0.9 -6.9 Peptidase, M23/M37 family compare
PP_1141 -0.9 -5.7 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_1733 -0.8 -1.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_3122 -0.8 -4.0 acetoacetyl CoA-transferase (subunit A) compare
PP_2580 -0.8 -3.3 conserved protein of unknown function compare
PP_0914 -0.8 -5.6 GGDEF domain protein compare
PP_1362 -0.8 -3.1 pyruvate kinase II compare
PP_5216 -0.8 -1.1 exopolyphosphatase compare
PP_4477 -0.7 -3.7 N-succinylarginine dihydrolase compare
PP_2044 -0.7 -1.9 conserved inner membrane protein of unknown function compare
PP_2433 -0.7 -1.8 conserved protein of unknown function compare
PP_2348 -0.7 -3.6 Sensor histidine kinase compare
PP_1355 -0.7 -6.0 Muropeptide permease AmpG compare
PP_4895 -0.7 -1.7 tRNA dimethylallyltransferase compare
PP_2402 -0.7 -1.7 putative Sensor histidine kinase compare
PP_0002 -0.7 -3.8 probable chromosome partition protein compare
PP_1022 -0.7 -2.9 glucose 6-phosphate-1-dehydrogenase compare
PP_5705 -0.6 -1.1 protein of unknown function compare
PP_5456 -0.6 -1.0 conserved protein of unknown function compare
PP_0949 -0.6 -3.2 putative ATP-binding protein UPF0042 compare
PP_5717 -0.6 -1.8 conserved protein of unknown function compare
PP_3377 -0.6 -4.9 2-ketogluconate transporter, putative compare
PP_1366 -0.6 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_0405 -0.6 -5.3 conserved protein of unknown function compare
PP_0164 -0.6 -3.1 conserved protein of unknown function compare
PP_0948 -0.6 -2.0 Phosphocarrier protein HPr compare
PP_2439 -0.6 -1.3 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_1729 -0.6 -1.7 conserved protein of unknown function compare
PP_4977 -0.6 -4.4 5,10-methylenetetrahydrofolate reductase compare
PP_1348 -0.6 -3.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4480 -0.6 -3.9 arginine N-succinyltransferase, subunit alpha compare
PP_4922 -0.6 -4.5 Phosphomethylpyrimidine synthase compare
PP_1215 -0.6 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_2378 -0.6 -1.2 Fe/S biogenesis protein NfuA compare
PP_5507 -0.6 -1.4 protein of unknown function compare
PP_0995 -0.6 -3.5 conserved membrane protein of unknown function compare
PP_5271 -0.6 -1.7 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_3123 -0.6 -4.0 acetoacetyl CoA-transferase (subunit B) compare
PP_1442 -0.6 -2.4 conserved protein of unknown function compare
PP_2375 -0.6 -4.6 cobalamin-dependent methionine synthase compare
PP_1764 -0.6 -3.0 Phosphoglycolate phosphatase 2 compare
PP_0978 -0.6 -1.2 conserved protein of unknown function compare
PP_3757 -0.6 -2.0 Chemotaxis protein CheY compare
PP_2326 -0.5 -3.7 Universal stress protein compare
PP_5035 -0.5 -3.4 Histidine utilization repressor compare
PP_0434 -0.5 -3.4 Anhydro-N-acetylmuramic acid kinase compare
PP_1553 -0.5 -2.1 conserved protein of unknown function compare
PP_1679 -0.5 -1.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2327 -0.5 -2.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0616 -0.5 -2.0 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_4828 -0.5 -0.7 Precorrin-8X methylmutase compare
PP_4073 -0.5 -1.4 conserved exported protein of unknown function compare
PP_4804 -0.5 -1.3 RlpA-like lipoprotein compare
PP_3505 -0.5 -1.6 conserved protein of unknown function compare
PP_4212 -0.5 -2.8 pyoverdine biosynthesis related protein compare
PP_4632 -0.5 -3.5 dihydrofolate reductase / dihydromonapterin reductase compare
PP_1802 -0.5 -4.5 glycosyl transferase compare
PP_4098 -0.5 -0.9 UvrABC system protein C compare
PP_4273 -0.5 -1.2 Transcriptional regulator, MerR family compare
PP_4010 -0.5 -1.9 DNA replication inhibitor compare
PP_0406 -0.5 -2.3 Nucleotidyltransferase family protein compare
PP_0653 -0.5 -1.1 conserved protein of unknown function compare
PP_2976 -0.5 -0.6 putative transposase compare
PP_4287 -0.5 -2.9 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
PP_2247 -0.5 -2.1 putative Endoribonuclease compare
PP_4124 -0.5 -2.2 NADH-quinone oxidoreductase subunit G compare
PP_1294 -0.5 -2.1 molybdopterin synthase large subunit compare
PP_3398 -0.5 -1.8 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2087 -0.5 -1.3 CmpX protein compare
PP_1876 -0.5 -2.0 putative ATP/GTP-binding protein of the AAA+ family compare
PP_4400 -0.5 -3.0 Bkd operon transcriptional regulator compare
PP_4009 -0.5 -2.6 ATP-dependent Clp protease adapter protein ClpS compare
PP_1672 -0.5 -1.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3318 -0.5 -1.5 conserved protein of unknown function compare
PP_3333 -0.5 -1.4 conserved protein of unknown function compare
PP_1681 -0.5 -3.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_5453 -0.5 -1.0 conserved protein of unknown function compare
PP_2118 -0.5 -1.3 conserved protein of unknown function compare
PP_2846 -0.5 -1.6 urease accessory protein compare
PP_4505 -0.5 -2.7 Sensor histidine kinase compare
PP_0719 -0.5 -0.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2785 -0.5 -2.5 conserved exported protein of unknown function compare
PP_1629 -0.5 -1.8 Protein RecA compare
PP_2582 -0.4 -2.5 putative Heme oxygenase compare
PP_3840 -0.4 -1.1 conserved protein of unknown function compare
PP_1763 -0.4 -1.9 putative oxidoreductase compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source 3-aminobutyric acid in Pseudomonas putida KT2440

For nitrogen source 3-aminobutyric acid across organisms