Experiment set27IT029 for Pseudomonas putida KT2440

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DL-2-Aminobutyric acid nitrogen source

Genes with specific phenotypes:

  gene name fitness t score description  
PP_2245 -4.3 -9.8 Transcriptional regulator, Cro/CI family compare
PP_3654 -4.2 -7.7 leucine-responsive regulatory protein compare
PP_1067 -3.6 -13.8 Sensor histidine kinase compare
PP_4779 -3.5 -18.9 AMP nucleosidase compare
PP_0680 -3.4 -21.2 ATP-dependent protease-like protein compare
PP_0137 -3.0 -13.3 glutamate/aspartate-proton DAACS transporter compare
PP_1066 -2.9 -5.5 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4654 -2.5 -11.2 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_5270 -2.5 -8.7 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_0575 -2.5 -7.3 conserved membrane protein of unknown function compare
PP_2211 -2.4 -10.6 Transcriptional regulator, AraC family compare
PP_5233 -2.2 -9.9 ammonium transporter AmtB compare
PP_5271 -2.1 -6.3 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_4403 -2.0 -10.6 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_2216 -1.9 -9.0 short-chain acyl-CoA dehydrogenase compare
PP_4632 -1.8 -6.5 dihydrofolate reductase / dihydromonapterin reductase compare
PP_4401 -1.8 -9.6 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_4402 -1.7 -9.6 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_3380 -1.7 -5.6 2-ketogluconate utilization repressor compare
PP_0597 -1.7 -12.2 methylmalonate-semialdehyde dehydrogenase compare
PP_4692 -1.7 -9.9 putative aspartate/tyrosine/aromatic aminotransferase compare
PP_3377 -1.6 -10.6 2-ketogluconate transporter, putative compare
PP_4487 -1.6 -13.3 acetyl-CoA synthetase compare
PP_4896 -1.5 -7.9 DNA mismatch repair protein MutL compare
PP_4985 -1.5 -8.6 16S rRNA m3U1498 methyltransferase compare
PP_4947 -1.5 -11.6 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_0247 -1.5 -8.0 Osmolarity sensor protein EnvZ compare
PP_4400 -1.4 -8.0 Bkd operon transcriptional regulator compare
PP_3504 -1.3 -6.1 conserved protein of unknown function compare
PP_1842 -1.2 -5.1 Glutamine amidotransferase, class I compare
PP_4893 -1.1 -6.0 GTPase HflX compare
PP_0146 -1.1 -8.2 putative transport protein compare
PP_5332 -1.1 -6.0 conserved protein of unknown function compare
PP_0428 -1.1 -6.6 aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase compare
PP_0594 -1.1 -6.5 Transcriptional regulator, TetR family compare
PP_0899 -1.0 -5.2 putative Ferredoxin reductase compare
PP_2096 +1.1 8.4 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase compare
PP_0234 +1.1 9.2 outer-membrane porin E compare
PP_4641 +1.1 8.3 putative transporter compare
PP_0864 +1.1 8.5 ornithine decarboxylase compare
PP_4059 +1.2 8.9 fused trehalose synthase B/maltokinase compare
PP_5072 +1.2 10.2 efflux transporter compare
PP_0020 +1.3 10.6 hypothetical protein compare
PP_1236 +1.4 7.1 putative Glycine cleavage system transcriptional repressor compare
PP_1827 +1.5 9.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_2181 +1.5 7.0 Transcriptional regulator, Cro/CI family compare
PP_1291 +1.5 10.3 PhoH family protein compare
PP_4959 +1.6 11.6 diguanylate cyclase compare
PP_0850 +1.6 8.6 Dual-specificity RNA methyltransferase RlmN compare
PP_4483 +1.6 6.0 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_3761 +1.6 12.3 Sensor histidine kinase/response regulator compare
PP_0118 +1.6 8.7 zinc import ATP-binding protein compare
PP_1758 +1.8 9.8 putative sulfurtransferase containing rhodanese-like domain compare
PP_0380 +1.9 5.7 Coenzyme PQQ synthesis protein A compare
PP_3415 +2.2 8.3 Transcriptional regulator, LacI family compare
PP_4484 +2.5 21.2 histidine / lysine / arginine / ornithine ABC transporter - permease subunit compare
PP_4485 +2.5 17.0 histidine / lysine / arginine / ornithine ABC transporter - permease subunit compare
PP_4486 +2.6 15.7 lysine / arginine / ornithine ABC transporter - periplasmic binding protein compare
PP_0409 +3.1 5.9 Sensory box histidine kinase compare
PP_1444 +3.1 27.9 quinoprotein glucose dehydrogenase compare
PP_4184 +3.4 26.0 branched chain amino acid transporter compare
PP_2389 +3.9 19.0 conserved protein of unknown function compare


Specific phenotypes for nitrogen source DL-2-Aminobutyric acid across organisms