Experiment set27IT029 for Pseudomonas putida KT2440

Compare to:

DL-2-Aminobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_2088 -6.1 -6.7 RNA polymerase sigma factor SigX compare
PP_0082 -5.8 -6.9 tryptophan synthase alpha chain compare
PP_0292 -5.3 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4909 -5.2 -10.6 phosphoserine phosphatase compare
PP_0406 -5.1 -6.8 Nucleotidyltransferase family protein compare
PP_5048 -5.0 -8.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0422 -4.9 -7.1 Indole-3-glycerol phosphate synthase compare
PP_0293 -4.9 -3.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4723 -4.8 -16.3 Carbamoyl-phosphate synthase large chain compare
PP_5075 -4.8 -18.4 glutamate synthase (NADPH) beta subunit compare
PP_1025 -4.7 -15.4 2-isopropylmalate synthase compare
PP_2337 -4.7 -3.2 aconitate isomerase compare
PP_1088 -4.7 -14.1 Argininosuccinate synthase compare
PP_0967 -4.7 -12.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0420 -4.7 -16.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0083 -4.7 -9.9 tryptophan synthase beta chain compare
PP_0184 -4.6 -8.9 Argininosuccinate lyase compare
PP_4678 -4.6 -17.2 Ketol-acid reductoisomerase compare
PP_4710 -4.5 -15.5 tRNA pseudouridine 55 synthase compare
PP_0417 -4.5 -20.5 Anthranilate synthase component 1 compare
PP_5076 -4.5 -22.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_2168 -4.4 -14.5 Transaldolase compare
PP_5289 -4.4 -6.5 Acetylglutamate kinase compare
PP_4680 -4.4 -17.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5350 -4.3 -5.9 Transcriptional regulator, RpiR family compare
PP_1995 -4.3 -10.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2245 -4.3 -9.8 Transcriptional regulator, Cro/CI family compare
PP_5185 -4.2 -8.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4679 -4.2 -8.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1655 -4.2 -12.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3654 -4.2 -7.7 leucine-responsive regulatory protein compare
PP_1362 -4.2 -6.4 pyruvate kinase II compare
PP_3511 -4.2 -8.5 Branched-chain-amino-acid aminotransferase compare
PP_1985 -4.2 -6.0 3-isopropylmalate dehydratase large subunit compare
PP_4058 -4.1 -15.4 1,4-alpha-glucan branching enzyme compare
PP_0691 -4.0 -5.5 Glutamate 5-kinase compare
PP_0966 -4.0 -14.1 Histidinol dehydrogenase compare
PP_5128 -4.0 -10.9 Dihydroxy-acid dehydratase compare
PP_0290 -4.0 -11.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5155 -4.0 -5.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4910 -3.9 -3.6 conserved protein of unknown function compare
PP_0949 -3.9 -9.5 putative ATP-binding protein UPF0042 compare
PP_0980 -3.9 -9.6 Probable cytosol aminopeptidase compare
PP_5217 -3.9 -22.2 Polyphosphate kinase compare
PP_1988 -3.9 -10.8 3-isopropylmalate dehydrogenase compare
PP_0289 -3.9 -7.6 Imidazoleglycerol-phosphate dehydratase compare
PP_1079 -3.8 -8.6 Ornithine carbamoyltransferase compare
PP_5014 -3.8 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0421 -3.7 -8.7 Anthranilate phosphoribosyltransferase compare
PP_0965 -3.7 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4782 -3.6 -6.6 Phosphomethylpyrimidine kinase compare
PP_2371 -3.6 -9.5 Sulphite reductase hemoprotein, beta subunit compare
PP_1656 -3.6 -12.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_1067 -3.6 -13.8 Sensor histidine kinase compare
PP_4724 -3.5 -7.9 Carbamoyl-phosphate synthase small chain compare
PP_2336 -3.5 -4.8 aconitate hydratase 1 compare
PP_4890 -3.5 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_2214 -3.5 -7.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4779 -3.5 -18.9 AMP nucleosidase compare
PP_0340 -3.5 -17.5 Glutamate-ammonia-ligase adenylyltransferase compare
PP_5104 -3.4 -11.8 thiazole synthase compare
PP_1986 -3.4 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_0680 -3.4 -21.2 ATP-dependent protease-like protein compare
PP_1022 -3.4 -7.5 glucose 6-phosphate-1-dehydrogenase compare
PP_4999 -3.3 -2.2 dihydroorotase-like protein compare
PP_3999 -3.2 -9.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0735 -3.1 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_4922 -3.1 -16.0 Phosphomethylpyrimidine synthase compare
PP_4700 -3.0 -4.1 pantothenate synthetase compare
PP_2370 -3.0 -4.3 conserved protein of unknown function compare
PP_3649 -3.0 -3.5 Transcriptional regulator, GntR family compare
PP_4480 -3.0 -11.7 arginine N-succinyltransferase, subunit alpha compare
PP_0137 -3.0 -13.3 glutamate/aspartate-proton DAACS transporter compare
PP_5058 -3.0 -5.0 Carboxy-terminal-processing protease compare
PP_5047 -3.0 -9.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1217 -2.9 -5.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1066 -2.9 -5.5 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_5090 -2.9 -3.8 putative cell division protein compare
PP_3653 -2.8 -4.1 Transporter, LysE family compare
PP_5145 -2.8 -18.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1224 -2.8 -7.2 periplasmic subunit of the TolQRA transport system compare
PP_1233 -2.8 -6.7 sulfurtransferase compare
PP_5015 -2.8 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1348 -2.8 -6.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4803 -2.7 -10.0 D-alanyl-D-alanine carboxypeptidase compare
PP_4699 -2.7 -6.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1764 -2.6 -9.2 Phosphoglycolate phosphatase 2 compare
PP_2215 -2.6 -4.6 acetyl-CoA acetyltransferase compare
PP_0787 -2.6 -7.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3376 -2.6 -6.2 putative phosphonate dehydrogenase compare
PP_4654 -2.5 -11.2 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_1654 -2.5 -5.9 cysteine synthase B compare
PP_3417 -2.5 -7.3 D-gluconate transporter compare
PP_5270 -2.5 -8.7 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_0575 -2.5 -7.3 conserved membrane protein of unknown function compare
PP_2211 -2.4 -10.6 Transcriptional regulator, AraC family compare
PP_3662 -2.4 -10.9 conserved protein of unknown function compare
PP_5331 -2.4 -2.4 Long-chain acyl-CoA thioester hydrolase compare
PP_0362 -2.4 -14.2 Biotin synthase compare
PP_1872 -2.4 -12.6 glutamate-pyruvate aminotransferase compare
PP_1110 -2.3 -6.4 serine acetyltransferase compare
PP_1231 -2.3 -7.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0291 -2.3 -2.6 conserved protein of unknown function compare
PP_4364 -2.3 -8.8 putative Anti-sigma F factor antagonist compare
PP_2302 -2.3 -6.2 DNA-binding, ATP-dependent protease compare
PP_1994 -2.3 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_0833 -2.2 -3.3 queuine tRNA-ribosyltransferase compare
PP_1328 -2.2 -3.9 Protein MraZ compare
PP_5233 -2.2 -9.9 ammonium transporter AmtB compare
PP_5045 -2.1 -4.5 tRNA sulfurtransferase compare
PP_0185 -2.1 -11.4 Positive alginate biosynthesis regulatory protein compare
PP_4722 -2.1 -5.6 Transcription elongation factor GreA compare
PP_0725 -2.1 -6.0 conserved hypothetical TPR repeat protein compare
PP_2328 -2.1 -7.4 Phosphoadenosine phosphosulfate reductase compare
PP_4681 -2.1 -2.4 conserved protein of unknown function compare
PP_5271 -2.1 -6.3 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_3539 -2.0 -3.9 putative Transcriptional regulator compare
PP_1020 -2.0 -2.5 putative glucose-6-phosphate 1-epimerase compare
PP_4944 -2.0 -4.0 Carbamoyltransferase compare
PP_5095 -2.0 -1.7 pyrroline-5-carboxylate reductase compare
PP_4403 -2.0 -10.6 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_5203 -2.0 -6.5 5-formyltetrahydrofolate cyclo-ligase compare
PP_2327 -1.9 -7.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2216 -1.9 -9.0 short-chain acyl-CoA dehydrogenase compare
PP_1216 -1.9 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4874 -1.9 -1.6 50S ribosomal protein L9 compare
PP_1493 -1.8 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5337 -1.8 -4.8 LysR family transcriptional regulator compare
PP_4632 -1.8 -6.5 dihydrofolate reductase / dihydromonapterin reductase compare
PP_4401 -1.8 -9.6 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_4004 -1.8 -3.9 DNA translocase FtsK compare
PP_1142 -1.8 -1.8 conserved protein of unknown function compare
PP_4897 -1.8 -3.8 N-acetylmuramoyl-L-alanine amidase compare
PP_5008 -1.7 -2.6 Poly granule-associated protein compare
PP_4402 -1.7 -9.6 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_2334 -1.7 -5.2 2-methylisocitrate lyase compare
PP_4693 -1.7 -4.0 RNA polymerase-binding transcription factor DksA compare
PP_5007 -1.7 -2.9 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3380 -1.7 -5.6 2-ketogluconate utilization repressor compare
PP_0597 -1.7 -12.2 methylmalonate-semialdehyde dehydrogenase compare
PP_4692 -1.7 -9.9 putative aspartate/tyrosine/aromatic aminotransferase compare
PP_3377 -1.6 -10.6 2-ketogluconate transporter, putative compare
PP_4941 -1.6 -6.0 conserved exported protein of unknown function compare
PP_0995 -1.6 -7.7 conserved membrane protein of unknown function compare
PP_0513 -1.6 -2.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1215 -1.6 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4487 -1.6 -13.3 acetyl-CoA synthetase compare
PP_3105 -1.5 -3.5 conserved membrane protein of unknown function compare
PP_0232 -1.5 -1.8 ATP-binding taurine transporter subunit compare
PP_4896 -1.5 -7.9 DNA mismatch repair protein MutL compare
PP_0888 -1.5 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_4985 -1.5 -8.6 16S rRNA m3U1498 methyltransferase compare
PP_5216 -1.5 -2.4 exopolyphosphatase compare
PP_1113 -1.5 -8.8 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0547 -1.5 -4.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4947 -1.5 -11.6 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_5183 -1.5 -4.8 glutamylpolyamine synthetase compare
PP_2348 -1.5 -6.0 Sensor histidine kinase compare
PP_4265 -1.5 -3.6 DNA-binding transcriptional dual regulator compare
PP_0247 -1.5 -8.0 Osmolarity sensor protein EnvZ compare
PP_0959 -1.5 -2.7 phospholipid ABC transporter compare
PP_4591 -1.5 -4.5 Ribonuclease D compare
PP_4400 -1.4 -8.0 Bkd operon transcriptional regulator compare
PP_5347 -1.4 -8.8 pyruvate carboxylase subunit A compare
PP_5114 -1.4 -1.9 putative adenine methyltransferase compare
PP_0978 -1.4 -1.7 conserved protein of unknown function compare
PP_5295 -1.4 -2.3 conserved protein of unknown function compare
PP_4008 -1.4 -6.8 ATP-dependent serine protease compare
PP_1109 -1.4 -9.2 Transcriptional regulator, GntR family compare
PP_2326 -1.4 -8.2 Universal stress protein compare
PP_2322 -1.3 -6.4 Major outer membrane lipoprotein compare
PP_4984 -1.3 -8.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4273 -1.3 -1.9 Transcriptional regulator, MerR family compare
PP_2027 -1.3 -4.5 conserved exported protein of unknown function compare
PP_0593 -1.3 -1.3 putative ribosome-binding factor compare
PP_1071 -1.3 -4.2 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_3504 -1.3 -6.1 conserved protein of unknown function compare
PP_1036 -1.2 -4.2 membrane-bound lytic murein transglycosylase F compare
PP_2217 -1.2 -4.0 enoyl-CoA hydratase compare
PP_1112 -1.2 -7.9 conserved membrane protein of unknown function compare
PP_t49 -1.2 -3.7 tRNA-Met compare
PP_5230 -1.2 -2.9 Tyrosine recombinase XerC compare
PP_5346 -1.2 -5.3 pyruvate carboxylase subunit B compare
PP_0058 -1.2 -8.6 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_0914 -1.2 -6.6 GGDEF domain protein compare
PP_2030 -1.2 -3.2 conserved protein of unknown function compare
PP_1364 -1.2 -6.5 conserved exported protein of unknown function compare
PP_4943 -1.2 -1.7 putative Glycosyl transferase compare
PP_4505 -1.2 -4.6 Sensor histidine kinase compare
PP_1842 -1.2 -5.1 Glutamine amidotransferase, class I compare
PP_5066 -1.2 -4.3 K(+)/H(+) antiporter NhaP2 compare
PP_1309 -1.1 -4.8 conserved exported protein of unknown function compare
PP_0363 -1.1 -7.6 8-amino-7-oxononanoate synthase compare
PP_4653 -1.1 -3.7 adenine:H+ symporter compare
PP_5110 -1.1 -2.6 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3286 -1.1 -4.9 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0405 -1.1 -9.3 conserved protein of unknown function compare
PP_0366 -1.1 -5.9 dethiobiotin synthetase compare
PP_4893 -1.1 -6.0 GTPase HflX compare
PP_2402 -1.1 -2.4 putative Sensor histidine kinase compare


Specific Phenotypes

For 63 genes in this experiment

For nitrogen source DL-2-Aminobutyric acid in Pseudomonas putida KT2440

For nitrogen source DL-2-Aminobutyric acid across organisms