Experiment set27IT028 for Pseudomonas putida KT2440

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DL-2-Aminobutyric acid nitrogen source

Genes with specific phenotypes:

  gene name fitness t score description  
PP_3654 -3.8 -5.5 leucine-responsive regulatory protein compare
PP_4779 -3.8 -18.4 AMP nucleosidase compare
PP_0137 -3.1 -11.3 glutamate/aspartate-proton DAACS transporter compare
PP_0680 -3.0 -17.5 ATP-dependent protease-like protein compare
PP_5270 -3.0 -8.4 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_1067 -2.9 -12.5 Sensor histidine kinase compare
PP_2245 -2.8 -9.8 Transcriptional regulator, Cro/CI family compare
PP_0575 -2.5 -6.3 conserved membrane protein of unknown function compare
PP_4654 -2.2 -12.5 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_5233 -2.1 -8.9 ammonium transporter AmtB compare
PP_5271 -2.0 -6.3 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_4403 -1.9 -10.5 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_2211 -1.9 -7.0 Transcriptional regulator, AraC family compare
PP_4632 -1.8 -8.2 dihydrofolate reductase / dihydromonapterin reductase compare
PP_2216 -1.8 -9.8 short-chain acyl-CoA dehydrogenase compare
PP_1071 -1.8 -6.6 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_4401 -1.8 -9.2 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_4692 -1.7 -11.4 putative aspartate/tyrosine/aromatic aminotransferase compare
PP_0597 -1.6 -10.7 methylmalonate-semialdehyde dehydrogenase compare
PP_4487 -1.6 -13.0 acetyl-CoA synthetase compare
PP_4896 -1.4 -7.6 DNA mismatch repair protein MutL compare
PP_4947 -1.4 -11.2 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_4402 -1.4 -9.7 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_3377 -1.4 -9.7 2-ketogluconate transporter, putative compare
PP_4400 -1.3 -5.4 Bkd operon transcriptional regulator compare
PP_1842 -1.2 -5.2 Glutamine amidotransferase, class I compare
PP_4893 -1.2 -6.5 GTPase HflX compare
PP_0247 -1.1 -6.2 Osmolarity sensor protein EnvZ compare
PP_4197 -1.0 -6.6 Transcriptional regulator, GntR family compare
PP_0128 +1.0 6.9 conserved protein of unknown function compare
PP_4641 +1.0 7.2 putative transporter compare
PP_0266 +1.1 7.0 Agmatine deiminase compare
PP_0412 +1.1 5.0 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_1827 +1.1 6.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_0864 +1.2 9.4 ornithine decarboxylase compare
PP_0020 +1.3 10.1 hypothetical protein compare
PP_4059 +1.3 9.0 fused trehalose synthase B/maltokinase compare
PP_5072 +1.3 10.9 efflux transporter compare
PP_1236 +1.4 6.4 putative Glycine cleavage system transcriptional repressor compare
PP_3761 +1.5 12.3 Sensor histidine kinase/response regulator compare
PP_1291 +1.5 11.1 PhoH family protein compare
PP_4483 +1.6 5.8 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_0850 +1.6 8.1 Dual-specificity RNA methyltransferase RlmN compare
PP_4959 +1.6 11.8 diguanylate cyclase compare
PP_2181 +1.7 10.0 Transcriptional regulator, Cro/CI family compare
PP_0380 +1.7 9.1 Coenzyme PQQ synthesis protein A compare
PP_1758 +1.9 10.9 putative sulfurtransferase containing rhodanese-like domain compare
PP_0118 +2.0 8.5 zinc import ATP-binding protein compare
PP_3415 +2.3 8.7 Transcriptional regulator, LacI family compare
PP_4485 +2.4 16.3 histidine / lysine / arginine / ornithine ABC transporter - permease subunit compare
PP_4484 +2.6 19.5 histidine / lysine / arginine / ornithine ABC transporter - permease subunit compare
PP_4486 +2.6 17.1 lysine / arginine / ornithine ABC transporter - periplasmic binding protein compare
PP_1444 +3.0 25.9 quinoprotein glucose dehydrogenase compare
PP_0409 +3.1 5.8 Sensory box histidine kinase compare
PP_4184 +3.5 28.7 branched chain amino acid transporter compare
PP_2389 +4.0 23.8 conserved protein of unknown function compare


Specific phenotypes for nitrogen source DL-2-Aminobutyric acid across organisms